Ccar003563.1
Basic Information
- Insect
- Chrysoperla carnea
- Gene Symbol
- -
- Assembly
- GCA_905475395.1
- Location
- FR997756.1:87873546-87876311[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 0.00015 0.0032 18.2 0.9 1 23 73 95 73 95 0.97 2 22 1.6e-06 3.4e-05 24.4 2.2 1 23 101 123 101 123 0.98 3 22 6.4e-05 0.0014 19.4 0.7 1 23 129 151 129 151 0.97 4 22 1.2e-05 0.00027 21.6 0.8 1 23 157 179 157 179 0.98 5 22 3.5e-05 0.00075 20.2 2.1 1 23 185 207 185 207 0.96 6 22 8.1e-05 0.0017 19.0 3.1 1 23 213 235 213 235 0.96 7 22 0.00012 0.0026 18.5 2.8 1 23 241 263 241 263 0.98 8 22 6.7e-05 0.0014 19.3 3.3 1 23 269 291 269 291 0.98 9 22 0.24 5.2 8.1 2.3 1 23 297 319 297 319 0.95 10 22 0.00013 0.0029 18.4 2.8 1 23 325 347 325 347 0.98 11 22 0.00072 0.015 16.1 1.6 1 23 353 376 353 376 0.95 12 22 0.00013 0.0028 18.4 0.5 1 23 381 403 381 403 0.98 13 22 8.9e-06 0.00019 22.1 0.8 1 23 409 431 409 431 0.98 14 22 4.3e-05 0.00092 19.9 2.9 1 23 600 622 600 622 0.96 15 22 0.00016 0.0034 18.1 2.7 1 23 628 650 628 650 0.96 16 22 3.1e-06 6.8e-05 23.5 3.5 1 23 656 678 656 678 0.95 17 22 1.1e-05 0.00024 21.7 4.3 1 23 684 706 684 706 0.96 18 22 3.2e-05 0.0007 20.3 3.2 1 23 712 734 712 734 0.96 19 22 0.00097 0.021 15.6 2.3 1 23 740 762 740 762 0.98 20 22 0.00015 0.0033 18.2 5.0 1 23 768 790 768 790 0.98 21 22 4.9e-05 0.0011 19.7 3.0 1 23 796 818 796 818 0.97 22 22 3.6e-07 7.7e-06 26.5 2.0 1 23 824 846 824 846 0.97
Sequence Information
- Coding Sequence
- ATGGCATATAATTCATTTGAAGAAGTCGAAATTAAAAATGAAATTCAAGAAGACAGCAACAGTGTTAAAATGGAAGAAATACTAGAAAATGACAGTGATTTAAAATATGAACAAAATAATGAAAATGATACAATTAACAACAAAAATGTTAAACTTGAAAGTGAAAGTGAATTCAACACAGAATTATTTAGTGATGACAATGAAGATCAACAATCATTTTCATGTAATGCTTGTGACAAAACTTTTTCCAGGCGTTGGGGATTAGTTCAACATAAACGACTTCATTCTGAAGAAAACCAATATTTTTGTGATATTTGTAATAAAACATTTAATAATAAAAGTAATTTAATGGAACATAACCGAACTCATACTAAAGAAAAAGCATTTCCTTGTGATAAGTGTGATAAAACATTTAACAAACAAAACAGTTTGGTTATACACAAAATGATACATTCTGGGAATAAACCATTTTCATGTGACATTTGTAATAAAACATTTAACAGAAATAGCATTTTAGTTCGACACATGCAAATTCACACGGGAGAAAAACCATTTTTATGTGATATATGTGATAAACAATTTAACACAAATTGTAGTTTAGTTCAACATATGCGAATTCACACCGGAGAAAAACCGTTTTTATGTGATATATGTAATAGAAAATTTGTTAATAAAACTCATTTAATTGAACATAAACGAACTCATACAGGAGAAAAACCATTTTCATGTGACATTTGTGATAAAACATTTAACAGAAATTGGTGTTTAGATCAACACAAGCGAATTCATACCGGAGAAAAACCATTTTCATGTGACATATGTAATAAAAAATATGTGAATCGAACTCATTTAATCGAACATAAACGAACTCATACGGGAGAAAAGCCATTTTTATGTGAATTGTGTAACGCTACTTTTCATCGTAAAAGTATTTTAGTTAAACATAAAATGTCACATACTGGTGAAAAACCATTTTCATGCGATGTTTGTGAAAAAACATTTAATAGACATTGGAGTTTACTTGAACATAAACGGACTCATACTGGTGAAAAACCATATCTATGTGATATTTGTAGTAAATCATTTACCTATAAGAGCCGCTTGATTGGGCATAAAAAGACTCAACATGATAAAGAAAAATTTTCATGTGACATTTGTAATAAATCATTTCCTCTTAGTCAGCAGTTACTTGAACATAAACGAATACACTCCGAAGTTAAAGTATTTTCGTGTGATATTTGTAATAAATCATTTGCCAGACAAAATAATTTAGATGTACATAAACGATTACACAGCGGAGAAAAACCATTTTTATGTGATGTTTGTAAAGCGATTGCTAAAAATGAGGACTATTTACATTCCGATAAATCGCTTTACACCGAAGAAAAAGCATTTTCACGAAATAAATCTGATGAACACGAGAAAAAGGAACATTTATTGCCCGTTTTTCACGAAAATATTAAGCTTGAAAAACAATTAAATTCGGAAGTCATTATTAAAGATGAAGATTGCGTTAAAATACAAGAAGTACAAATTAAAAATGAAATATTGGAAGAAAGCAACAGCGATAGCATGGAAGAGATGCCAGATAACAAAAGTGATATTAGTTGGGAACCTGAACCAAATCATGAAAATGGGAACAGATTAAATACAGAAATATTATCAATTAAAGATGAAATATTAGACCCGAGTGTTTTAGAACCACAAATTCAAATTACCGATAAACCATTTGTATCTCCAAAAATAAAAAGAAAAGGTTCAATCAAACATAAACGGACTTGTACGGAAGAAAAATCATATTTATGTGATATTTGTAGTAAAGCATTTACAAGCCAAAGTCATTTTAATGAACATAGTAGGACTCATACGGGGGAGAAACCATATTTATGTGATATTTGTAGCAAGTCATTTACCCACGGGAGTAGTTTAGTTAAACATAAACGATCACACACGGGAGAAAAACCATTTTTATGTAATATTTGTAATAAAACATTTACGAGTCAAAGTCATTTAAATGAACATAAACGGATACACTCTGGAGAAAAACCATATTTATGCGATATTTGTAGCAAGTCATTTACTCACAAGAGTACTTTAGTAAAACATAAACGGACTCACAGTGGAGAAAAACCATTTTTATGTGATATTTGTAATAAAAAATTTAGTAGGCAACACGATTTAGCTCAACATAATCGGACTCATACTGGAGAAAAACCTTTTTCATGTGATACATGTAATAAAAAATTTTCTATTAGTAGGCAACTACTTGAACATAAACGCAGTCACACCGGAGAAAAACCGTTTTCGTGTGATATGTGTAATCATACTTTCAATAGAAAAAGTAGTTTAAATTCACATAAACGTCTCCATACTGGTGAAAAACCATTTTCATGTGAGACTTGTAGCAGAACATTTAATAAGAAAAGTAATTTAAATAAACATAAATTGATTCACAATGGCGTAAAACCATTTTCATGTGATATTTGTAGTAAATCATTTTCCGATAAAAGTAATTTAACTAAACATAAACGGGGTCACATTAAGACTGAGGTTTCACGAGCTCAATCGATTTTAACACACGTTTTTTCAACGGCACATTTGTTAGAATGA
- Protein Sequence
- MAYNSFEEVEIKNEIQEDSNSVKMEEILENDSDLKYEQNNENDTINNKNVKLESESEFNTELFSDDNEDQQSFSCNACDKTFSRRWGLVQHKRLHSEENQYFCDICNKTFNNKSNLMEHNRTHTKEKAFPCDKCDKTFNKQNSLVIHKMIHSGNKPFSCDICNKTFNRNSILVRHMQIHTGEKPFLCDICDKQFNTNCSLVQHMRIHTGEKPFLCDICNRKFVNKTHLIEHKRTHTGEKPFSCDICDKTFNRNWCLDQHKRIHTGEKPFSCDICNKKYVNRTHLIEHKRTHTGEKPFLCELCNATFHRKSILVKHKMSHTGEKPFSCDVCEKTFNRHWSLLEHKRTHTGEKPYLCDICSKSFTYKSRLIGHKKTQHDKEKFSCDICNKSFPLSQQLLEHKRIHSEVKVFSCDICNKSFARQNNLDVHKRLHSGEKPFLCDVCKAIAKNEDYLHSDKSLYTEEKAFSRNKSDEHEKKEHLLPVFHENIKLEKQLNSEVIIKDEDCVKIQEVQIKNEILEESNSDSMEEMPDNKSDISWEPEPNHENGNRLNTEILSIKDEILDPSVLEPQIQITDKPFVSPKIKRKGSIKHKRTCTEEKSYLCDICSKAFTSQSHFNEHSRTHTGEKPYLCDICSKSFTHGSSLVKHKRSHTGEKPFLCNICNKTFTSQSHLNEHKRIHSGEKPYLCDICSKSFTHKSTLVKHKRTHSGEKPFLCDICNKKFSRQHDLAQHNRTHTGEKPFSCDTCNKKFSISRQLLEHKRSHTGEKPFSCDMCNHTFNRKSSLNSHKRLHTGEKPFSCETCSRTFNKKSNLNKHKLIHNGVKPFSCDICSKSFSDKSNLTKHKRGHIKTEVSRAQSILTHVFSTAHLLE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -