Ccar010862.1
Basic Information
- Insect
- Chrysoperla carnea
- Gene Symbol
- -
- Assembly
- GCA_905475395.1
- Location
- FR997755.1:13977754-13980600[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 2.4e-05 0.00052 20.7 2.7 1 23 98 120 98 120 0.96 2 19 9.6e-06 0.00021 22.0 2.3 1 23 126 148 126 148 0.97 3 19 0.00019 0.0042 17.8 3.6 1 23 154 176 154 176 0.97 4 19 4.7e-06 0.0001 22.9 0.5 1 23 182 204 182 204 0.96 5 19 3.9e-05 0.00085 20.0 0.3 1 23 210 232 210 232 0.96 6 19 2.3e-05 0.0005 20.8 1.9 1 23 238 260 238 260 0.96 7 19 3.7e-06 8.1e-05 23.2 0.5 1 23 266 288 266 288 0.96 8 19 3.7e-06 8.1e-05 23.2 0.5 1 23 294 316 294 316 0.96 9 19 5.2e-05 0.0011 19.6 0.5 1 23 322 344 322 344 0.96 10 19 1.1e-05 0.00023 21.8 0.3 1 23 350 372 350 372 0.96 11 19 1.2e-05 0.00026 21.6 1.6 1 23 378 400 378 400 0.98 12 19 0.00021 0.0045 17.7 2.7 1 23 406 428 406 428 0.98 13 19 3.9e-05 0.00084 20.0 3.3 1 23 722 744 722 744 0.96 14 19 0.0004 0.0087 16.8 2.7 1 23 750 772 750 772 0.96 15 19 0.00023 0.005 17.6 1.8 1 23 778 800 778 800 0.94 16 19 0.0004 0.0087 16.8 2.7 1 23 806 828 806 828 0.96 17 19 3.1e-05 0.00066 20.4 1.2 1 23 834 856 834 856 0.96 18 19 5e-06 0.00011 22.8 2.3 1 23 862 884 862 884 0.97 19 19 1e-06 2.2e-05 25.0 1.9 1 23 890 912 890 912 0.97
Sequence Information
- Coding Sequence
- ATGGCAACGATTCTATTTGAAGAAGTTGAAATTAAAAATGAAATATTTGAAGCCAATGATACAATGAAAGACGGACGAATTAAAAATGAAATTCTAGAAGATAGCAACAGTGTTAAAATGGAAGAAATACTAGAAAACAGTAGTGATTTTAAACAAGAACAAATCAATGAAAACGATACAATTAACAATGACAATTTTAAACTTGAAAGACAATTGAACCCAGAATTATTTAGTGTTGATACTGAAGATCAACAAGCATTCTCAAGTAATGTTCATGCTGTAGAAAAGAAACATTTTTGTGATATTTGCAATAAAACATTTAATAATAATAGTAATTTAGTTGAACATAAATTGACTCATAGTGAAAAAAATACTTTTTCATGTGATAAGTGTGATAAAACATTTAATAGACAAAACAGTTTGAATAAACATAAAATAATACATTCTGGTGATAAACTATTTTTTTGTGACATTTGTAATAAAAAATTTACAAGACATTGGAGTTTAGTTCAACACAAACGAATTCACACTGGAGAAAAACCATTTTTATGTGATATTTGTAATCGGGCATTTACTGACGCGAGTAGTTTAGTTAAACATAAACGAACTCATACTGGTGAAAAACCATATTTATGTGGTATTTGTAGTCGGGCATTTAACGACGCGAGTAGTTTAGTTAAACATAAACGAACTCATACTGGTGAAAAACCATATTTATGTGATATCTGTAGTCGGGCATTTACTCATGCGAGTAGTTTAGTTAAACATAAACGAACTCATACTGGTGAAAAACCATATTTATGTGATATTTGTAATCGGGCATTTACTGACGCGAGTAGTTTAGTTAAACATAAACGAACTCATACTGGTGAAAAACCATATTTATGTGATATTTGTAATCGGGCATTTACTGACGCGAGTAGTTTAGTTAAACATAAACGAACTCATACTGGTGAAAAACCATATTTATGTGATATTTGTAGTCGGGCATTTACTGACGTGAGTAGTTTAGTTAAACATAAACGAACTCATACTGGCGAAAAACCATATTTATGTGATATTTGTAGTCGGGCATTTACTCAGGCGAGTAATTTAGTTGAACATAAACGAACTCACATCGAAATTAAAGTATTTTCGTGTAATCTTTGTACTAAATCATTTGCCAGACAAAATAATTTAGTTCAACATAAACGAATCCATAGTGGAGAAAAACCGTTTGTATGTGAGGTTTGTAGTAAAGCATTTAATTATTTACGTCATCTACTTAATCATAAAAGGACTCATAATGGGACAAAAAGATTTTCATGTCGTAATAAAACATTTAATGAAAAAAGTAGTTTAGTTGAAAATAAATTGGTTCACACCACGAGTGCGAGTGGTGCTAGTGACCACGAGAAAAAGGAACATTTATTGCCAGCTATTTACGAAAATATTAAACTTGACAAACAATTAAATACAGAAGTCACTATTAAAAATGAAGAATATCCCGATAAATCGCTTCATACCGTAGAAAAAACATTTCCACAAAATAAATCTAGCGAAAACGAGAAAAAGGAACATTTATTGCCAGTTATTTACGAAAATATTAAACTTGACAAACAATTAAAAACAGAAGTCACTATAAACCCCGATCAATCGCTTCACGCCATAGAAAAAACATTTTCCCGAAATAAATCTGGTGAATGCGAGCAAAAGGAACATTTATTACCAGTTTTTAGCGAAACTATGAAGCTTGAGAAACAATTAAATACAGAAGTCGCTATAAACCCCTATAAATCGCTTCACACCGTAGAAAAAACATTTTCACGAAATAAATCTAGCGAACACGAGAAAAAGGAACAATTATTGCCAGTTATTTACGAGAATATTAAACTGGAAGAAAGTGTTACAATACAAGATGCACACATTAAAAATACGATATCGAAAGAAAGCAAAACTGATAGCATGGAAGAGATGCCTGATAACAAAAGTGGTATTAGTTGGGAATCTGAACGAAGTCATAAAAATGAGGAGCAAAAATTCAATACAGAAATATTGTCCATTAAAGATGAAATATTAGATGCGAATGTTTTAGAACCACACATTCAAATTAACGATCAACCATTTATATCTCGAAAGTTTGGTTTAATTAAACATAAACGAATTCGCTCGAGAGAAAAAACATTTTTATGTGATATTTGTAGCAGAGCATTTAAGAGTCGAAGTCATTTAAATGAACATAAACGGACTCATACTGGTGAAAAACCATATTTATGTGATATTTGTAGTAAATCATTTAGCCATGGGAGTAGTTTATTTAAACATAAACAAATTCACACGGGAATGAAACCATTTTCGTGTGATGTTTGTAATCTTAGTTTCAATAGACAAAGTAGTTTAAATACACATAAATTTCTTCACACTGGTGAAAAACCATATTTATGTGATATTTGTAGTAAATCTTTTAGCCATGGGAGTAGTTTATTTAAACATAAACAAATTCACACGGGAATGAAACCATTTTCGTGTGATGTTTGTAATCTTAGTTTCAGTAGACAAAGTAGTTTAAATACACATAAACTTCTTCACACTGGTGAAAAACCATTTTCATGTGATATTTGTAACCGAACATTTAATAAGAAAAGTAATTTAAATAAACATAAATTGATTCATAGTGGAGAAAAACCATTTTCATGTGACATTTGTAGTAAATCATTTTCAGATAAAAGTAATTTAAGTAAACATAAACGGGGTCACATTAAGACTGAGATAACACGAGCCCAATCGATTTTAACACATGTTTTTTCAACTGCAAGTATTATTACAAACAATTCAAACAAAAAACTTGTCTTGGAAAATCTTAAATAA
- Protein Sequence
- MATILFEEVEIKNEIFEANDTMKDGRIKNEILEDSNSVKMEEILENSSDFKQEQINENDTINNDNFKLERQLNPELFSVDTEDQQAFSSNVHAVEKKHFCDICNKTFNNNSNLVEHKLTHSEKNTFSCDKCDKTFNRQNSLNKHKIIHSGDKLFFCDICNKKFTRHWSLVQHKRIHTGEKPFLCDICNRAFTDASSLVKHKRTHTGEKPYLCGICSRAFNDASSLVKHKRTHTGEKPYLCDICSRAFTHASSLVKHKRTHTGEKPYLCDICNRAFTDASSLVKHKRTHTGEKPYLCDICNRAFTDASSLVKHKRTHTGEKPYLCDICSRAFTDVSSLVKHKRTHTGEKPYLCDICSRAFTQASNLVEHKRTHIEIKVFSCNLCTKSFARQNNLVQHKRIHSGEKPFVCEVCSKAFNYLRHLLNHKRTHNGTKRFSCRNKTFNEKSSLVENKLVHTTSASGASDHEKKEHLLPAIYENIKLDKQLNTEVTIKNEEYPDKSLHTVEKTFPQNKSSENEKKEHLLPVIYENIKLDKQLKTEVTINPDQSLHAIEKTFSRNKSGECEQKEHLLPVFSETMKLEKQLNTEVAINPYKSLHTVEKTFSRNKSSEHEKKEQLLPVIYENIKLEESVTIQDAHIKNTISKESKTDSMEEMPDNKSGISWESERSHKNEEQKFNTEILSIKDEILDANVLEPHIQINDQPFISRKFGLIKHKRIRSREKTFLCDICSRAFKSRSHLNEHKRTHTGEKPYLCDICSKSFSHGSSLFKHKQIHTGMKPFSCDVCNLSFNRQSSLNTHKFLHTGEKPYLCDICSKSFSHGSSLFKHKQIHTGMKPFSCDVCNLSFSRQSSLNTHKLLHTGEKPFSCDICNRTFNKKSNLNKHKLIHSGEKPFSCDICSKSFSDKSNLSKHKRGHIKTEITRAQSILTHVFSTASIITNNSNKKLVLENLK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -