Ccar003529.1
Basic Information
- Insect
- Chrysoperla carnea
- Gene Symbol
- ZNF236
- Assembly
- GCA_905475395.1
- Location
- FR997756.1:12216946-12225896[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 0.00017 0.0037 18.0 1.4 1 23 96 118 96 118 0.96 2 23 0.025 0.53 11.2 0.2 1 21 124 144 124 145 0.96 3 23 2.7e-05 0.00058 20.5 0.2 2 23 154 175 153 175 0.96 4 23 0.003 0.066 14.1 0.1 3 23 183 203 181 203 0.97 5 23 0.02 0.44 11.5 0.5 2 23 212 233 211 233 0.94 6 23 0.00063 0.013 16.2 2.1 1 23 262 284 262 284 0.97 7 23 0.00025 0.0053 17.5 4.3 1 23 290 312 290 312 0.98 8 23 0.0047 0.1 13.5 0.0 1 23 318 341 318 341 0.97 9 23 0.00039 0.0084 16.9 1.0 1 23 350 373 350 373 0.97 10 23 8.1e-07 1.7e-05 25.3 1.3 1 23 495 517 495 517 0.98 11 23 9.5e-06 0.0002 22.0 4.1 1 23 523 545 523 545 0.99 12 23 0.0019 0.042 14.7 1.0 2 23 586 607 585 607 0.98 13 23 0.0037 0.08 13.8 4.5 1 23 655 677 655 677 0.98 14 23 0.00021 0.0044 17.8 1.3 1 23 683 705 683 705 0.97 15 23 2.4e-06 5.1e-05 23.9 0.8 1 23 711 733 711 733 0.98 16 23 0.006 0.13 13.1 7.9 1 23 739 761 739 761 0.95 17 23 3.3e-07 7.1e-06 26.6 2.4 2 23 979 1000 978 1000 0.98 18 23 5.2e-05 0.0011 19.6 2.5 1 23 1006 1028 1006 1028 0.97 19 23 1.4e-06 3e-05 24.6 0.7 1 23 1035 1057 1035 1057 0.98 20 23 0.0063 0.14 13.1 2.5 1 23 1063 1085 1063 1085 0.96 21 23 0.00052 0.011 16.5 1.0 1 23 1241 1263 1241 1263 0.95 22 23 1.6e-05 0.00036 21.2 2.2 1 23 1269 1291 1269 1291 0.98 23 23 2.5e-05 0.00054 20.7 4.7 1 23 1297 1320 1297 1320 0.98
Sequence Information
- Coding Sequence
- ATGGATTTTAATACTGTTTCTACATCAACAATTGAAAATTCTGAAAAGAATGATAACTTTACATTTATTACAATCCCAATTCAGAATATTGATACAATATCTAGTGATCAATTACAATCGGAATATATCCTAAAAACTTTAGACGATGGTAGTTTTATACTCGAAGGACCACAGGTTCCTGTAGCTCAGATTGGTGAAGTTAATAATTATTTTGACCAGCAGTTATTGGTTGATCCTAAATCAAATGAAATATTAGTCACATCAAATTGTACCGAAAATGATAAATTTGTATGTCAATACTGTAATGAAAAATTTTCTAATAAGATATTGTTGAGAAAACACGAAAAAGGACATATACAAGAAAAGCCTTACAAATGTGAAAAATGTTCGGCTTCATATAATGTTCTTACAAATCTTCAATTACATCAAATGCTTTGTTCAAATGAGGACAAAACTTTAAAATGTCCAATATGTAATAAAATATTTTCCCGTTTTGCAAGTTTAAAATCACATTTGGCAATTCATCAGAGTGATGATCAATTGTTTTGCCCTGAATGTGAAAAACCGTTTGATACACAATTGCAAGTTGACATACATATGAAGACTCATGACAAAATTCGAAAGTATACATGGCAGTGTCGTTTATGCAAAGAAGAATTTTCCAATCAAACTTCCTATAGAAGCCATGTTGCAGAACATAGTAAGATTCGCCAACTATTAAGTACATTAAAAACTAAATCAACTGGTAAACGAGCAGGTTTTAAACGGAATAAAATAGGCAGACATGTGTGTATGGTTTGTTCTAAATCATTTGCCAAGTATAGTTTATTAACTCGACACTCTCGAGTTCATAGTGGTGAAAAACCATTTAAATGTAAAACATGTGGGAGCGCGTTTAGTCAAAAGAATACCTTAAAAATACATATGCATAAACATACTGGAACTCGACCATATAAGTGTTCACTGTGTTCAGCTGCATTTGGTCAAATAGGTAATCTTCGCGTACATATCATTAGAGTTCATTCATTAGAAAGAAATGGAAACACTTTTCCATGCAATGAGTGTGAGTGTATCTTTAGGAAGTTAAGTACATTAAATGCCCATATAAATCGTGTCCACAATAATCTACCTACTGAAAATTCATCGAGTCCATTCAATGTTATAAAAGAAATAATGATGTTGAACAAAGCAATGACATCTGTAAATAATGATAAATCAACTGATATATTACAACAAGCTGTTGAGAATTCAGCTATACAAGATACAACGTCCAGACAAAATTCTTGGGATAATAGTGAGAATAACAAAATAAATAAATCACAAGATACAACCGTTCAAATTAAGAATGAGAATTTATCTGAAACAACATCAGCGACGACCAATGATATTGAAATACGACCAATTGCATTAGCGGATCGAGGACCAGATGGTACACTTCGTAGACATGTTGTTTATCAACGTAAAGTTGGTAATATTCGTTGGCATCAATGTTCGTATTGTCCGAAAGAATTTAAAAAACCGTCGGATTTAGTTAGGCATATACGAATCCATACAAATGAAAAACCTTATAAGTGTCACATTTGTGAAAGAAGTTTTACAGTCAAAACAACCTTAACATCTCATTTGAGAACGCATACAAATCAAAAGACAAAAAAACCATTAAGAGTACAGAAAGAAAATACGATATGTGATGGAAATGGAAATGGAACTGCCGTAGATAATCCAGAGAATTCAACTGAAATTACAGTTACCAATCAATGTCCATTCTGTAATAAAAAAATTCCAAACAAAAAGTTATTAGAATCACACATTAAAAGACATGAATTAAAATCGAATTTAAATTCAAATAAAAGTTTACTTTCGAATATTCAATTGCATGAACCATTTTATGTGACTGATAAAGGTACGATAGAATCATACGTGTCTCCGAAAAATCGTACTAATTATTCAGAGATTCGACCTCATACATGTATGCAATGTAACGCAGCATTCCGTAAAATGAGTCATTTAAAACAACATTTGCGTATACATTCCAATGAGAAACCATTTGCATGCAATATTTGTAACAGAAATTTTCGATCTTCTGGTGTTTTAAAAAATCATAAAAGATCCCATGATGGAATACGACCGTATAGCTGTAAAGAATGTAATCAAGTATTTAGTACAAGTGGAAGTTTGCAAAGACATTTATTATCACATAGTACAAGAAGACCATTTTTATGCCCATATTGTCATAAAAGTTTTAAAACCTTTTCAAATTGTCGAAAACATATAACAACTCACAAACTTGATGTAGCTATGAGCGCTCTTCAGCAAGATGAAGAATCTAAAGCAACAAATGAAACTGTTTTAAATGAAGGAATAAATTATACGACTGATCAAAATACTCAAGCTATCAGTAATGAAGAGGTAAATGTGACAAGTGCTGAAAATTGTATTAATGTATCTGCAACACAGGCGATAAATGTGATAAATACGTTAATTGCAGATGAAACTGGAAACGTTACTCTAGCAGAACTAAACACATCCAATATACCTGTGGATATTCTACTAAATGTTCAAGAATCGTTAGACAAAAATTTAATGCCAACATCGGAAAGTTTAGATGATATTATAACTGAAACAAATGTTGTATCAGAAACTTTGCAAAGCGTTGATGTTGAAAATAACAATCCCATAAATGTTGTATTTACGGTTTCTGAAGAGAATGATAATATGTTATTAGAAGTGTCAAAACAAGAAAATACATTAAATAATTTTCAAGAAGTAACATTAGCCACTGAGGCAGTAACTGCTCCTGATTTTTTTATTAGTAACAAAATCAATAATGCTTTAGAAATTGTACAAGACATTCCAGAAGCACCATCGAATCCTAATAGTATTTTAGTACCTGAAATAATAAATTTTGAGGATGTTAATAAAGTGAAGAAAAATCAGTGCACCTATTGTACAAAAACTTTTCGTAAACCATCCGATTTGACACGTCATATTCGCACACACACGGGAGAAAGACCGTTTTTTTGTAACATTTGTAATAAAAAATTTTCTTTGAATTCTACTCTAAAAAGTCATTTAAAAATTCATGGTTCAATCACCAAAGATTTTGTTTGTACTGTTTGCAGTAAAACTTTTGTTACAAAAGGAAGTTTAAAAGTTCATATGAGATTACATACTGGTTTAAGACCGTTTCCATGTGATTACTGTGGACTGCGATTTCGTACATCTGGTCATAAATTGGCACACCATCAGGCACATTTAAAAGAAATTGAACGACAAAAAAGTGATTCTAACAGTAAAAGTTCAAAAAATTTTCGAACTAAAAATAAAATGCGAAAGTTACATGATGGTATTTTCGTATTAGAAAATGAATCAAATTTAAATTCTGATAATGTCGACAATAAATTGGTTAATGAAACAGATAAAAATAACGAAAATCAAGACTTCGAGACCATTTATTTCGTACAAAAACAAATGGAAATGGAAAATTTATCACAGCTTCAAGAAAATCCAATAAATATAGCTATAAGTCCATTAGATGCGGATGTTTTGAAATCATTGAATTCTCAAGAATGTATGGATTTCAATGAAATTATTGTTCAATCTGTGGATTCACAAAATTTAGTAACTAATAATGAATGTGAAATAACTCAAAATTTAATTCAAACTCAGGATCATAATAATTTTCCTAATGCCGAACAAGAAGTTCAAGAAAAGAAAATGTTTTTATGCGGATTTTGTTTGAAAATTTTTGAAAAGTCTAGTCAGTTACAACGTCATTTACGTATTCATACTGGAGAACGTCCTTTTGTTTGTAATTTTTGTAACAAATCATTCAATCAGAAGAATGCATTAGATCGGCATTTAAAAACTCATTTAGACCATCGACCATATGAATGTCCTCATTGTGAACATAAGTTCACTCAAAAAGGAAATTTAAAAACTCATATCCAAAGGACACATGAATCTGGAAAAGTTACTGTTGATACTTTACTAGCAAGTTGA
- Protein Sequence
- MDFNTVSTSTIENSEKNDNFTFITIPIQNIDTISSDQLQSEYILKTLDDGSFILEGPQVPVAQIGEVNNYFDQQLLVDPKSNEILVTSNCTENDKFVCQYCNEKFSNKILLRKHEKGHIQEKPYKCEKCSASYNVLTNLQLHQMLCSNEDKTLKCPICNKIFSRFASLKSHLAIHQSDDQLFCPECEKPFDTQLQVDIHMKTHDKIRKYTWQCRLCKEEFSNQTSYRSHVAEHSKIRQLLSTLKTKSTGKRAGFKRNKIGRHVCMVCSKSFAKYSLLTRHSRVHSGEKPFKCKTCGSAFSQKNTLKIHMHKHTGTRPYKCSLCSAAFGQIGNLRVHIIRVHSLERNGNTFPCNECECIFRKLSTLNAHINRVHNNLPTENSSSPFNVIKEIMMLNKAMTSVNNDKSTDILQQAVENSAIQDTTSRQNSWDNSENNKINKSQDTTVQIKNENLSETTSATTNDIEIRPIALADRGPDGTLRRHVVYQRKVGNIRWHQCSYCPKEFKKPSDLVRHIRIHTNEKPYKCHICERSFTVKTTLTSHLRTHTNQKTKKPLRVQKENTICDGNGNGTAVDNPENSTEITVTNQCPFCNKKIPNKKLLESHIKRHELKSNLNSNKSLLSNIQLHEPFYVTDKGTIESYVSPKNRTNYSEIRPHTCMQCNAAFRKMSHLKQHLRIHSNEKPFACNICNRNFRSSGVLKNHKRSHDGIRPYSCKECNQVFSTSGSLQRHLLSHSTRRPFLCPYCHKSFKTFSNCRKHITTHKLDVAMSALQQDEESKATNETVLNEGINYTTDQNTQAISNEEVNVTSAENCINVSATQAINVINTLIADETGNVTLAELNTSNIPVDILLNVQESLDKNLMPTSESLDDIITETNVVSETLQSVDVENNNPINVVFTVSEENDNMLLEVSKQENTLNNFQEVTLATEAVTAPDFFISNKINNALEIVQDIPEAPSNPNSILVPEIINFEDVNKVKKNQCTYCTKTFRKPSDLTRHIRTHTGERPFFCNICNKKFSLNSTLKSHLKIHGSITKDFVCTVCSKTFVTKGSLKVHMRLHTGLRPFPCDYCGLRFRTSGHKLAHHQAHLKEIERQKSDSNSKSSKNFRTKNKMRKLHDGIFVLENESNLNSDNVDNKLVNETDKNNENQDFETIYFVQKQMEMENLSQLQENPINIAISPLDADVLKSLNSQECMDFNEIIVQSVDSQNLVTNNECEITQNLIQTQDHNNFPNAEQEVQEKKMFLCGFCLKIFEKSSQLQRHLRIHTGERPFVCNFCNKSFNQKNALDRHLKTHLDHRPYECPHCEHKFTQKGNLKTHIQRTHESGKVTVDTLLAS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -