Ccar004588.1
Basic Information
- Insect
- Chrysoperla carnea
- Gene Symbol
- -
- Assembly
- GCA_905475395.1
- Location
- FR997756.1:14004196-14008164[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 24 0.002 0.043 14.7 0.4 1 23 244 266 244 266 0.97 2 24 0.00034 0.0073 17.1 1.1 1 23 289 311 289 311 0.98 3 24 0.0017 0.036 14.9 1.7 1 23 323 345 323 345 0.97 4 24 7.3e-05 0.0016 19.2 1.2 1 23 351 373 351 373 0.97 5 24 9.7e-06 0.00021 21.9 0.7 1 23 379 401 379 401 0.97 6 24 0.0005 0.011 16.5 0.8 1 23 407 429 407 429 0.98 7 24 7.3e-06 0.00016 22.3 3.6 1 23 435 457 435 457 0.97 8 24 0.0035 0.075 13.9 3.6 1 21 463 483 463 485 0.94 9 24 0.057 1.2 10.1 0.7 1 23 491 513 491 513 0.96 10 24 0.00012 0.0026 18.5 0.6 1 23 519 541 519 541 0.97 11 24 7.3e-05 0.0016 19.2 0.5 1 23 547 569 547 569 0.95 12 24 0.00016 0.0034 18.1 2.0 1 23 575 597 575 597 0.98 13 24 0.0081 0.18 12.7 1.3 3 23 602 622 601 622 0.98 14 24 7.2e-06 0.00016 22.4 4.7 1 23 627 650 627 650 0.96 15 24 0.0046 0.099 13.5 2.3 1 23 655 677 655 677 0.98 16 24 3.6e-05 0.00078 20.1 1.1 1 23 683 705 683 705 0.98 17 24 2.1e-06 4.5e-05 24.0 2.7 1 23 711 733 711 733 0.98 18 24 1.6e-05 0.00035 21.3 3.0 1 23 739 761 739 761 0.98 19 24 4.6e-07 9.8e-06 26.1 0.8 1 23 767 789 767 789 0.98 20 24 0.0071 0.15 12.9 1.8 1 23 823 845 823 845 0.98 21 24 0.0016 0.034 15.0 2.4 1 23 851 873 851 873 0.97 22 24 0.00036 0.0078 17.0 3.7 1 23 879 901 879 901 0.98 23 24 0.0024 0.051 14.4 1.6 1 23 907 929 907 929 0.92 24 24 0.00049 0.011 16.6 4.1 1 23 935 958 935 958 0.97
Sequence Information
- Coding Sequence
- ATGTCAAGAGATTGTTGCGATATTAATAATCCGATTTTAATAAACAATGTGATAGTTTTAAAACAAAAAAATAATTCGATGATACTTAAAAATGAAAATATTACAATTGAACAATTGCATTCTGAATTGATAAATAAAGATGCTGCTGATGAATTATTACTTGCGTTTCAAGAAAATCATACAGAAGAAAATTTTGTTCCAAGTGATGTTTATGAGAAAACAAAAAGTAATTCGAGTGATAATGAATTGGGAATACTTGGGCAACAAACCAATATACTTGAATGTGCACGAAATTATAGTACAGACGATACGGGAGAAAAAGATATTGCGTGTGATGAAAAATTTAATGATGCAAATAAGTCAACGATCGTTAAAAATGAAAGTGTTAAAGATGAACAACTGCATACCGAGCTAATTATTAAAGATGATGACGAAGAGGGTACTAGTGAAAGTAAAATATTAGAAGAAAATAATTCGAGTGATGATGAAATGGAAATATTTGGGCAACAAACCAATATACTTGAATGTGGTGAAAAATTTAATGATGCAAATAACTCAACGGTCGTTAAAAGTGAAAGTTTTAAAGTAGAACAACTGCATACAGAGCTAATTATAAAAGATGATGCTGAAGAGGGTACTAGTGAAAGTGAAATACTAGAAGATTCAAGTGATGTTGGCTATGAAAATAGAGTAGGTGATCATACTCGAGAAAATACAGCAGAAGAATATTTTCCATGTAATATTTGTCAAAAAACATTTATTTCTGAAAAAATTTTATATGCACATCAACGACTTCATACCGGGGAAAAACCATTTTCATGTAATATCTGTAAACATAAAGTTATTCACACTGAGGAAAGGCCATATTCATGTGATGTTTGTGATAAATCGTTTAAAACGAAAGGAGTAAGAGCTAAACACAAACGAATTCATTCTAGAGAGGAGCTTTGTGATTTTGATAAACCGTATTCATGTGATATTTGTGAGAAAAAATTTATTCATCGGATTAGTTTAGTTAATCATAAACTAAATCACACTGGAGTCAAACCATTTTCATGTGATGTTTGTGATAAAAAATTTTTTCAAAAGGGAAATTTAGATAGACATAAACTTATTCACACCGGAGAGAAACCCTTTTCGTGTGATGTTTGCAATAAATCATTTAACGTTCAGTCCAATTTAGTTAAACATAAACTTATTCACGTTGGTGAAACGCCATTTAAATGTGATATTTGTGATAAAGCATTTCTAGTTCAAAGTTACTTAAATAGTCATAAACTTACTCATACTAAAGAAAAACCATTTTCATGTAATGTTTGCAATAAATCATTTAGGAACAAATCTAATTTAGTTGCGCATAAACACAGTCACACTGGATTAAGGCTATTTTCATGTAATATTTGTAGTAAATCATTTATTACTAAAAGGACTTTAGTTATTCATAAACGTTGTCATACTGGACAAAAACCCTATTCGTGTGATGTTTGCGATAAGAAATTTTTGTTAAAACAATATTTAATTCAACATAAAATTGTTCATACGGGAGAAAAAAAATTTTCGTGTAATATTTGTAAAACAGCATTTGCTTATCGAAGCAGCTTAATAAAACATAAAATAATTCACACTGGAGTGAGACGGTTCTTGTGTGATATTTGCGATAGACCTTTTAGAACGAAAAAAGATTTAGTTCAACATGAACGACTCCATAGTGGTGAAAAACCATTTGTATGTAATGTTTGTAATAAAGCATTTGCACAACACAGCAGCTTCTACGCACATAAAAAAGTTCATAATAAGATACTTTGTGATATTTGTGGTAAAATATTTAAGTGTGAACAGGATTTAAATAAACATGAACGGATACATGGTGAAAATCCATTTTCATGTGAAATTTGTAATAAATCATTTAAAAATCAAAGAAATTTAACACATCACAAACGATATATTCATAGAACAAAATTATTTTCATGTGATGTTTGTAAAAAATTATTTTCCATACATAGTCAATTAGTTCGACATAAACAGGTTCACAATAAAATAAAAACGTTTTCTTGTGATGTTTGTAAAAAAGAATTTACTATAAAATCAGATTTAATTAAACATAAACGAATTCATCCGAGAGAAAGATCATTTTCATGTAATGATTGTGATAAGACATTTTTTACATCTTCTCATTTAGCAGCACATAAACGCATTCATACTGGAGAAAAGAAATTTTCATGTAATGTTTGTAAGAAATCATTTTACACAAATGGTTATTTAATTAGACACAAAAAAACGCATACTGGAGAAAAACCTTTTTCATGTGATGTTTGTGATAAATCATTTACGTCCAAGGCCAACTTAGTTGTTCACAAAAGAACACATAGTGGAGAAAGACCGTTTTCATGCGACCTCTGTGATAAAACATTTAAGTGTCGAACTGTTTTACGAGGACATAAACGATGTCACACTAGAGATAAAACTTACTCTTGTTATGTTTGTCATAAAATATTTTTGCAAAGAGGCAATTTAGACAGGCATGAACGCATTCATACAGGACAAAAACCTTATTCATGTGACGTTTGTGATAAAACATTTAACTGTCGTAGTAATTTAGTTCAACATAAACTTATACACACTGGGGAAAGGCCATTTAAATGTGATGTTTGTGATAAAACGTTTAAATCGAAACATGAAACAACTGTGCACAAACAAATTCATACTGGAGAAAAGCCATTTTCATGTGATCTTTGTAGCAAAAAATTTATCACAAAACACGCTTTAACTATACATAAAGTAGCTCATACAAGTGTGAAAGCATTTTCATGTGATATCTGTAAGACAAAATTTTCGCTGAAATCTAATTTAAGTAAACATAAAAAGAGGTTTCATAATTAA
- Protein Sequence
- MSRDCCDINNPILINNVIVLKQKNNSMILKNENITIEQLHSELINKDAADELLLAFQENHTEENFVPSDVYEKTKSNSSDNELGILGQQTNILECARNYSTDDTGEKDIACDEKFNDANKSTIVKNESVKDEQLHTELIIKDDDEEGTSESKILEENNSSDDEMEIFGQQTNILECGEKFNDANNSTVVKSESFKVEQLHTELIIKDDAEEGTSESEILEDSSDVGYENRVGDHTRENTAEEYFPCNICQKTFISEKILYAHQRLHTGEKPFSCNICKHKVIHTEERPYSCDVCDKSFKTKGVRAKHKRIHSREELCDFDKPYSCDICEKKFIHRISLVNHKLNHTGVKPFSCDVCDKKFFQKGNLDRHKLIHTGEKPFSCDVCNKSFNVQSNLVKHKLIHVGETPFKCDICDKAFLVQSYLNSHKLTHTKEKPFSCNVCNKSFRNKSNLVAHKHSHTGLRLFSCNICSKSFITKRTLVIHKRCHTGQKPYSCDVCDKKFLLKQYLIQHKIVHTGEKKFSCNICKTAFAYRSSLIKHKIIHTGVRRFLCDICDRPFRTKKDLVQHERLHSGEKPFVCNVCNKAFAQHSSFYAHKKVHNKILCDICGKIFKCEQDLNKHERIHGENPFSCEICNKSFKNQRNLTHHKRYIHRTKLFSCDVCKKLFSIHSQLVRHKQVHNKIKTFSCDVCKKEFTIKSDLIKHKRIHPRERSFSCNDCDKTFFTSSHLAAHKRIHTGEKKFSCNVCKKSFYTNGYLIRHKKTHTGEKPFSCDVCDKSFTSKANLVVHKRTHSGERPFSCDLCDKTFKCRTVLRGHKRCHTRDKTYSCYVCHKIFLQRGNLDRHERIHTGQKPYSCDVCDKTFNCRSNLVQHKLIHTGERPFKCDVCDKTFKSKHETTVHKQIHTGEKPFSCDLCSKKFITKHALTIHKVAHTSVKAFSCDICKTKFSLKSNLSKHKKRFHN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -