Ccar016815.1
Basic Information
- Insect
- Chrysoperla carnea
- Gene Symbol
- -
- Assembly
- GCA_905475395.1
- Location
- FR997758.1:65128977-65131555[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 4.9e-05 0.001 19.7 2.5 1 23 86 108 86 108 0.98 2 22 5.1e-05 0.0011 19.7 0.5 1 23 113 135 113 135 0.98 3 22 2.2e-05 0.00046 20.9 1.2 3 23 143 163 141 163 0.97 4 22 0.00014 0.0031 18.3 1.4 1 23 169 191 169 191 0.98 5 22 1.7e-05 0.00037 21.2 0.8 2 23 198 219 197 219 0.96 6 22 2.9e-06 6.3e-05 23.6 2.3 1 23 225 247 225 247 0.98 7 22 7.3e-05 0.0016 19.2 5.0 1 23 253 275 253 275 0.98 8 22 0.0011 0.024 15.5 0.3 5 23 285 303 284 303 0.96 9 22 0.0005 0.011 16.6 3.1 1 23 309 331 309 331 0.98 10 22 0.0005 0.011 16.6 3.1 1 23 337 359 337 359 0.98 11 22 2.6e-06 5.6e-05 23.7 1.4 1 23 365 387 365 387 0.98 12 22 7.3e-05 0.0016 19.2 5.0 1 23 393 415 393 415 0.98 13 22 0.00014 0.0031 18.3 1.4 1 23 421 443 421 443 0.98 14 22 0.00013 0.0028 18.4 5.0 1 23 449 471 449 471 0.98 15 22 1.7e-05 0.00037 21.2 0.8 2 23 478 499 477 499 0.96 16 22 0.00029 0.0062 17.3 4.3 1 23 505 527 505 527 0.98 17 22 0.0011 0.024 15.5 0.3 5 23 537 555 536 555 0.96 18 22 1e-05 0.00022 21.8 1.1 1 23 561 583 561 583 0.98 19 22 2.6e-06 5.6e-05 23.7 1.4 1 23 589 611 589 611 0.98 20 22 0.00037 0.008 17.0 4.9 1 23 617 639 617 639 0.98 21 22 0.0033 0.07 14.0 0.3 5 23 649 667 648 667 0.96 22 22 0.00054 0.012 16.4 2.2 1 23 673 696 673 696 0.97
Sequence Information
- Coding Sequence
- ATGAAAAATGAAGAATTATGTTTAGAATTGAGAATCAAAGAAGAGATTAATGACGAAATATTATATGAAGTGGATTTCAAAAATGATGAAATTTGTGACTATATTATTAGTGATAATAAAATAATACTAGAAAATAAAAGAATTAAAATTGAACGAAAGTTACATTCAGAATTAATTATAAAAGATGAAAGTTATGATGAAATGTTTGAAGAAACTGAAACTGATTCAAATTGTCGAGAATTGGTCAAAGAAAATTATTCTTGTGATGTTTGTGATAAAATATTTACAACTAAAATTAAATTAAGTAAACATAAAAAAAAACACAAGGAAAAATTATATTCATGTGAAGTGTGTGATAAAAAATTTACCTTTCCAAGTGTTTTAGTTCAACATAAACGAATTCATACTGGAGAAAAACCATTGTTCTGTGATATTTGTGAGAAAAAGTTCAATCGAAAAGACAGTTTAGTTGTACATAAACGAACACATACTGGAGAAAAACCATTTTCTTGTGATGTTTGTGAGAAAAAATATAGCCAATCTCAAAGTTTAGTTCTACATAAACGAACACATACTGGCGAAAAACCATTGTCCTGTGATATTTGTGAGAAAAAGTTTAATCGAAAAGATAATTTAGTTGTACATAAACGATTACATACTGGAGAAAAACCATTCTCTTGTGATGTTTGTAAGAAAAAGTTTAATAGAAAAGACAATTTAGTTGTTCATAAACGAACACATACTGGAGAAAAACCATTCTCTTGTAATATTTGTAAGAAAAAATTTAACCACTCTCAAAATTTAGTTCTACATAAACGAACACATACTGAAGAAAAACCATTGTCCGGTGATATTTGTGAGAAAAAGTTTAATCGAAAAGACAATTTAGTTGTACATAAACGATTACATACTGGAGATAAACCATTCTCTTGTGATGTTTGTGAGAAAAAATATAGCCACTCTCAAAGTTTAGTTCTACATAAACGAACACATACTGGAGAAAAACCATTTTCTTGTGATGTTTGTGAGAAAAAATATAGCCACTCTCAAAGTTTAGTTCTACATAAACGAACACATACTGGAGAAAAACCATTCTCTTGTGATGTTTGTGAGAAAAAGTTTAATAGAAAAGACAATTTAGTTGTGCATAAACGAACACATACTGGAGAAAAACCATTCTCTTGTAATATTTGTAAGAAAAAATTTAACCACTCTCAAAATTTAGTTCTACATAAACGAACACATACTGGAGAAAAACCATTTTCTTGTGATGTTTGTGAGAAAAAATATAGCCAATCTCAAAGTTTAGTTCTACATAAACGAACACATACTGGAGAAAAACCATTCTCTTGTAATGTTTGTAAGAAAAAATTTAATCACTCTCAAAATTTAGTTCTACATAAACGAACACATACTGAAGAAAAACCATTGTCCTGTGATATTTGTGAGAAAAAGTTTAATCGAAAAGATAATTTAGTTGTACATAAACGATTACATACTGGAGAAAAACCATTCTCTTGTGATGTTTGTAAGAGAAAATTTAATCACTCTCAAAATTTAGTTCTACATAAACGAACACATACTGAAGAAAAACCATTATCCGGTGATATTTGTGAGAAAAAGTTTAATCGAAAAGACAATTTAGTTGTACATAAACGATTACATACTGGAGAAAAACCATTCTCTTGTGATGTTTGTGAGAAAAAGTTTAATCGAAAAGATAATTTAGTTGTACATAAACGATTACATACTGGAGAAAAACCATTCTCTTGTGATGTTTGTGAGAAAAAGTTTAATAGAAAAGACAATTTAGTTGTACATAAACGAACACATACTGGAGAAAAACCATTCTCTTGTAATGTTTGTAAGAAAAAATTTAACCACTCTCAAAGTTTAGTTCTACATAAACGAACACATACTGAAGAAAAACCATTGTCCGGTGATATTTGTGAGAAAAAGTTCAATCGAAAAGACAGTTTAGTTGTACATAAACGATTACATACTGGAGAAAAACCATTCTCTTGTGATTTTTGTGAGAAAAAATTTACTGCCAAACAAAATTTAGTTAAACATAATCGAACAATGCATACTACAGAAAAACCATCCCCGTGTGATCCTAATAAAACATCTATTTTGTACATTTAA
- Protein Sequence
- MKNEELCLELRIKEEINDEILYEVDFKNDEICDYIISDNKIILENKRIKIERKLHSELIIKDESYDEMFEETETDSNCRELVKENYSCDVCDKIFTTKIKLSKHKKKHKEKLYSCEVCDKKFTFPSVLVQHKRIHTGEKPLFCDICEKKFNRKDSLVVHKRTHTGEKPFSCDVCEKKYSQSQSLVLHKRTHTGEKPLSCDICEKKFNRKDNLVVHKRLHTGEKPFSCDVCKKKFNRKDNLVVHKRTHTGEKPFSCNICKKKFNHSQNLVLHKRTHTEEKPLSGDICEKKFNRKDNLVVHKRLHTGDKPFSCDVCEKKYSHSQSLVLHKRTHTGEKPFSCDVCEKKYSHSQSLVLHKRTHTGEKPFSCDVCEKKFNRKDNLVVHKRTHTGEKPFSCNICKKKFNHSQNLVLHKRTHTGEKPFSCDVCEKKYSQSQSLVLHKRTHTGEKPFSCNVCKKKFNHSQNLVLHKRTHTEEKPLSCDICEKKFNRKDNLVVHKRLHTGEKPFSCDVCKRKFNHSQNLVLHKRTHTEEKPLSGDICEKKFNRKDNLVVHKRLHTGEKPFSCDVCEKKFNRKDNLVVHKRLHTGEKPFSCDVCEKKFNRKDNLVVHKRTHTGEKPFSCNVCKKKFNHSQSLVLHKRTHTEEKPLSGDICEKKFNRKDSLVVHKRLHTGEKPFSCDFCEKKFTAKQNLVKHNRTMHTTEKPSPCDPNKTSILYI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -