Ccar003971.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Chrysoperla carnea
Gene Symbol
-
Assembly
GCA_905475395.1
Location
FR997756.1:87912655-87916557[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 21 0.00017 0.0037 18.0 3.0 1 23 84 106 84 106 0.98
2 21 8.9e-06 0.00019 22.1 3.1 1 23 112 134 112 134 0.98
3 21 0.0054 0.12 13.3 1.3 1 23 141 163 141 163 0.97
4 21 1.8e-05 0.00038 21.1 4.7 1 23 169 191 169 191 0.96
5 21 0.00017 0.0036 18.1 1.5 1 23 197 220 197 220 0.92
6 21 0.0088 0.19 12.6 0.8 1 23 226 248 226 248 0.98
7 21 4.9e-05 0.0011 19.7 2.9 1 23 254 276 254 276 0.96
8 21 0.00016 0.0036 18.1 4.3 1 23 282 304 282 304 0.96
9 21 4.3e-05 0.00092 19.9 3.8 1 23 310 332 310 332 0.98
10 21 5.8e-05 0.0013 19.5 1.4 1 23 338 360 338 360 0.94
11 21 2.2e-05 0.00047 20.8 3.4 1 23 486 508 486 508 0.98
12 21 5.8e-06 0.00013 22.6 2.7 1 23 514 536 514 536 0.98
13 21 0.00016 0.0034 18.1 8.7 1 23 542 564 542 564 0.98
14 21 3.2e-05 0.00069 20.3 1.1 1 23 570 592 570 592 0.95
15 21 5.1e-06 0.00011 22.8 1.9 1 23 598 620 598 620 0.98
16 21 1.1e-06 2.3e-05 25.0 2.0 1 23 626 648 626 648 0.95
17 21 0.00065 0.014 16.2 2.6 1 23 654 676 654 676 0.95
18 21 0.00049 0.01 16.6 2.8 1 23 682 704 682 704 0.96
19 21 1e-05 0.00022 21.9 0.4 1 23 710 732 710 732 0.98
20 21 2.2e-05 0.00048 20.8 1.5 1 23 738 760 738 760 0.94
21 21 2.1e-07 4.5e-06 27.2 2.8 1 23 766 788 766 788 0.98

Sequence Information

Coding Sequence
ATGGCAAATAATTCATTTGATGATATAAACAACCATTTATTTATCCATGAAGAAAATATTGAATTTAAAAAACAATTAAATTCAGAATTATTAATTCAGAATAAAATATTAAAGAACGATAATAATGGTACAATGCAAGATGGACGAATTAAAAATGAAGAAGATAGCAATAACATCAAAATGGAACAATTATTAGACAAAAACAATGATATAACGAGAAAATCTATTAAAGTTGAAAAGCAATCATCATTTTCATGTGAATTTTGTAATAAAACATTTTCGTATCGATTCCATTTGATTGAACATGTTATGATTCATACGGGAGAAAAACCATTTTCATGTGATTTTTGTAATAAAACATTTAGTCGACAAAGAAATTTAGATCAACATAGACGAATCCATACGGACGGTGAAAAACTATTTTCATGTGATATTTGTAAAATAACATATAATACAAAAATTAGTTTAGATAAACATAAATCAAGTCACAGTGTTGAAAAACGATTTTTATGTGATATGTGTAATAAAACATTTTCCACTAGAAGTCATTTATCGGAACATAAACGAACTCATACGGGTGAAAAACCATTTTTATGTGATATGTGTAATGCAACATTTAATCGAAAAAGTAGTTTAAATCGTCATAAACAATTAATGCACAATCGAGAAAAACCATTTTCATGTGATATTTGTAGTGAAAGTTTTAATAAAGAAAGTATTTTTATTCGACATAAACGGATACATAACGGAGAAAAACCATATTTATGTGATGTGTGTGAAAAAACATTTTGTCAAAGTAGTAGTTTATTGGATCATAAACGAACGCATACCGGTGAAAAACCATTTTTATGTGAAATTTGTAGTAAAAAATTTAATACACGTACACATTTAGCACAACATAAACGTACACATACACGAGAAAAACAATTTTCATGTGATATGTGTAATAAAACATTTAATAAACGATCACATTTAGTTGAACATAAACGGATTCATGTTGGTGAAAAACCATTTTTATGTGATATTTGTAGTAAAACATTTACACGTGAAAGTACGTTAATTAAACATAAATTAAATCATATCGATGAAAAATCATTTTCATGTGATATTTATAATAAAAGTGATGTTATTAAATCTAGTGGTGATAGTGTGGAAAGTGAACAAATTCATCGAAAAGAGGAAATTTATTTCTCAGATATTTATGAAAATAATGAAGTTGTAGTTAAAAATGAAGAAAATGTTACAATCACGGAGGATGCACAAATTAAAAATGAAGAAGACAGTAAAAGTGAAATCATCGAAGACATACCGGAAAATATCAGTGATATTAGTTTGGAACCTGAACGAAATCATGAAAATGAAAAACAATTGTCTTCAGTTAATGAGGAAAATATTAAAACTGAAGAATTAAATACGGAACTGTACAAAAGTATCGATGAAACTGAAGAAAAAATGTTTTCATGTGATTTTTGTGATAAAACATTTAATAAACAAAATAATTTAGTTAAACATAAACGATCTCACGATGAAGAAAAATTATTTTCATGTGATATTTGTAATAAAACATTTAATAAACAAAATAATTTAGTTAAACATAAAAGATCACACACGGGGGAAAAACCATTTTCATGTGATATTTGTAATAAAAGTTTTAAACATCAATGTCATTTAATTGAACATAAACGGACTCACACGGGAGAAAAACCATTTTTGTGTGATATTTGTAGTAAAACATTTTCACGTGAAAGTACTTTAGTGAAACACAAACAGATTCACAGTGGAAATAAACCATTTTCCTGTGATATGTGTAACAAAACATTTACGAGTCAAACTAGTTTAATTCAACATAAACGAATACATAACGGAGGAAAACCATTTTTATGTGATATTTGTAACAAAACATTTAATCAACAAAGTCATTTAATTGAGCATCAACGAATTCACACCGGAGAAAAACCATTTTTATGTGATATTTGTAGTAAATCATTTACTCACGGGAGTACTTTAGATAAACATAAACGGATTCACAGTGGCGAAAAACCATTTTCTTGTGAAACTTGTAATAAAACGTTTACACTTCGATATCAATTAGTTCGGCATGCACATATTCATGCTGAAGAAAAACCATTTTCGTGTGATATCTGTTTTAAAGCGTTTACTAGACCCGCTAGTTTAGTCGAACATAAGCGGACACATACGGGAGAACGATCATTTTTGTGTGATGTTTGTAATAAAACATTTAATAAGAAAAGTAATTTAGTTAAACATAAATTAATTCATACGGGAGAAAAACCATTTTCGTGTGATATTTGTAGTAAATCATTTACTGATAAAAGTAATTTAAATAAACATAAACGGAGTCACGTTGGATAA
Protein Sequence
MANNSFDDINNHLFIHEENIEFKKQLNSELLIQNKILKNDNNGTMQDGRIKNEEDSNNIKMEQLLDKNNDITRKSIKVEKQSSFSCEFCNKTFSYRFHLIEHVMIHTGEKPFSCDFCNKTFSRQRNLDQHRRIHTDGEKLFSCDICKITYNTKISLDKHKSSHSVEKRFLCDMCNKTFSTRSHLSEHKRTHTGEKPFLCDMCNATFNRKSSLNRHKQLMHNREKPFSCDICSESFNKESIFIRHKRIHNGEKPYLCDVCEKTFCQSSSLLDHKRTHTGEKPFLCEICSKKFNTRTHLAQHKRTHTREKQFSCDMCNKTFNKRSHLVEHKRIHVGEKPFLCDICSKTFTRESTLIKHKLNHIDEKSFSCDIYNKSDVIKSSGDSVESEQIHRKEEIYFSDIYENNEVVVKNEENVTITEDAQIKNEEDSKSEIIEDIPENISDISLEPERNHENEKQLSSVNEENIKTEELNTELYKSIDETEEKMFSCDFCDKTFNKQNNLVKHKRSHDEEKLFSCDICNKTFNKQNNLVKHKRSHTGEKPFSCDICNKSFKHQCHLIEHKRTHTGEKPFLCDICSKTFSRESTLVKHKQIHSGNKPFSCDMCNKTFTSQTSLIQHKRIHNGGKPFLCDICNKTFNQQSHLIEHQRIHTGEKPFLCDICSKSFTHGSTLDKHKRIHSGEKPFSCETCNKTFTLRYQLVRHAHIHAEEKPFSCDICFKAFTRPASLVEHKRTHTGERSFLCDVCNKTFNKKSNLVKHKLIHTGEKPFSCDICSKSFTDKSNLNKHKRSHVG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-