Basic Information

Insect: Chrysoperla carnea
Gene Symbol: -
Assembly: GCA_905475395.1
Location: FR997758.1:19319573-19323778[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 23 0.00073 0.016 16.0 0.1 1 23 64 86 64 86 0.95

2 23 1.4e-05 0.0003 21.4 1.5 1 23 107 129 107 129 0.97

3 23 0.0025 0.055 14.3 2.7 1 20 135 154 135 157 0.94

4 23 2.6e-07 5.5e-06 26.9 0.4 1 23 163 186 163 186 0.92

5 23 0.0013 0.029 15.2 0.3 2 23 193 214 192 214 0.97

6 23 5.5e-06 0.00012 22.7 1.4 1 23 223 245 223 245 0.99

7 23 0.0003 0.0066 17.2 1.1 1 23 251 273 251 273 0.99

8 23 5.5e-05 0.0012 19.6 0.2 1 23 279 301 279 301 0.99

9 23 0.00012 0.0026 18.5 2.7 1 23 307 329 307 329 0.98

10 23 0.00019 0.0041 17.9 4.0 1 23 335 357 335 357 0.98

11 23 0.029 0.62 11.0 3.9 1 20 363 382 363 385 0.94

12 23 2.7e-05 0.00058 20.6 1.0 1 23 391 414 391 414 0.97

13 23 0.00012 0.0027 18.5 0.3 1 23 471 493 471 493 0.97

14 23 0.0061 0.13 13.1 0.3 1 23 554 576 554 576 0.94

15 23 0.0069 0.15 13.0 0.2 1 23 658 680 658 680 0.96

16 23 0.00027 0.0058 17.4 5.3 2 23 687 708 686 708 0.97

17 23 0.00095 0.02 15.7 0.3 1 23 714 736 714 736 0.99

18 23 8.2e-07 1.8e-05 25.3 1.3 1 23 742 764 742 764 0.99

19 23 4.8e-05 0.001 19.7 0.4 1 23 770 792 770 792 0.98

20 23 9.9e-05 0.0021 18.8 2.8 1 23 799 821 799 821 0.97

21 23 0.005 0.11 13.4 1.9 1 19 827 845 827 846 0.96

22 23 5.1 1.1e+02 3.9 0.9 7 23 851 867 851 867 0.90

23 23 0.013 0.29 12.1 0.1 2 23 874 895 873 895 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	23	0.00073	0.016	16.0	0.1	1	23	64	86	64	86	0.95
2	23	1.4e-05	0.0003	21.4	1.5	1	23	107	129	107	129	0.97
3	23	0.0025	0.055	14.3	2.7	1	20	135	154	135	157	0.94
4	23	2.6e-07	5.5e-06	26.9	0.4	1	23	163	186	163	186	0.92
5	23	0.0013	0.029	15.2	0.3	2	23	193	214	192	214	0.97
6	23	5.5e-06	0.00012	22.7	1.4	1	23	223	245	223	245	0.99
7	23	0.0003	0.0066	17.2	1.1	1	23	251	273	251	273	0.99
8	23	5.5e-05	0.0012	19.6	0.2	1	23	279	301	279	301	0.99
9	23	0.00012	0.0026	18.5	2.7	1	23	307	329	307	329	0.98
10	23	0.00019	0.0041	17.9	4.0	1	23	335	357	335	357	0.98
11	23	0.029	0.62	11.0	3.9	1	20	363	382	363	385	0.94
12	23	2.7e-05	0.00058	20.6	1.0	1	23	391	414	391	414	0.97
13	23	0.00012	0.0027	18.5	0.3	1	23	471	493	471	493	0.97
14	23	0.0061	0.13	13.1	0.3	1	23	554	576	554	576	0.94
15	23	0.0069	0.15	13.0	0.2	1	23	658	680	658	680	0.96
16	23	0.00027	0.0058	17.4	5.3	2	23	687	708	686	708	0.97
17	23	0.00095	0.02	15.7	0.3	1	23	714	736	714	736	0.99
18	23	8.2e-07	1.8e-05	25.3	1.3	1	23	742	764	742	764	0.99
19	23	4.8e-05	0.001	19.7	0.4	1	23	770	792	770	792	0.98
20	23	9.9e-05	0.0021	18.8	2.8	1	23	799	821	799	821	0.97
21	23	0.005	0.11	13.4	1.9	1	19	827	845	827	846	0.96
22	23	5.1	1.1e+02	3.9	0.9	7	23	851	867	851	867	0.90
23	23	0.013	0.29	12.1	0.1	2	23	874	895	873	895	0.96

Sequence Information

Coding Sequence: ATGTCAAATGAAATATTTCACCAATTAATTCGAACGGAAAACATAAAAACCGAACAATTACCATCATTCGATTATGAAACAAATCAAGTAAATAATTCATTAATTCGAAAAGAAAATATAAAAATCGAACAAGAATTACTCGCTGAATTCATAACCAAAGATGAAAATATTCACGAAACCGAAGAAACTTTTATTTGTAATATTTGTGGAGAGGTATTTATGGAACAAACTCTTTTAAATAACCATCAAGTTAACCATGAAAAAGAAAAATCATCGAATTTATGTAATGATAATCACCAAATTTATATTGAAAAACCATTTATATGTTATCTTTGTGGTAAAAAATTTAAAGTTCAAAGTCAGTTAATCTACCATCAACGTTCTCATACCGGAGAAAAACCGTATCCATGTGATATGTGTGAAAAAAAGTTTTCTGTGAAAAGTAGTTTAGTTAAACATAAATTGTGTCATACTGGTGAAAAACCATTTGAATGTGATATTTGTGGTAAAAAATTTACAAATAAATCTAATTTAGTTCGGCATCAAGGGTTAATCCATAAAGAGGAAACATATTTAGTTTGTGATTTTTGTGATGTAAAATTTACAACAGATGAAAATTTAGTTCAACATAAACGTGTTCATATCGAAATCGATAAAGAAAAACATTATACTTGTGATGTGTGTAATAAAAAATTTAACGCACAAAGTGATTTAACTAGACATAAACGAATTCATACCGGTGAAAAACCTTATACATGTGAGTTTTGTGATAAAAAATTTAATGGCAGTAATGATTTACTTTTACATAAACGTGTTCATACCGGTGAAAAACCATATACATGTGATATTTGTGATGGAAAATTTGCACAACGTGCATCTTTAATTCGACATAAACGTATACATACTGGAGAAAAACCATTTTCATGTGAGTTTTGTGATAAGAAATTTGCACAACAAGCATGTTTAACCGTACACAAACGAATTCATACCGGTGAAAAACCATATCAATGTGATTTTTGTGATAAAAAATTTACAAGTCGTGGTTGTTTAGTTAAACATAATCGTATTCATACGGGTGAAAAACCATTTTCATGTAATGTTTGTGATAAAAAATTTGCTATACATTCAAGTTTAGTTCGACATAAATTATGTCATGTTGGTAAAAAACTTTTCGAATGTGATGTTTGTGATAATAAATTTACGAGTCAAAGTAGTTTATTTCGACATACAAAAATAGTTCATCGAAAAGGAAAAGTGTTGGAAAATAACGGAGAAAAATCACAATCAATAAATTTTGAAACAATTGATGTTAATAATCCATTAAATATTAAAGTTGAGGGGGGCCAAGTTGAGCAAGAATTTAACACCGAAATTAAATGTGAAGTGAATATTGTTGAAGCTCAAGAGCTTTTTAATTGTGACTTTTGTGGTAAGATATTTAACGAACAAATTGAATTAAATAAACATCAAATTATTCATAAAAAAGAAAAATCTCAAAGTAAAAGAACTCATACAGGAGAAAAACCACTAGAAAGTGGTGGTATTTGTAATAATTTTGAGACAATTCATGTAAATCCATTGATCCAAAAAGAAGATATTAAAATTGAAAAAGAATTACACACCGATTTAAAAGATGAAGTTGACGAAACTGAAGAGTTTTATAATTGTGATGTTTGTGGTGAGATATTTATTGAAGAAATTCATTTAAAAAATCATCAAGTTTTTCATAAAAAAGAAAAATTTGATTTGTGTGATGATAATCATAAAAAATTGATCGATGGAAGTGAAGCAGTTAAGCATAAACGAGTCAATAATGGAGAAAAAAATGTTGTTCCTGATAAAAAAATGGTCACATATCAAAAATTAGTTGGAGATTTTGAAACAATTCATCATGTAAATAATCCAGAAGAAATTAAAATCAAAAAAGAATTACACACCGATTTAAAAACTGAAGATGTTGATGAAGAAATTTTTAATTGTGATTTTTGTGGAGAAATATTTATCAAGGAAATTCAATTAAATAATCATAAAATTATTCACAAGAATGAAAAATCTAAATCATGTGATATTTGTCATAAAAAATTTACACGACATTCAAGTTTAGTTGTACATAAACGAATTCATACCGGAGAAAAACCTTATAAATGTGACGTTTGTGATAAAAGATTTAATGGCGGTAATGATTTACTTTTACATAAACGAGTTCATACCGGAGAAAAACCTTATACTTGTGATATTTGCGATGAAAAATTTAAACAACGTACAGCTTTACTTCGACATCAACGTACACATACTGGAGAAAAACCATTTCCATGTGATAGTTGTGATAAAAAGTTTACAGAACGGGAAAATTTAATTGTACACAAACGAATTCATACGGGAGAGGAAAAACCATTTCAGTGTGATGTTTGTGATAAAAAATTTAATCGTAAAAGATATTTAAATTTACATAAACTAAATCATACTCGAGAAAAACCATTTGTGTGTAAAGTTTGTAATAAAAGATTTTCATTACGTAAATATTTACGTAGTCATAAACCATGCTATGCCGATAAGAAACTTAATCGAAAATCTAGTTTAATGCGACATAAACTACTTCATACAGAAGAAAAACTTTTAGTGTGTGATGTTTGTGATGAAAAATTTATCACAGATTTAGATTTGGTTAATCATAAACGAATTCATATTGGAGTCGAGTCGAGTGAAGATTCTAGCAAGTTCTAA
Protein Sequence: MSNEIFHQLIRTENIKTEQLPSFDYETNQVNNSLIRKENIKIEQELLAEFITKDENIHETEETFICNICGEVFMEQTLLNNHQVNHEKEKSSNLCNDNHQIYIEKPFICYLCGKKFKVQSQLIYHQRSHTGEKPYPCDMCEKKFSVKSSLVKHKLCHTGEKPFECDICGKKFTNKSNLVRHQGLIHKEETYLVCDFCDVKFTTDENLVQHKRVHIEIDKEKHYTCDVCNKKFNAQSDLTRHKRIHTGEKPYTCEFCDKKFNGSNDLLLHKRVHTGEKPYTCDICDGKFAQRASLIRHKRIHTGEKPFSCEFCDKKFAQQACLTVHKRIHTGEKPYQCDFCDKKFTSRGCLVKHNRIHTGEKPFSCNVCDKKFAIHSSLVRHKLCHVGKKLFECDVCDNKFTSQSSLFRHTKIVHRKGKVLENNGEKSQSINFETIDVNNPLNIKVEGGQVEQEFNTEIKCEVNIVEAQELFNCDFCGKIFNEQIELNKHQIIHKKEKSQSKRTHTGEKPLESGGICNNFETIHVNPLIQKEDIKIEKELHTDLKDEVDETEEFYNCDVCGEIFIEEIHLKNHQVFHKKEKFDLCDDNHKKLIDGSEAVKHKRVNNGEKNVVPDKKMVTYQKLVGDFETIHHVNNPEEIKIKKELHTDLKTEDVDEEIFNCDFCGEIFIKEIQLNNHKIIHKNEKSKSCDICHKKFTRHSSLVVHKRIHTGEKPYKCDVCDKRFNGGNDLLLHKRVHTGEKPYTCDICDEKFKQRTALLRHQRTHTGEKPFPCDSCDKKFTERENLIVHKRIHTGEEKPFQCDVCDKKFNRKRYLNLHKLNHTREKPFVCKVCNKRFSLRKYLRSHKPCYADKKLNRKSSLMRHKLLHTEEKLLVCDVCDEKFITDLDLVNHKRIHIGVESSEDSSKF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -