Ccar006811.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Chrysoperla carnea
Gene Symbol
-
Assembly
GCA_905475395.1
Location
FR997757.1:53049225-53052278[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 26 7.8e-05 0.0017 19.1 1.4 1 21 36 56 36 57 0.96
2 26 0.0013 0.027 15.3 1.7 1 23 278 300 278 300 0.96
3 26 1.2e-05 0.00027 21.6 0.7 1 23 304 326 304 326 0.98
4 26 0.00024 0.0051 17.6 1.5 1 23 332 354 332 354 0.98
5 26 2.3e-05 0.0005 20.8 1.6 1 23 360 382 360 382 0.98
6 26 0.00012 0.0025 18.5 1.0 1 23 388 410 388 410 0.98
7 26 2.7e-05 0.00058 20.6 0.9 1 23 416 438 416 438 0.98
8 26 0.00012 0.0026 18.5 0.7 1 23 444 466 444 466 0.98
9 26 0.012 0.27 12.2 0.2 5 23 476 494 475 494 0.96
10 26 0.00045 0.0097 16.7 3.5 1 23 500 522 500 522 0.98
11 26 2.7e-05 0.00058 20.6 0.9 1 23 528 550 528 550 0.98
12 26 4.3e-05 0.00094 19.9 4.4 1 23 556 578 556 578 0.98
13 26 0.00035 0.0076 17.0 1.1 1 23 584 606 584 606 0.98
14 26 0.00012 0.0025 18.5 2.5 1 23 612 634 612 634 0.98
15 26 2.3e-05 0.0005 20.8 1.3 1 23 640 662 640 662 0.99
16 26 0.0021 0.046 14.6 0.1 1 23 668 691 668 691 0.94
17 26 0.00025 0.0054 17.5 0.9 1 21 697 717 697 721 0.91
18 26 0.008 0.17 12.8 1.1 1 23 727 750 727 750 0.96
19 26 0.011 0.25 12.3 0.3 1 23 755 777 755 777 0.97
20 26 0.0002 0.0042 17.8 0.6 1 23 783 805 783 805 0.98
21 26 0.004 0.086 13.7 4.2 1 23 811 833 811 833 0.98
22 26 0.0022 0.048 14.5 0.7 1 23 839 862 839 862 0.97
23 26 0.0062 0.13 13.1 2.6 1 22 868 889 868 892 0.91
24 26 0.012 0.27 12.2 7.7 1 23 927 950 927 950 0.97
25 26 0.00048 0.01 16.6 2.9 3 23 960 980 960 980 0.99
26 26 0.00067 0.015 16.1 0.5 1 21 986 1006 986 1007 0.94

Sequence Information

Coding Sequence
ATGGCAAATAAAAATCATTCAAATATTGGTAAAATGGCGCAAATCGTTGAAACTTCAAAGGAAATTTTAATCCAACATAAACGAGTACATACCGGAGAAAAATCATATTCATGTAATGTGTGTGATAAAAAATTTACCACCAAAGGTCGTTTGATGAGACATAAACGTAATAGTTCTTGTAAACGAATTCATGCAAGTGAAAAATCGTATTCGAGTTGTGTTCGAGATACAAAATTTATCGCTCGAGATTGCTTAATTAAACATTTAATATTAGAAGAAAAAAAACGAATTAATCTGAAAGAAAATAATGCCTTTGGAAGTAAGCAGGAAATCAGGAATAACGAAAATAAAAATGTACAAACTGAATTAATAGTTATAGATGAGGACAGTGACGAAGTCGAAGAAATTGAACGAGTACATTTGGAATTAGTTATTGAAGATGAGGACCATGAAAATACTTTAGATGAAATTTATTCAAATACTGATCGAATTTTACAAGAAAATTTTTCAATTAAAAATGAAAATACTGAAGAAGTTATAGAAAATATCCAGACAATAAGAAATGAAGAAATTGGAAGAAAATTAATTATTGAAGATGTAGACTGCGAAAATACCTTAGAAGTTTCTTCAAATACTGACCAAATTTTAAAAGAAAATTATTCCATTAAAAATGAAATAACAAGTAATGAAACACAGACAATAGAAAACTTGAAAATTGAACAATTACATTCGGAATTAATAATAAAAGATGAACACAGTGATGAAATATCAAAAGAAAATTATTGTTATAACGACGACATATTAGAAAAGATTTCAGACGAGAACAAATCATACTTATGTGAAATATGTAAGAAAAAATTTACTTCAAAGACAATTTTGATCCGGCATAAGCGAATTCATACTAAACGATTTTCTTGTAGTGTTTGTGATAAAAAATTTATTGACCAATCAATGTTAAGTGTACATAAACGAGTCCATACCGGGGAGAAACCATACTCTTGTGATGTTTGTGATCAAAAATTTAGAGCCCAATACACGTTAAGTAAACATAAACGAGTCCATACTGGAGAGAAACGATACTCTTGTGATGTTTGTGATAAAAAATTTAGAGCCCAATCCACGTTAAGTAAACATAAACGAATCCATACTGGAGAGAAACCATACTCTTGTGATGTTTGTGATAAAAAATTTAGAGCCCAATACACGTTAAGTATACATAAACGAATCCATACTGGAGAGAAATCATACTCTTGTGATGTGTGTGATAAAAAATTTAGAGTCCAATCAATGTTAAGTGATCATAAACGAGTCCATACCGGAGAGAAACCATACTCTTGTGATGTGTGTGATCAAAAATTTAGAGTCCAATCAATGTTAAGTGAACATAAGCGAGTCCATACCGGAGAGAAACCATACTCTTCTGATGTGTGTGATAAAAAATTTAGAGCCCAATCCACGTTAAGTATACATAAACGAATCCATACTGGAGAAAAACCATACTCTTGTGATGTTTGTGATAAAAAATTTAGACTCCATTACTATTTAACTATCCATAAAAGAATCCATACTGGAGAGAAACCATACTCTTGTGATGTTTGTGATAAAAAATTTAGAGTCCAATCAATGTTAAGTGATCATAAACGAGTCCATACCGGAGAGAAACCATACTCTTGTCATGTGTGTGAAAAAAAATTTAGAACCCAATACGGGTTAAGTAAACATAAACGAATCCATACTGGAGAGAAACCATACTCTTGTGATGTTTGTGATAAAAAATTTAGAGCTCAATTCACGTTAAGTATACATAAACGAATCCATACTGGAGAGAAACCATACTCTTGTGATGTTTGTGATAAAAAATTTCAAAGAAAATACTATTTAACTATGCATAAAAATATTCATACTGGAGCAAAACCATATTCTTGTAAGATTTGCGATAAAAAATTTCGGTTAAAACCCACGTTAATTATACATACACGAACACATACTGGTGAGAAACCATATTCTTGTAAAATTTGTAATAAACCATATGCTTCAAAGGCTGGTTTAAATGGACACAAACAAGCAATTCATGTCGGAGAGAAACCATATTCATGCGATATTTGTAATAAATCATTTAAATATAGCCAAAGTTTAGCGATCCATAAAAAGGCATTTATTCATACACGCGAAAAATCATATTCATGTGTTATTTGTAATGAAAATTTTTACACACTAAGAATGTTAAATACACATAAAAAAAACATTCATAATGAAAAACCATTTTCTTGTGGTGTTTGTGATAAAAAATTTAGATTACTAAACCAAGTAATTCTACATGAACGAATTCATACAGGAGAGAAACCATTTTCTTGTGGTGTTTGTGATAAAAAATTTAGATTACTAAGCTCTTTAATTCTACATAAACGAATTCATACCGGAGAGAAACCATATTCTTGTGATGTTTGTGATAAAAAATTTTTACGAAAAGACCATTTTACTACCCATAAAAATATTCATACTGGAGCGAAACCATATTCTTGCGCTACTTGTAATAAAAAATTTGGAGATTCAAGGGGGCTAAGTGCACATAAAAAAAGAATCCACACCAAAGAAAAGCCATATTCATGTGATGTTTGTGGTAAAAAATTTATGCTTCCATGTTTGTTAAAACGACATCATTTGAAAGGAATCCATTTTCCTACTAGAGAAAAAACAGTTAAATGTGATACATGTGGTAAAAAAATTCCCAAACAAAGAGTGATTTCACATGTACGATTATGTAATAAAAGAAATCCATTTTCATGCGATTTTTGTAAAAAAAGATTTGCTCATCAATGCTACTTAAATCGACATAAAATGAAGGTTCATATTCAAAATGAAGAGGAACAATGGTGGTGTGATAATTGTGATAAAACATTTACTAAACAAATCAATTTTATTAAACATAAACGAAATCATTTTTCAACGAAACTATTTTCATGTGAAATGTGTGATGAAATATTTACAGAGAAAAGTTATTTAGAGAATCATATACACAAAAATTTAATTGTCATAATACAAAAATTGGTCTAG
Protein Sequence
MANKNHSNIGKMAQIVETSKEILIQHKRVHTGEKSYSCNVCDKKFTTKGRLMRHKRNSSCKRIHASEKSYSSCVRDTKFIARDCLIKHLILEEKKRINLKENNAFGSKQEIRNNENKNVQTELIVIDEDSDEVEEIERVHLELVIEDEDHENTLDEIYSNTDRILQENFSIKNENTEEVIENIQTIRNEEIGRKLIIEDVDCENTLEVSSNTDQILKENYSIKNEITSNETQTIENLKIEQLHSELIIKDEHSDEISKENYCYNDDILEKISDENKSYLCEICKKKFTSKTILIRHKRIHTKRFSCSVCDKKFIDQSMLSVHKRVHTGEKPYSCDVCDQKFRAQYTLSKHKRVHTGEKRYSCDVCDKKFRAQSTLSKHKRIHTGEKPYSCDVCDKKFRAQYTLSIHKRIHTGEKSYSCDVCDKKFRVQSMLSDHKRVHTGEKPYSCDVCDQKFRVQSMLSEHKRVHTGEKPYSSDVCDKKFRAQSTLSIHKRIHTGEKPYSCDVCDKKFRLHYYLTIHKRIHTGEKPYSCDVCDKKFRVQSMLSDHKRVHTGEKPYSCHVCEKKFRTQYGLSKHKRIHTGEKPYSCDVCDKKFRAQFTLSIHKRIHTGEKPYSCDVCDKKFQRKYYLTMHKNIHTGAKPYSCKICDKKFRLKPTLIIHTRTHTGEKPYSCKICNKPYASKAGLNGHKQAIHVGEKPYSCDICNKSFKYSQSLAIHKKAFIHTREKSYSCVICNENFYTLRMLNTHKKNIHNEKPFSCGVCDKKFRLLNQVILHERIHTGEKPFSCGVCDKKFRLLSSLILHKRIHTGEKPYSCDVCDKKFLRKDHFTTHKNIHTGAKPYSCATCNKKFGDSRGLSAHKKRIHTKEKPYSCDVCGKKFMLPCLLKRHHLKGIHFPTREKTVKCDTCGKKIPKQRVISHVRLCNKRNPFSCDFCKKRFAHQCYLNRHKMKVHIQNEEEQWWCDNCDKTFTKQINFIKHKRNHFSTKLFSCEMCDEIFTEKSYLENHIHKNLIVIIQKLV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-