Ccar002340.1
Basic Information
- Insect
- Chrysoperla carnea
- Gene Symbol
- -
- Assembly
- GCA_905475395.1
- Location
- FR997759.1:15914361-15917102[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 0.0016 0.035 14.9 0.3 3 23 91 111 89 111 0.96 2 23 6.3e-05 0.0014 19.4 0.4 1 23 117 139 117 139 0.98 3 23 6.5e-06 0.00014 22.5 0.4 1 22 145 166 145 169 0.92 4 23 0.004 0.086 13.7 1.7 1 23 181 203 181 203 0.97 5 23 2.5e-05 0.00055 20.6 0.2 1 23 207 229 207 229 0.98 6 23 2e-05 0.00044 20.9 1.2 1 23 235 257 235 257 0.98 7 23 6.8e-05 0.0015 19.3 2.8 1 23 263 285 263 286 0.96 8 23 0.00029 0.0063 17.3 0.7 1 23 304 326 304 326 0.98 9 23 0.0021 0.046 14.6 1.4 1 23 332 355 332 355 0.97 10 23 0.0098 0.21 12.5 1.5 1 23 368 390 368 390 0.98 11 23 5e-05 0.0011 19.7 0.8 1 23 454 476 454 476 0.98 12 23 1.4e-05 0.00029 21.5 1.4 1 23 482 504 482 504 0.98 13 23 1.6e-05 0.00035 21.2 0.7 1 23 542 564 542 564 0.98 14 23 4.5e-05 0.00097 19.8 2.0 1 22 570 591 570 594 0.91 15 23 5.5e-05 0.0012 19.6 1.1 1 23 606 628 606 628 0.97 16 23 1.1e-05 0.00024 21.8 2.7 2 23 631 652 630 652 0.97 17 23 0.00015 0.0032 18.2 1.7 1 23 657 679 657 679 0.98 18 23 0.0058 0.13 13.2 0.6 1 23 702 724 702 724 0.98 19 23 0.11 2.5 9.1 4.7 1 23 730 752 730 752 0.96 20 23 1.2e-05 0.00026 21.6 1.0 1 23 758 780 758 780 0.98 21 23 0.0016 0.034 15.0 0.8 1 23 786 808 786 808 0.98 22 23 3e-06 6.4e-05 23.6 1.1 1 23 814 836 814 836 0.98 23 23 0.0095 0.2 12.5 1.0 1 23 846 868 846 868 0.97
Sequence Information
- Coding Sequence
- ATGAATACAGATTCATTTTACGACGTTAAAACTCCGCAATTTATTGCGGAACATATGAAAATTGAACAATTACTTCCCGAAATATTAATGAAAGATAAAATGGACGACAATGTTTCAATGGCACATGATACTCATGATACTCTGCAAGGCCCAAATGTAAACGTTAAAAACGAACAAAATTTATATACAGAATTAAAGATTAAAAATGAAAATCTTGATGAAACATTCAAAGAACATTCTGCTTGTGAAACCGGGCAAAATTCGATGGCATGCGATCTTTGTGATAAAACATATACTAAACGTACAAGTCTACTTGCTCACAAAATCATCCATACTTCAGAAAAACCCTATTCGTGTGATGTTTGCGAAAAAAAATTTACCGTAAAAGGCAGTTTGATTGATCATAAGCGAATCCATACAGGAGAGAAACCCTATTCATGTGAAATTTGTGGTAAAGCTTTCAGACAAAATGGCACTTTAATTAATCATCGACGAGCATTTAATCATTATTCAAGAGAAACCGTTCACTTAGAAAAACCGTTTTCATGTAATATTTGTCATAAAATATTTACTGATCAAAACATTTTGGATGCGCATAAACAGACGCATATTGGAACTTTTCCATGTGAAATTTGTGGCAAAGCATTTGCAAAAAAATTCGTTTTAGTACGGCATCAATTAACTCATACCGGTGAAAGACGATTTTCCTGTGATCTTTGTGGAAAAACATTTATGTACAAAAAGAATTTAGTTGTACATAAACGTATTCATACTGGAGAAAAACCGTATTCTTGTGATATTTGTGATGAAAAATTTATTCAACAAAGTGGTTTAGTGCATCATAAACAAACTCATCATGGCGACACAAGTTTTTCCGGTGCTAAACAGGTCCATAACCCCGAAAAAAGATTTCCATGTTATACTTGTGGTAAAGAATTTGCACGAAAATTCGTTTTAGATAGACATCAACTAACTCATACCGGTGAAAAACCATTTTCATGTGATATATGTCAGTTGAAATTTTCACGAAAAAATGTGTTAATCGAACATTACAAACGAACGCATAATGATAAATTTTCTCAACAAAGCAGTTTAAAACCTTATACATGTGATGTGTGTGGTGAAAAATTTGAATATCGTTTTGTTTTTCTTAGCCATAAGCGAAGCCATACTGGTGAAGCTACTTTTTCATATATTTCTCCATTTAGTGTTCAAAGTATTTTAGAAAAACATTTTTTAAGTGAAAATTTTACTCAAAATAAATCTACAAATGATTCGGGAGAACCTTCAAATATACACGATTCAGAAGAACCTACAATTATTCATGATTTAGAAGAAAGTGTTACGATAGAAAAACCGTTTTCATGTGATGTTTGTGATAAAAAATTTACCGTAAATCGTAGTTTAATTGAACATAAACGAATTCATACGGGTGAAAAACCATTTTCCTGTGAAATTTGTTATAAAGCTTTTACCCAATACGGTACTTTAATTCGACATAAACGTACTCATGATTCAAGTAAAGAAAAACAATTTTCACGTGATTCAACAGACGGTACTTCTCTAGAAAAACAATTTTCACGTACAAATGATTCAATCGATGGTGGTTCCGTAGAAAAACGTTTTCAATGTGATGTTTGTGAGAAAAAATTCACTGTGAAAAGTAGTTTAGCAGAACATAAACGAATTCATACAGGTGAAAAACCATTTTCTTGTGAAATTTGTAATCGATCATTTACACAACGTAGTACTTTATTAAATCATAAACGATTACGTAATCATTATTCAGGTGGAAATGCGAATATAAAAACACCATTTGCATGTAATATTTGTCGTAAATTATTTACGGATCAAAAAAATTTGATTAGTCATAAAAGAATTCATAATATAAAATGTTGTGTTTGTGGAAAAATCTTTACAAGTAAAAGTCTTCTGTATAGACATCAGAAAATTCACAGTGAAAAACGTTTTTCATGTGATGTTTGTGAGGAAAAATTTCGATTTAAAAAGAATTTAATTGTGCACAAACGTTCTCATACTGGAAAATCTTCGAAAAACTTGAATGAGAAACAAATGGAGAATATAGAAGAAATCGAAAAACCATATGCGTGTGAAATTTGTGGTGAAAAATTTCAATATCGATTCGTTTTTTTAAGCCATCAACGAATTCATACAGATGGAACACTTTTCTCCTGTGATATTTGCCACAGTTCGTTTACTACCCAAAATTGTTTAGACAGCCATAATCTGATGCATAACAAAGGAAAAATTTACCCATGTGACATTTGTGGGAAAAAATTTAAATATAAGAAAAATGTGGAGCTTCATAAACGTGTTCATACCGATGACAAACCGTATTCGTGTGATCTTTGTGACAAAAAATTTACAGCAAAAAGAAGTGTTATTGAGCATAAACGTATCCATACAGGAGAAAAACCATTTTCTTGTGAAATTTGTGGTAGAGCTTTTACACAAAATAGTACGTTATTGAATCATAAACGTTATCATTATGCAAGAGAAAAAGTGAAAGAAACATTTTCATGTGTTATTTGTGGTGAAAAATTTGGTGATAGACCCAGTTTTGTTCGACATAATCACACTCATATTGGACAAATGATTTATAAAGATCTTGAATAA
- Protein Sequence
- MNTDSFYDVKTPQFIAEHMKIEQLLPEILMKDKMDDNVSMAHDTHDTLQGPNVNVKNEQNLYTELKIKNENLDETFKEHSACETGQNSMACDLCDKTYTKRTSLLAHKIIHTSEKPYSCDVCEKKFTVKGSLIDHKRIHTGEKPYSCEICGKAFRQNGTLINHRRAFNHYSRETVHLEKPFSCNICHKIFTDQNILDAHKQTHIGTFPCEICGKAFAKKFVLVRHQLTHTGERRFSCDLCGKTFMYKKNLVVHKRIHTGEKPYSCDICDEKFIQQSGLVHHKQTHHGDTSFSGAKQVHNPEKRFPCYTCGKEFARKFVLDRHQLTHTGEKPFSCDICQLKFSRKNVLIEHYKRTHNDKFSQQSSLKPYTCDVCGEKFEYRFVFLSHKRSHTGEATFSYISPFSVQSILEKHFLSENFTQNKSTNDSGEPSNIHDSEEPTIIHDLEESVTIEKPFSCDVCDKKFTVNRSLIEHKRIHTGEKPFSCEICYKAFTQYGTLIRHKRTHDSSKEKQFSRDSTDGTSLEKQFSRTNDSIDGGSVEKRFQCDVCEKKFTVKSSLAEHKRIHTGEKPFSCEICNRSFTQRSTLLNHKRLRNHYSGGNANIKTPFACNICRKLFTDQKNLISHKRIHNIKCCVCGKIFTSKSLLYRHQKIHSEKRFSCDVCEEKFRFKKNLIVHKRSHTGKSSKNLNEKQMENIEEIEKPYACEICGEKFQYRFVFLSHQRIHTDGTLFSCDICHSSFTTQNCLDSHNLMHNKGKIYPCDICGKKFKYKKNVELHKRVHTDDKPYSCDLCDKKFTAKRSVIEHKRIHTGEKPFSCEICGRAFTQNSTLLNHKRYHYAREKVKETFSCVICGEKFGDRPSFVRHNHTHIGQMIYKDLE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -