Ccar010886.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Chrysoperla carnea
Gene Symbol
-
Assembly
GCA_905475395.1
Location
FR997755.1:95786928-95788985[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 18 2.7e-06 5.8e-05 23.7 2.3 1 23 117 139 117 139 0.98
2 18 8.1e-06 0.00017 22.2 0.5 1 23 145 167 145 167 0.97
3 18 1.7e-05 0.00036 21.2 0.8 1 23 173 195 173 195 0.97
4 18 2.7e-06 5.9e-05 23.7 2.2 1 23 201 223 201 223 0.99
5 18 4.7e-06 0.0001 22.9 0.6 1 23 229 252 229 252 0.97
6 18 7.8e-05 0.0017 19.1 4.1 1 23 258 280 258 280 0.98
7 18 4.1e-06 8.8e-05 23.1 0.4 1 23 310 332 310 332 0.97
8 18 1.6e-06 3.4e-05 24.4 1.1 1 23 338 360 338 360 0.97
9 18 1.2e-05 0.00026 21.7 5.4 1 23 366 388 366 388 0.98
10 18 4e-06 8.6e-05 23.2 0.6 1 23 394 416 394 416 0.98
11 18 0.00014 0.003 18.3 2.0 1 23 422 444 422 444 0.98
12 18 4.8e-06 0.0001 22.9 1.7 1 23 450 472 450 472 0.98
13 18 4.7e-05 0.001 19.8 0.3 1 23 478 500 478 500 0.98
14 18 0.00031 0.0066 17.2 4.1 2 23 507 528 506 528 0.96
15 18 6.5e-06 0.00014 22.5 4.4 1 23 534 556 534 556 0.99
16 18 3e-05 0.00064 20.4 6.6 1 23 562 584 562 584 0.98
17 18 2.6e-07 5.5e-06 26.9 0.8 1 23 590 612 590 612 0.98
18 18 2.7e-05 0.00058 20.5 6.0 1 23 618 640 618 640 0.98

Sequence Information

Coding Sequence
ATGGCAAATAATGAATTTAATAATTTTAATAATAAATCTGCTAACTTAGAAAACATTAAACTTGAACAAGAATTATACGCAGAAATTATTGAAGGAAGTGAAAAAATGGAGTTTGTAAAAATTAAAGAAGAAATGCCTGAAGAATCTTTTACAAGGGAAGATGTATTCATTGGACAAGAAATACCAGAAGAAGATTTTGAAAATGTACTGTTTAAAGAAGAAATGCAAGAAGAAACCACCGATACTGTTACAATGGAATATGGATGGGTTGGTGAAGAATTCATTGAAAATGGAATAATAGATGAAACTATTTTGGAAAATCGACGAATTAATAGTGGAGATAAACGTTTCTCTTGTGAAGTTTGTAATAAAACATTTACTCTGAATAGTCATTTAATGAAACATATACAAATTCATACTGGGGTTAAACCCTTCTCATGTGATATTTGTGATAAGGCATTTAATCGGCGACAGAGTTTAATGAGACATGAACTTATTCATACCGGTGAAAAACCTTTTTCTTGTGAAGTTTGTGATAAAAAATTTAATAGACAAAGTGTTTTAATTCGGCATAAACTCGTTCACACCGGGGAAAAATCTTATTCATGTGAAATTTGTGATAAAATATTTGCTCAAAAGCAACATTTAATTACACATAAACGAACACATACCGGAGAAAAACCATTTTCATGTGAAATTTGTAATAAAAAGTTCACTCAACGAGGAAGTTTAACTGAACATATTGAAAGAATTCATATTACGGATAAATCTTATTCATGTGATGTTTGTAATCAGATATTTAGTCAGAAAAATCATTTAAAGCAACATAAACGAAATCATTTTCAAGGAAAACCATTGAATATGAAGTCTGAAACAGGAATTAAAGAAGAAGTTTGTGATACAACGTACACTCTTGATGTAAAACCCTTCTCATGTGATGTTTGTGATAAAGTATTTAATCAACAACAGAGTTTAATTAGACATACACTTATTCATACCGGTGAAAAACCATTTTCTTGTGAAGTTTGTGATAAAAAATTTAATAGACAAAGTGCTTTAACTCGACATAAACTAATACACACCGGACAAAAATCGTATTCATGTGAAGTTTGTGATAAAACATTTATACATAAACATCATTTAATTAAACATGCAAGAATTCATAGCGGAGAAAAACCTTATTCTTGTGAAATTTGTGCTAAAACATTTAGTGATACAAGTAGTTTAATTCGACATAAGCGAATTCATACTGGTGAAAAACCATATTCATGTGAAATTTGTGATAAAAAATTTACATTTAAACACGGTTTAGTTGAGCATAATCGAATTCATACTGGTGAAAAACCATTTTCATGTGAAATTTGTAATAAATCATTTACGGTCAGTGGTCATTTAGTTATACATAAACGAACTCATACTGGTGAAAAACCATTTTCTTGTGATATATGTGATAAAAAATACACTGCACAAGGTGATTTAACAGTACATAAACGAATTCATTTTCGAGAAAAACCTCTGTCTTGTGACGTTTGTACGAAAACATTTTATCATAAACGTAATTTAAGTACACATAAACGCATTCATACTGGAGAAAAACCTTATTCTTGTGAAATTTGTAAGAAAAAATTTAATGATAGAAGAAATTTATTTAAACATAAACGAACACATTTTCGAGAAAAACCATTTTCATGTGAAATTTGTAATAAAACATTTATTCATAAACATCATTTAATTAAACATGAAAGAATTCATAGCGGAGAAAAACCTTATTCTTGTGAAATTTGTGATAAAACATTTAGTGATACAAGTAGTTTAATTCGACATAAGCGAATTCATACTGGTGAAAAACCTTATTCATGTGAAATTTGTGATAAGAAATTCAGTCAAAAACATCATTTAAATGGACATAAACGAAGTCATTTTCCGGAAAAACATTTGAATGTGAAATCTGAAACTGTTGCATTAGAACATGACGAAATTCAACAAGAAATACCAGAGGGAATTGTTAAAATTGAAAATGTATTTATTAAAGAAGAAATATCAGATGAAAATTTTTGA
Protein Sequence
MANNEFNNFNNKSANLENIKLEQELYAEIIEGSEKMEFVKIKEEMPEESFTREDVFIGQEIPEEDFENVLFKEEMQEETTDTVTMEYGWVGEEFIENGIIDETILENRRINSGDKRFSCEVCNKTFTLNSHLMKHIQIHTGVKPFSCDICDKAFNRRQSLMRHELIHTGEKPFSCEVCDKKFNRQSVLIRHKLVHTGEKSYSCEICDKIFAQKQHLITHKRTHTGEKPFSCEICNKKFTQRGSLTEHIERIHITDKSYSCDVCNQIFSQKNHLKQHKRNHFQGKPLNMKSETGIKEEVCDTTYTLDVKPFSCDVCDKVFNQQQSLIRHTLIHTGEKPFSCEVCDKKFNRQSALTRHKLIHTGQKSYSCEVCDKTFIHKHHLIKHARIHSGEKPYSCEICAKTFSDTSSLIRHKRIHTGEKPYSCEICDKKFTFKHGLVEHNRIHTGEKPFSCEICNKSFTVSGHLVIHKRTHTGEKPFSCDICDKKYTAQGDLTVHKRIHFREKPLSCDVCTKTFYHKRNLSTHKRIHTGEKPYSCEICKKKFNDRRNLFKHKRTHFREKPFSCEICNKTFIHKHHLIKHERIHSGEKPYSCEICDKTFSDTSSLIRHKRIHTGEKPYSCEICDKKFSQKHHLNGHKRSHFPEKHLNVKSETVALEHDEIQQEIPEGIVKIENVFIKEEISDENF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-