Basic Information

Insect: Chrysoperla carnea
Gene Symbol: -
Assembly: GCA_905475395.1
Location: FR997758.1:10412296-10414056[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 5.2e-07 1.1e-05 25.9 1.0 1 23 110 132 110 132 0.98

2 17 3.6e-05 0.00077 20.2 4.0 1 23 138 161 138 161 0.97

3 17 4.4e-06 9.4e-05 23.0 1.2 1 23 167 189 167 189 0.98

4 17 4.4e-06 9.4e-05 23.0 2.5 1 23 195 217 195 217 0.98

5 17 4.4e-06 9.4e-05 23.0 1.2 1 23 223 245 223 245 0.98

6 17 1.1e-05 0.00024 21.8 0.6 1 23 251 273 251 273 0.98

7 17 2.5e-05 0.00054 20.6 3.1 1 23 279 301 279 301 0.98

8 17 4.4e-06 9.4e-05 23.0 2.5 1 23 307 329 307 329 0.98

9 17 0.00045 0.0097 16.7 5.9 1 23 335 357 335 357 0.98

10 17 1.3e-06 2.8e-05 24.7 2.9 1 23 363 385 363 385 0.98

11 17 4.6e-06 9.8e-05 23.0 1.2 1 23 391 413 391 413 0.98

12 17 3.9e-07 8.4e-06 26.3 1.1 1 23 419 441 419 441 0.98

13 17 0.00055 0.012 16.4 6.4 1 23 450 472 450 472 0.98

14 17 1.3e-06 2.8e-05 24.7 2.9 1 23 478 500 478 500 0.98

15 17 2.7e-06 5.8e-05 23.7 1.2 1 23 506 528 506 528 0.98

16 17 2.2e-06 4.7e-05 24.0 2.6 1 23 534 556 534 556 0.98

17 17 0.00013 0.0028 18.4 0.8 1 23 562 584 562 584 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	5.2e-07	1.1e-05	25.9	1.0	1	23	110	132	110	132	0.98
2	17	3.6e-05	0.00077	20.2	4.0	1	23	138	161	138	161	0.97
3	17	4.4e-06	9.4e-05	23.0	1.2	1	23	167	189	167	189	0.98
4	17	4.4e-06	9.4e-05	23.0	2.5	1	23	195	217	195	217	0.98
5	17	4.4e-06	9.4e-05	23.0	1.2	1	23	223	245	223	245	0.98
6	17	1.1e-05	0.00024	21.8	0.6	1	23	251	273	251	273	0.98
7	17	2.5e-05	0.00054	20.6	3.1	1	23	279	301	279	301	0.98
8	17	4.4e-06	9.4e-05	23.0	2.5	1	23	307	329	307	329	0.98
9	17	0.00045	0.0097	16.7	5.9	1	23	335	357	335	357	0.98
10	17	1.3e-06	2.8e-05	24.7	2.9	1	23	363	385	363	385	0.98
11	17	4.6e-06	9.8e-05	23.0	1.2	1	23	391	413	391	413	0.98
12	17	3.9e-07	8.4e-06	26.3	1.1	1	23	419	441	419	441	0.98
13	17	0.00055	0.012	16.4	6.4	1	23	450	472	450	472	0.98
14	17	1.3e-06	2.8e-05	24.7	2.9	1	23	478	500	478	500	0.98
15	17	2.7e-06	5.8e-05	23.7	1.2	1	23	506	528	506	528	0.98
16	17	2.2e-06	4.7e-05	24.0	2.6	1	23	534	556	534	556	0.98
17	17	0.00013	0.0028	18.4	0.8	1	23	562	584	562	584	0.98

Sequence Information

Coding Sequence: ATGGCAAATAATTCATTTGTTGATACAAATAATTATTTGTTTATTAATAAAGATAATATTAAAGTTGAAAAAGAATTACATACAGAACTAATTATTAAAAATGAAATATTAGATGAAACTATTTTAATGGAAGGTGGACACATTAAAATAAAAGAAGAAGGCAGCAGTGATAGTGTTGTGAGTGTAAAACATGAACCTGTGAGTGATGAAAATGATAAACAATTGTACACAATTAATGATGAAAATATTAAACTTGAAAAAGAATTACATACAGAACTAATTATTAAAGATGAAATATTAGATGGAACTGTTTTAGAAGAAAAACCATTTGTATGTGATATTTGTAATAAAACATTTAATGAGAAAAGTAATTTAGTTAGACATAAACGTATTCACAGCGGAGAAAAGCCATTTTCATGTGATGTTTGTAATAAAAGATGTACTACATCATCGAATTTAGTTAGACATAAAAAACGTATTCACATCGGAGAAAAACCATTTTCATGTGATGTTTGTAATAAAACATTTAATGAGAAAAGTGATTTAGTTAAACATAAACGTATTCACAGCGGAGAGAAACCATTTTCATGTGATGTTTGTAATAAACGATTTACTCGGCGAACTTCCTTAGTTAGACATAAACGTATTCACACCGGAGAAAAACCATTTTCATGTGATGTTTGTAATAAAACATTTAATGAGAAAAGTGATTTAGTTAAACATAAACGTATTCACACCGGCGGGAAACCATTTTCATGTGATATTTGTAATAAAACATTTAATGAGAAAGGTAATTTAGTTTTACATAAACGTATTCACACCGGAGAAAAACCATTTTCATGTGATGTTTGTAATAAAAGATGTACTTCATCATCGAATTTAGCTACACATAAACGTATTCACACCGGAGAGAAACCATTTTCATGTGATGTTTGTAATAAACGATTTACTCGGCGAACTTCCTTAGTTAGACATAAACGTATTCACACCGGAGAGAAACCATTTTCATGTGAAAGTTGTAATAAAACATTTACTCAACAACATCATTTAGTTTTACATAAAAAGATTCATAGTGGAGAGAAACCATTTTCATGTGAAATTTGTGATAAAAGATTTACTTCATCATCGCATTTAGTTACACATAAACGTATTCACAGCGGAGAAAAACCATTTTCATGTGATGTTTGTAATAAAACATTTACTGATAAAAGTGTTTTAGTTAAACATAAACGTATTCACACCGGAGAGAAACCATTTTCATGTGATATTTGTAATAAAACATTTACTCAGAAAGGTGATTTAGTTAGACATAAACGTATTCACACCGGAGCGAAACCATTGAAACCATTTTCATGTGAAAGTTGTAATAAAACATTTACTCACCAACATTATTTAGTTTCACATAAACGTATTCACACCGGAGAGAAACCATTTTCATGTGAAATTTGTGATAAAAGATTTACTTCATCATCGCATTTAGTTACACATAAACGTATTCACAGCGGAGAAAAACCATTTTCATGTGATGTTTGTAATAAAACATTTAATGAGAAAAGTAATTTAATTTCACATAAACGTATTCACAGCGGAGAAAAACCATTTCCATGTGATGTTTGTAATAAAAGATTTACTACATCATCGCATTTAGTTACACATAAACGTATTCACACCGGAGAGAAACCATTTTCATGTGATGTTTGTAATAAAACATTTACTTGGCAAATTAATTTAGTTCGACATAAACGTATTCACAGTCGATAA
Protein Sequence: MANNSFVDTNNYLFINKDNIKVEKELHTELIIKNEILDETILMEGGHIKIKEEGSSDSVVSVKHEPVSDENDKQLYTINDENIKLEKELHTELIIKDEILDGTVLEEKPFVCDICNKTFNEKSNLVRHKRIHSGEKPFSCDVCNKRCTTSSNLVRHKKRIHIGEKPFSCDVCNKTFNEKSDLVKHKRIHSGEKPFSCDVCNKRFTRRTSLVRHKRIHTGEKPFSCDVCNKTFNEKSDLVKHKRIHTGGKPFSCDICNKTFNEKGNLVLHKRIHTGEKPFSCDVCNKRCTSSSNLATHKRIHTGEKPFSCDVCNKRFTRRTSLVRHKRIHTGEKPFSCESCNKTFTQQHHLVLHKKIHSGEKPFSCEICDKRFTSSSHLVTHKRIHSGEKPFSCDVCNKTFTDKSVLVKHKRIHTGEKPFSCDICNKTFTQKGDLVRHKRIHTGAKPLKPFSCESCNKTFTHQHYLVSHKRIHTGEKPFSCEICDKRFTSSSHLVTHKRIHSGEKPFSCDVCNKTFNEKSNLISHKRIHSGEKPFPCDVCNKRFTTSSHLVTHKRIHTGEKPFSCDVCNKTFTWQINLVRHKRIHSR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -