Ccar019400.1
Basic Information
- Insect
- Chrysoperla carnea
- Gene Symbol
- -
- Assembly
- GCA_905475395.1
- Location
- FR997754.1:1989532-1991721[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 0.00026 0.0055 17.5 5.0 2 23 113 134 112 134 0.96 2 22 9.9e-07 2.1e-05 25.1 1.0 1 23 140 162 140 162 0.98 3 22 0.0026 0.057 14.3 2.4 1 23 168 190 168 190 0.98 4 22 4.4e-05 0.00095 19.9 2.0 1 23 196 218 196 218 0.98 5 22 0.00024 0.0051 17.6 4.3 1 23 224 246 224 246 0.98 6 22 0.00019 0.0042 17.8 2.6 1 23 252 274 252 274 0.98 7 22 5.4e-05 0.0012 19.6 3.0 1 23 280 302 280 302 0.98 8 22 7.4e-05 0.0016 19.2 3.6 1 23 308 330 308 330 0.98 9 22 0.00038 0.0082 16.9 4.7 1 23 336 358 336 358 0.98 10 22 4.4e-05 0.00095 19.9 2.0 1 23 364 386 364 386 0.98 11 22 0.00024 0.0051 17.6 4.3 1 23 392 414 392 414 0.98 12 22 0.00038 0.0082 16.9 4.7 1 23 420 442 420 442 0.98 13 22 5.4e-05 0.0012 19.6 3.0 1 23 448 470 448 470 0.98 14 22 0.00024 0.0051 17.6 4.3 1 23 476 498 476 498 0.98 15 22 0.00038 0.0082 16.9 4.7 1 23 504 526 504 526 0.98 16 22 0.00011 0.0024 18.6 3.5 1 23 532 554 532 554 0.98 17 22 0.006 0.13 13.2 6.2 1 23 560 582 560 582 0.97 18 22 8.6e-06 0.00019 22.1 0.3 1 23 588 610 588 610 0.98 19 22 2.6e-07 5.6e-06 26.9 1.5 1 23 616 638 616 638 0.99 20 22 1.3e-06 2.9e-05 24.6 0.6 1 23 644 666 644 666 0.98 21 22 1.2e-05 0.00026 21.7 6.7 1 23 672 694 672 694 0.98 22 22 2.3e-05 0.0005 20.8 3.0 1 23 700 722 700 722 0.97
Sequence Information
- Coding Sequence
- ATGACGAGTAATACATTTCAAAACGAAAATACTGATTTATTTATCAGTGAAGAACAAATAAATAGAAACAAATTAAACGAATTAAATACAGAAGTGATTATTAAAAATGAAATATTTGATGTGAGTGAAAGTGATTTAATAGATTATAAAGAACCATTCAAAGGTGGACACGAAGGAATTAAAGAAGAGGGAATACTTGAAGAAACTGATATTAAAATGGAGAATGAACGAATTAAACTTGAACAACAATTAAATACTGAATTAATTATTAAAGATGAAATATTTAATGAAAATGATTTAGAATTTCATAATATTGAAAATGAAGAAACATCTTTAACATGTGAAGTGTGTGATAAAACTTTTAATAAAAAACACCATTTAACTTCCCATAAACTAATTCATACTGATAAAAAACGTTTTTCATGTGAAGTGTGTGATAAATCATTTAATAGAAAAAACAGTTTAATTCGGCATGAACGAATTCATACTGTTGAAAAAACTTTTTCCTGTGAAATTTGTGTTAAATCGTTTACTTGTAAACAGAATTTGATTGTACATAAACGAATTCATAGCGGAGAAAAACCATTTTCTTGTGAAGTTTGTGATCAATCATTTACACATCGAATCAGTTTAAAAACACATGAACGAATTCATACCGGGGAAGTCCCGTTTTCTTGTGATGTTTGTAACAAAAACTTTAATAAAAAATGTAATTTAATTCAACATAAACGTATTCATACTGGTGAAAAAACGTTTTCCTGTGAAATTTGTGATAAATCGTTTACTTGTAAACAGAATTTGATTGTACATAAACGAATTCATAGCGGAGAAAAACCATTTTCTTGTAAAGTTTGTGATCAATCATTTACGCATCGAATCAGTTTAAAAACACATGAACGAATTCATACCGGGGAAGTCCCGTTTTCTTGTGATGTTTGTAACAAAAACTTTAATAAAAAATGTAATTTAATTCGGCATGAACGAATTCATACTGTTGAAAAAACGTTTTCCTGTGAAATTTGTGATAAATCGTTTACTTGTAAACATAATTTAATTGTACATAAACGAATTCATAGCGGAGAAAAACCATTTTCTTGTGAAGTTTGTGATCAATCATTTACGCATCGAATCAGTTTAAAAACACATGAACGAATTCATACCGGGGAAGTCCCGTTTTCTTGTGATGTTTGTAACAAAAACTTTAATAAAAAATGTAATTTAATTCAACATAAACGTATTCATACTGGTGAAAAAACGTTTTCCTGTGAAATTTGTGATAAATCGTTTACTTGTAAACATAATTTAATTGTACATAAACGAATTCATAGCGGAGAAAAACCATTTTCTTGTAAAGTTTGTGATCAATCATTTACGCATCGAATCAGTTTAAAAACACATGAACGAATTCATACCGGGGAAGTCCCGTTTTCTTGTGATGTTTGTAACAAAAACTTTAATAAAAAATGTAATTTAATTCAACATAAACGTATTCATACTGGTGAAAAAACGTTTTCCTGTGAAATTTGTGATAAATCGTTTACTTGTAAACATAATTTAATTGTACATAAACGAATTCATAGCGGAGAAAAACCATTTTCTTGTAAAGTTTGTAATCAATCATTTACGCATCGAATCAGTTTAAAAACACATGAACGAATTCATACCGGGGAAGTCCCGTTTTCTTGTGATGTTTGTAACAAAAACTTTAATAAAAAATGTAATTTAATTCAACATAAACATATTCATACTGGTGAAAAACCATTTTCATGTGAATTGTGTGATAAATCATTTAATAGAAAAATCGATTTAATTGTACATGAACGAATTCATACAGGGGAAAAACCTTATTCATGTGACATGTGTGATAAAACATTTGCACAGACCAGTAATTTAATTCGACATAAACGAACTCATACTGGTGAAAAACCTTTTCCATGTGAACTGTGTGATAAAACATTTACACAAAAAACCAGTTTAATTGTACATGAACGAACTCATACTGGTGAAAAACCTTTTTCATGTGACATGTGTAATAAAACATTTACGCATAATTATCATTTAATTCGACATAAACGAATTCATACTGGTGAAAAACCATTTTTCTGTGAACTGTGTGATAAAACATTTACACAAAAAAACAGTTTAATTCATCATGAACGAATTCATACAGGTGAAAAACTTTTTCCATGA
- Protein Sequence
- MTSNTFQNENTDLFISEEQINRNKLNELNTEVIIKNEIFDVSESDLIDYKEPFKGGHEGIKEEGILEETDIKMENERIKLEQQLNTELIIKDEIFNENDLEFHNIENEETSLTCEVCDKTFNKKHHLTSHKLIHTDKKRFSCEVCDKSFNRKNSLIRHERIHTVEKTFSCEICVKSFTCKQNLIVHKRIHSGEKPFSCEVCDQSFTHRISLKTHERIHTGEVPFSCDVCNKNFNKKCNLIQHKRIHTGEKTFSCEICDKSFTCKQNLIVHKRIHSGEKPFSCKVCDQSFTHRISLKTHERIHTGEVPFSCDVCNKNFNKKCNLIRHERIHTVEKTFSCEICDKSFTCKHNLIVHKRIHSGEKPFSCEVCDQSFTHRISLKTHERIHTGEVPFSCDVCNKNFNKKCNLIQHKRIHTGEKTFSCEICDKSFTCKHNLIVHKRIHSGEKPFSCKVCDQSFTHRISLKTHERIHTGEVPFSCDVCNKNFNKKCNLIQHKRIHTGEKTFSCEICDKSFTCKHNLIVHKRIHSGEKPFSCKVCNQSFTHRISLKTHERIHTGEVPFSCDVCNKNFNKKCNLIQHKHIHTGEKPFSCELCDKSFNRKIDLIVHERIHTGEKPYSCDMCDKTFAQTSNLIRHKRTHTGEKPFPCELCDKTFTQKTSLIVHERTHTGEKPFSCDMCNKTFTHNYHLIRHKRIHTGEKPFFCELCDKTFTQKNSLIHHERIHTGEKLFP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -