Ccar010127.1
Basic Information
- Insect
- Chrysoperla carnea
- Gene Symbol
- -
- Assembly
- GCA_905475395.1
- Location
- FR997755.1:5806301-5809674[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 1.7e-05 0.00037 21.2 4.1 1 23 86 108 86 108 0.98 2 23 0.0068 0.15 13.0 1.0 1 23 114 136 114 136 0.97 3 23 2.5e-06 5.5e-05 23.8 2.7 1 23 142 164 142 164 0.98 4 23 0.012 0.25 12.3 3.5 1 23 170 192 170 192 0.98 5 23 0.00013 0.0027 18.4 1.8 1 23 198 220 198 220 0.98 6 23 0.0099 0.21 12.5 6.3 1 23 226 248 226 248 0.98 7 23 0.001 0.022 15.6 0.4 1 23 254 276 254 276 0.97 8 23 9.3e-05 0.002 18.8 3.6 3 23 284 304 282 305 0.95 9 23 4.9e-05 0.0011 19.7 3.0 1 23 489 511 489 511 0.97 10 23 0.00016 0.0035 18.1 6.6 1 23 517 539 517 539 0.98 11 23 6.5e-05 0.0014 19.3 3.1 1 23 545 567 545 567 0.98 12 23 0.02 0.43 11.5 0.2 1 23 573 595 573 595 0.96 13 23 0.022 0.46 11.4 0.2 5 23 605 623 604 623 0.95 14 23 1.3e-05 0.00028 21.5 2.6 1 23 629 651 629 652 0.95 15 23 0.00013 0.0028 18.4 0.2 1 23 843 865 843 865 0.98 16 23 2.7e-05 0.00058 20.5 3.1 1 23 871 893 871 893 0.98 17 23 6.3e-05 0.0014 19.4 3.3 1 23 899 921 899 921 0.98 18 23 0.0014 0.031 15.1 2.8 1 23 927 949 927 949 0.94 19 23 0.01 0.22 12.4 1.7 1 23 955 977 955 977 0.95 20 23 0.00023 0.005 17.6 2.8 3 23 985 1006 983 1006 0.95 21 23 1.1e-05 0.00024 21.7 0.9 1 23 1012 1034 1012 1034 0.98 22 23 5e-06 0.00011 22.8 1.0 1 23 1040 1062 1040 1062 0.98 23 23 5e-05 0.0011 19.7 0.4 1 23 1068 1090 1068 1090 0.98
Sequence Information
- Coding Sequence
- ATGGAATATCAAGAATTAAAAGTTAAAGAAGAAATATTAGAAGAAAATACTTCAATGGAAGAAAATCAACAAAATGAAACCAAAAAGTTCGAACAAATATTTCATGCAGAATTTATTAAAGAAGAAATATTTGACGACAGTTCTCCCACGGAACATCAACATTGCAAGTTATTTAATGACGATAATATTAAAAATGAACAAGAGTTCCTTGGAAGAGGAGTAGTTAAAAATGAAGATATCGGAGCTGGGAAACTTTTTGTATGCGATATCTGCAATAAAAAATTTACCCACAAACAAAGTCTACTTCGGCACAAACGTATTCATACCGGATACGAACCATTTTCATGTGATATTTGTGAAAAAACATTTACTGTTTACGCATATTTCGTTCTACATAAAAAATTACATTCGGGAGAAAAACAATTTTCATGTGATATTTGTGGGAAAAAATATAGTCAAAATTCACATTTAACTGATCATAAACGAGTTCATATCGGTGAGAAAAAATTTTCCTGTGATGTTTGTGAACAAAAATTCATACATAAACGAAGTATGCTTCGACATAAACTAACTCATACACAAGAAAAACCATTTTCGTGTGATTTGTGTGATAAAACATTTAGTTTGAATCAATATTTAGTTCAACATAAACGAACTCATACCGGGGAAAAACCATTTTCATGTGATATTTGTTATCAAACATTTACGACGAAACGATGTATGATCAAACATAAACGTAGACATAAAGAAGGTAAACCATTTTCTTGTGATGTTTGTGATAAAAAATTCCGTGAAATTGAATATTTAATGCAACATAGAATCATTCATACAAAGGGAAAACTTTTTGGTTGTGATGAGTGTGAGAAAAAATTTAGTCGACAAAATACTTTAGTTCGACATAAACGAACTCATCACACGCGAGAAAAATCGTATATTTCTCATGGAAAATTCCAAAAAACCGAGAATTTATTGAAACAAGTCATTTATGATGAAAAAAATATCAATGGTGGACACATTGAAGAGGGAAATATTAATGGTGAACCAATTGAAGAGGGAAATATCAATGGTGAACCAATTGAAGAGGGAAATATCAATGGTGAACCAATTGAAGAGGGAAATATCAATGGTGAACCAATTGAAGAGGGAAATATCAATGGTGAACCAATTGAAGAGGGAAATATCAATGGTGAACCAATTGAAGAGGGAAATTGTGATATTTCTGATGGAAAACTACAAGAAAATCAAAATTTAATTGAACATCTGAATATGAATCTCAAAATTGAACAATTAGTTGATGAAAATCGAATTTATACAGAAGACAAATTTTCTTCTGATAGAAAATTACAAGAAAATCAATATTTATTTGATCGAAAACATATCGAAGATGAACAGAAAGAATTTCAAGAGAAAAACAATTCAATTGAATCTAAATTAACAAATGAAAGCTTTATCGGAGAAAAAGCATTCATTTGTGATTTTTGTGATAAAAGATTTTCTCAACGGCAACACTTAATTGTACATAAACGAATTCATACCGGAGAAAAACCATACTCTTGTAATTTTTGTAATAAAAAATTTAAACAAAGTCAACATTTAAATACCCATAAACGTATTCATACCGGAGAAAAACCATTTTCTTGTGATTTTTGTAATAAAAGATTTACACAACGACGAAATTTACTGGAACATAAACGAGTTCACACAGGAGAAAAACTTTTTCCTTGTGATATTTGTGGTACAAAGTTTGGAATTAAACAAAGTATGATACGACATAAAGGTACCCATAACGAAGAAAAACCCTATTCTGGTGATGTTTGTGGGAAAACATTTCGAGAAAATAAATTCTTAATTAAACATAAAATAATTCATACAGAGGGGAAAAGTTTTGCTTGTGATGAATGCGATAAAACATTTAGTCGACAAAATGTTTTAGTTCGACATAAACGAACTCATCACACGGGAGAAAAATCGTATATTTCTCATGGAAAATTCCAAAAAACCGAGAATTTATTGAAACAAGTAATTTATGATGAAAAAAATATTAATGGTGAACCAATTGAAGAGGGAAATTGTGATATTTCTGATGGGAAACTACAAGAAAATCAAAATTTATTTGAACATCTGAATATGAACATCAAAATTGAACAATTAGGTGATGAAAATCGAATTTATACGGAAGAAAAATTTTCTTCTTCTGATGGAAATCAATATTTGATTGAAAATTTAACTTTTGATGGGGGAAAAATTAAAAGTGAAAATTTAAATGAAGATTATCTTGTCCATACAGAAGAAAAATCATTATCTTGTAATATATCGGATGGAAAATTTGAAGAAAATCATTATAAATTTGAAAATAAACTAATTTGCGATCAAAAAATTATTAAAAGTGAAAATTTAGATGATAATTATGAAGAAGAACAATTAATTGGTGAACAAATTTACACAGAAGAAAAACATTTTCTTTGTAATATTTCTGATAGAAATTTTCAAGAAACTCGACAATTAGTTGATGAAAATCAACAAGTATTTCCTTGTAATATTTGTGGTAAAATATTATCGCAACGACAGTACTTAATTGTTCATAAACGAATTCATACAGGCGAAAAACCATATGCCTGTGATTTATGTGATAAGAAATTTAACCAAAGTCAACATTTAAATATTCATAAACGAACACATACCGGGGAAAAACCATTTTCCTGTGATATTTGTCATAAAAGATTTACACAACTTCAAAATTTAAGTGAGCATAAACGAGTTCACTCAAAGGAAAAACTATTTATCTGTGATATTTGTAACAAGAAGTTTACACATAAACAAAGTATGCTTCGACATAAAGGGATTCATAATGAATTAAAACCATTTTCTTGTGACTTTTGTGATAAAAAATTTCGAGAATATGAATTTTTAATAAAACATAAAGTAATTCATACAGAAGGAAAAATTTTTGGATGTGATGAATGTGATAAAACATTTTGTCGACAAAATACTTTGGTACGACATAAGCGAGCTTATCACAGAGGGGAAAAACCATTTTCATGTGATGTTTGTGAGAAATCATTTTCCGCACGTCAGTATTTAATTCAACATATGAGAACTCATACAGGAGAAAAACCATTTCCGTGTGATATTTGTGATAAAAGTTTTCGTCAAGTTTCTCATTTAGTCGAACATAAACGAATTCATACAGAAGAGAAGTATTTTTCATGTGATGTTTGTGGAGAACAATTTGCCAGAAGAAATCAATTAATTTCACATAAACGAATTCATATTGAGAAGAGAAATCATGTTTTAGCAAACAATAATTGA
- Protein Sequence
- MEYQELKVKEEILEENTSMEENQQNETKKFEQIFHAEFIKEEIFDDSSPTEHQHCKLFNDDNIKNEQEFLGRGVVKNEDIGAGKLFVCDICNKKFTHKQSLLRHKRIHTGYEPFSCDICEKTFTVYAYFVLHKKLHSGEKQFSCDICGKKYSQNSHLTDHKRVHIGEKKFSCDVCEQKFIHKRSMLRHKLTHTQEKPFSCDLCDKTFSLNQYLVQHKRTHTGEKPFSCDICYQTFTTKRCMIKHKRRHKEGKPFSCDVCDKKFREIEYLMQHRIIHTKGKLFGCDECEKKFSRQNTLVRHKRTHHTREKSYISHGKFQKTENLLKQVIYDEKNINGGHIEEGNINGEPIEEGNINGEPIEEGNINGEPIEEGNINGEPIEEGNINGEPIEEGNINGEPIEEGNCDISDGKLQENQNLIEHLNMNLKIEQLVDENRIYTEDKFSSDRKLQENQYLFDRKHIEDEQKEFQEKNNSIESKLTNESFIGEKAFICDFCDKRFSQRQHLIVHKRIHTGEKPYSCNFCNKKFKQSQHLNTHKRIHTGEKPFSCDFCNKRFTQRRNLLEHKRVHTGEKLFPCDICGTKFGIKQSMIRHKGTHNEEKPYSGDVCGKTFRENKFLIKHKIIHTEGKSFACDECDKTFSRQNVLVRHKRTHHTGEKSYISHGKFQKTENLLKQVIYDEKNINGEPIEEGNCDISDGKLQENQNLFEHLNMNIKIEQLGDENRIYTEEKFSSSDGNQYLIENLTFDGGKIKSENLNEDYLVHTEEKSLSCNISDGKFEENHYKFENKLICDQKIIKSENLDDNYEEEQLIGEQIYTEEKHFLCNISDRNFQETRQLVDENQQVFPCNICGKILSQRQYLIVHKRIHTGEKPYACDLCDKKFNQSQHLNIHKRTHTGEKPFSCDICHKRFTQLQNLSEHKRVHSKEKLFICDICNKKFTHKQSMLRHKGIHNELKPFSCDFCDKKFREYEFLIKHKVIHTEGKIFGCDECDKTFCRQNTLVRHKRAYHRGEKPFSCDVCEKSFSARQYLIQHMRTHTGEKPFPCDICDKSFRQVSHLVEHKRIHTEEKYFSCDVCGEQFARRNQLISHKRIHIEKRNHVLANNN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -