Ccar000971.1
Basic Information
- Insect
- Chrysoperla carnea
- Gene Symbol
- -
- Assembly
- GCA_905475395.1
- Location
- FR997759.1:15919561-15922038[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 4.1e-05 0.00089 20.0 1.6 1 23 86 108 86 108 0.98 2 22 0.0053 0.11 13.3 2.0 1 23 112 134 112 134 0.97 3 22 0.00017 0.0036 18.1 5.9 1 23 140 162 140 162 0.98 4 22 2.2e-05 0.00048 20.8 1.8 1 23 168 190 168 190 0.98 5 22 8.5e-06 0.00018 22.1 1.7 1 23 220 242 220 242 0.98 6 22 5.9e-05 0.0013 19.5 4.7 1 23 248 270 248 270 0.98 7 22 5.4 1.2e+02 3.9 1.8 9 23 283 297 281 297 0.93 8 22 4.4e-05 0.00094 19.9 1.7 1 23 319 341 319 341 0.97 9 22 2.8e-06 6e-05 23.6 1.6 1 23 347 369 347 369 0.98 10 22 1.2e-05 0.00027 21.6 1.3 2 23 376 397 375 397 0.97 11 22 0.026 0.56 11.2 0.6 1 23 405 427 405 427 0.92 12 22 3.4e-05 0.00073 20.2 2.7 1 23 442 464 442 464 0.98 13 22 0.00012 0.0025 18.5 2.5 1 23 470 492 470 492 0.98 14 22 2.8e-05 0.0006 20.5 0.5 1 23 498 520 498 520 0.98 15 22 7.6e-06 0.00017 22.3 1.4 1 23 526 548 526 548 0.97 16 22 4.1e-06 8.9e-05 23.1 1.1 1 23 575 597 575 597 0.98 17 22 0.00011 0.0024 18.6 3.6 1 23 603 625 603 625 0.98 18 22 9e-06 0.00019 22.0 3.0 1 23 631 653 631 653 0.98 19 22 0.002 0.044 14.6 1.3 1 23 662 684 662 684 0.99 20 22 0.00088 0.019 15.8 2.2 1 23 723 745 723 745 0.98 21 22 1e-05 0.00022 21.9 0.7 1 23 751 773 751 773 0.98 22 22 0.0002 0.0043 17.8 1.5 1 23 779 801 779 801 0.97
Sequence Information
- Coding Sequence
- ATGTCTACAGATTTGTTTAATGACTTTCAAAATTCGCTATTAATTCCGGAAGAACATATAAAAATTGAAGAATTACTTCCTGAATTATTAATCAATAAAAAAGTATTAGATGACACAGTTTTAACGCAACATGATCCTCTCGAAATCGAAAATGGAAACATTGAACAACTTTTACAAACAGAATTGATAATTAAAACTGAAGATATTGAGGAGACATTCGAAGAAAATTCTACTAGTGAAATCGAGCAAAACTCATTTTCGTGTAATCTCTGTGGTAAAACATATTTCAAGCGTAGCAGTTTACAAACGCATATCGGAACTCATACAAAATCATTTTCATGTGAAATTTGTCATAAAAAATTTGGACGATTATACGTTTTAGACAGACATAAACTCATTCATACCGGGGTTAAACCATTTTCATGTGACATTTGTGACAAGAAATTTATACAGAAAAATCACTTCTTTAAACATAAACAAACTCATATTAGTGACAAAGTTTTTACGTGTGAAATTTGTAATAAAAAATTTACTCAAGCCAATACTTTATCGAAACATAAACAAATTCACAAAAAAGAAATAGAAAAATGGATTTTAAGTGATATTTTTCAAGGCGAAATATCTGATATTTCTCAGATTCATACTGGAGGAAGACGTTTTTCCTGTGATGTATGTGGTAAAAAATTTACGAGAAAATTCGTTTTACTTAGGCATCAATTAACTCATACCGGTGAAAAACCATTTTCGTGCGATATTTGTGATAAGAAATTTATACAGAAAAATCATTTTATTAAACATAAACAAACTCATACTAGTGAAAAACTTTTTTCGTATGAAAGTGATAACAAATTTACGCAACATAGTACTTTATCGAAACATAAACAGATACATACAGAAGAAAAAGAAAAATGGTTTTCAAGTGATATTTCTCAGATTCATACGGGAGGAAGACGATTTTCCTGTGATATGTGTGGTAAAAAGTTTACAAGAAAATTCGTTTTACTTAGACATCAACTATTACATACCGGTGAAAAACCATTTTCCTGTGATATTTGTGATAAGAAATTTATACAGAAAAATCAATTAATTAAACATACACAAACGCATACTAGTGACAAAGTTTTGTCGTGTGAAATTTGTGATAAAAAATTTAACAGACTAAATAATTTACTTAAACATAAACGAATTCATGCAAAAAAATCTGGAAAATTGTATGCATGTATTGTTTGTGATCAAAAATTTGAAAATCGTTACGATTATCTTAACCATAAACGAATTCATACAGGCGAAACAAGTTCTTCAACTAATAATGGAGAGAAAAATTTTTCATGTAATATTTGTGGTAAAAAATTTTCACGTAAATTCGTATTTTTTCGACATCAATTAGTTCATATACGAGAAAAACGATTTTCATGCGATGTTTGTGATAAAAAATTCAATTTTAAATATAAATTAATCATACATAAACGCTCTCATACTGGAGAAAAACCTTATTCGTGTGATATTTGTGATAAAAAATTTTCTGTAAACAGTAGTATGATTGAACACAAACGAATCCATACACGAGAAAAACCATTTTCTTGTAAAATTTGTGGTAAAACATTTGCTCAAAATGGTACCTTACTTAATCATAAACGTTTTCATTATTCAAAGGAAAATGTTTTCGAAAAAAAATCAATAAAAAATAACTTAAATAAACGAAATCATAATGAGGAAAGACTTTTTTCATGTGATATTTGTGGTAAAAATTTTACAAGAAAATTCGTCTTACAAAGGCATCAATTAATACATACCGGTGAAAAACCATTTTCGTGTGATATTTGTGATAAAAAATTTATTCAGAAAAATCATTTTATTGAACATAAACAAACTCATATTGGTGAAAAACGGTTTTCATGTGAAATTTGTGATAAAAAATTTACTCACCAAAAGAATTTAATGATACATAAGCAAATTCATCTTGAGGAAAAATCTGGAAAATTGTATTCATGTGACGTTTGTGATGAAAAATTTGAATTTCGGTTTGTATTTCTTAGTCATATGCGAACTCATAGTGACGAAAAAACTTGTGTTACACAGATGAAGAATGGAGAAAAAAATGGTAAAAAATTTTCCCACAAATTTATTTTTCGTCGACATCAATTAAATCATAACAACGAAAAACGTTTTTCATGTGATATCTGTGCTAAAAAATTTAATTTTAAATATAAATTAATCATACATAAACGCTCTCATAGTGGAAAAAAACCATTTTCGTGTGATATTTGTGATAAAAAATTTACCGTGAAAACTAGTTTGATCGAACATACACGTGTTCATACAGGAGAAAAACCATTTTCTTGTGAAATTTGTTATAAAACTTTTGCTCAAAATGGTACTTTACTAAATCATAAACGATTTCATTGTTCAAGAAAAAAACGAATTAGTAATAAAGAAAGACGTTTTTCATGTGATTTTTGTGATAAAAAATTTTCATGA
- Protein Sequence
- MSTDLFNDFQNSLLIPEEHIKIEELLPELLINKKVLDDTVLTQHDPLEIENGNIEQLLQTELIIKTEDIEETFEENSTSEIEQNSFSCNLCGKTYFKRSSLQTHIGTHTKSFSCEICHKKFGRLYVLDRHKLIHTGVKPFSCDICDKKFIQKNHFFKHKQTHISDKVFTCEICNKKFTQANTLSKHKQIHKKEIEKWILSDIFQGEISDISQIHTGGRRFSCDVCGKKFTRKFVLLRHQLTHTGEKPFSCDICDKKFIQKNHFIKHKQTHTSEKLFSYESDNKFTQHSTLSKHKQIHTEEKEKWFSSDISQIHTGGRRFSCDMCGKKFTRKFVLLRHQLLHTGEKPFSCDICDKKFIQKNQLIKHTQTHTSDKVLSCEICDKKFNRLNNLLKHKRIHAKKSGKLYACIVCDQKFENRYDYLNHKRIHTGETSSSTNNGEKNFSCNICGKKFSRKFVFFRHQLVHIREKRFSCDVCDKKFNFKYKLIIHKRSHTGEKPYSCDICDKKFSVNSSMIEHKRIHTREKPFSCKICGKTFAQNGTLLNHKRFHYSKENVFEKKSIKNNLNKRNHNEERLFSCDICGKNFTRKFVLQRHQLIHTGEKPFSCDICDKKFIQKNHFIEHKQTHIGEKRFSCEICDKKFTHQKNLMIHKQIHLEEKSGKLYSCDVCDEKFEFRFVFLSHMRTHSDEKTCVTQMKNGEKNGKKFSHKFIFRRHQLNHNNEKRFSCDICAKKFNFKYKLIIHKRSHSGKKPFSCDICDKKFTVKTSLIEHTRVHTGEKPFSCEICYKTFAQNGTLLNHKRFHCSRKKRISNKERRFSCDFCDKKFS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -