Basic Information

Insect: Chrysoperla carnea
Gene Symbol: -
Assembly: GCA_905475395.1
Location: FR997754.1:14548137-14550014[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 3.8e-05 0.00082 20.1 3.2 1 23 69 91 69 91 0.97

2 18 1e-06 2.2e-05 25.0 2.1 1 23 97 119 97 119 0.98

3 18 3.7e-06 8e-05 23.3 5.1 1 23 125 147 125 147 0.99

4 18 7.2e-08 1.6e-06 28.6 0.7 1 23 153 175 153 175 0.98

5 18 8.3e-05 0.0018 19.0 4.0 1 23 181 203 181 203 0.98

6 18 8.1e-07 1.8e-05 25.3 3.5 1 23 209 231 209 231 0.98

7 18 8.9e-07 1.9e-05 25.2 0.8 1 23 237 259 237 259 0.98

8 18 1.1e-05 0.00025 21.7 1.4 2 23 266 287 265 287 0.96

9 18 1.5e-05 0.00032 21.4 1.6 1 23 293 315 293 315 0.97

10 18 9.5e-05 0.002 18.8 6.6 1 23 321 343 321 343 0.98

11 18 0.54 12 7.0 0.0 5 17 406 418 405 419 0.91

12 18 8.1e-06 0.00017 22.2 2.3 1 23 430 452 430 452 0.98

13 18 2.2e-07 4.8e-06 27.1 1.4 1 23 458 480 458 480 0.99

14 18 1.4e-06 3e-05 24.6 0.6 1 23 486 508 486 508 0.98

15 18 6.4e-07 1.4e-05 25.7 0.3 2 23 515 536 514 536 0.97

16 18 0.00027 0.0058 17.4 2.5 1 23 542 564 542 564 0.98

17 18 2.3e-05 0.0005 20.8 2.3 1 23 570 592 570 592 0.98

18 18 1.1e-05 0.00024 21.7 5.5 1 23 598 620 598 620 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	3.8e-05	0.00082	20.1	3.2	1	23	69	91	69	91	0.97
2	18	1e-06	2.2e-05	25.0	2.1	1	23	97	119	97	119	0.98
3	18	3.7e-06	8e-05	23.3	5.1	1	23	125	147	125	147	0.99
4	18	7.2e-08	1.6e-06	28.6	0.7	1	23	153	175	153	175	0.98
5	18	8.3e-05	0.0018	19.0	4.0	1	23	181	203	181	203	0.98
6	18	8.1e-07	1.8e-05	25.3	3.5	1	23	209	231	209	231	0.98
7	18	8.9e-07	1.9e-05	25.2	0.8	1	23	237	259	237	259	0.98
8	18	1.1e-05	0.00025	21.7	1.4	2	23	266	287	265	287	0.96
9	18	1.5e-05	0.00032	21.4	1.6	1	23	293	315	293	315	0.97
10	18	9.5e-05	0.002	18.8	6.6	1	23	321	343	321	343	0.98
11	18	0.54	12	7.0	0.0	5	17	406	418	405	419	0.91
12	18	8.1e-06	0.00017	22.2	2.3	1	23	430	452	430	452	0.98
13	18	2.2e-07	4.8e-06	27.1	1.4	1	23	458	480	458	480	0.99
14	18	1.4e-06	3e-05	24.6	0.6	1	23	486	508	486	508	0.98
15	18	6.4e-07	1.4e-05	25.7	0.3	2	23	515	536	514	536	0.97
16	18	0.00027	0.0058	17.4	2.5	1	23	542	564	542	564	0.98
17	18	2.3e-05	0.0005	20.8	2.3	1	23	570	592	570	592	0.98
18	18	1.1e-05	0.00024	21.7	5.5	1	23	598	620	598	620	0.98

Sequence Information

Coding Sequence: ATGGAGCTTGTAAGAATTAAAGAAGAAATACAAGAGGAAATTTTTGAACATGTACTGTTTAAAGAAGAAATACAAGAAGAAACCATCGAAACTGTTACATTGGAATATGGAAGGGTAAGTGAAGAATTGATTGATAAAAAGGATAATGAAATAATTGGTGAAACTATCTTGGAAAATCGACGGATTAATAATAGAGAAGAACGTTTTTCTTGTGAAGCTTGTAATAAAACATTTACTCAGAAACATAATTTAATTAAACATAAACTAATTCATATTGGATTAAAACCATTTTCATGTGATGTTTGTGATAAGAAATTTAATTCGCAAAATAATTTAACTCGGCATAAACGAATTCACACCGGAGGAAACCCTTATTCGTGTAAACATTGTGACAAAACATTTTCCCAGATGCAACAATTAATTAAACATACAAGAACACATACTGGAGAAAAACCTTTTATATGCGAAATTTGTAATAAAACATTTACTTTTAACAGTAATTTAATTGTACATATACGAACTCATGCTGGAGAAAAGCCTTTTAAATGTGAAGTCTGTGATAGGAAGTTTACTTTTAAACACGATTTAATTCAACATAAACTTACTCATAATGGAGAAAAACCTTTTTCATGCGAAATTTGTAATAAAACATTTAATCACAAAGATAATTTAATTAAACATAAAAGAATCCATACTGGAAGTAAACCTTTTTCATGTGAATTTTGCGATAAAAAATTTAGTAATCCTAGCAATTTAGTAGTTCATAAACGAATTCATATTGGAGAAAAACCTCTATCATGTGATGTTTGTAATAAGACGTTTAATCAGCGACAGAGTTTAATTAGACATAAACGAATCCATACTGGAGAAAAACCTTTTTCTTGTGAAGTTTGTGATAAAAAATTTAATTCACAAAATACTTTAACAAGGCATAAACTAATTCACACCGGAGAAAAACCGTATTCATGTGAAATTTGTAATAAAAAATTTAGTCAAAAACATCATTTAAATGGACATAAACGAAATCATTTACGAGAAAAAGATTCGAATATGAAGTCTGAAACTGTTACGTTGAAACATGGAGGAATTAAAGAAGAAATACCAGAGGAAATTGTTAAAATTGAACATGTATTTATTAAAGAAGAAATATCCGACGAAAATTTTGAAAGGGGACCTGTACCAATCGATAACGAAGATAAACGTTTTTCTTATGAAGTTTGTGATAAAACGTACACTAATCAACGCAATTTAAATGTACCTAAAAGAACTTATAGTGAAGGAAAATCATTTTCATGTGATCTTTGTGATAAAACATTCACTCTAAAAAATAGTTTAATTAGACATAAACGAACTCATACCGGAGAGAAACCATTTACATGTGAAATTTGTGATAAGAGATTTATTCAGAAAAGTGATTTAACTATACATAAACGTACGCATTCTGGGGAAAAACCTTTTTCATGTGATATTTGCGACCAAAAATTTAATTCACAAGGTAATTTAACGCTGCATCAACGAATCCACACTGGAGAAAAACTTCTTTCATGTGAAATTTGTAATAAAATATTTACCCGACCAAGTAATTTAATTGCACATAAACAAACACATAATGGAGAAAAACTTTTTACATGTGAAGTCTGTGATAAGAAATTTATTTTTAAAAACCGTTTAACTCAGCATAAGCGAATACATACTGGTGAAAAACCTTTTTCATGTGAATTTTGTAATAAAATATTCACTTTTGGCAGTAATTTAATTAAACATAGACGAACGCATACTGGAGAAAAACCTTTTTCATGTGAAGTTTGTGATAAAAAATTTCGTTCATCCTGTAACTTAACTCGTCATAAGCGTAGTCATACTGGGGAAATTTTTTGA
Protein Sequence: MELVRIKEEIQEEIFEHVLFKEEIQEETIETVTLEYGRVSEELIDKKDNEIIGETILENRRINNREERFSCEACNKTFTQKHNLIKHKLIHIGLKPFSCDVCDKKFNSQNNLTRHKRIHTGGNPYSCKHCDKTFSQMQQLIKHTRTHTGEKPFICEICNKTFTFNSNLIVHIRTHAGEKPFKCEVCDRKFTFKHDLIQHKLTHNGEKPFSCEICNKTFNHKDNLIKHKRIHTGSKPFSCEFCDKKFSNPSNLVVHKRIHIGEKPLSCDVCNKTFNQRQSLIRHKRIHTGEKPFSCEVCDKKFNSQNTLTRHKLIHTGEKPYSCEICNKKFSQKHHLNGHKRNHLREKDSNMKSETVTLKHGGIKEEIPEEIVKIEHVFIKEEISDENFERGPVPIDNEDKRFSYEVCDKTYTNQRNLNVPKRTYSEGKSFSCDLCDKTFTLKNSLIRHKRTHTGEKPFTCEICDKRFIQKSDLTIHKRTHSGEKPFSCDICDQKFNSQGNLTLHQRIHTGEKLLSCEICNKIFTRPSNLIAHKQTHNGEKLFTCEVCDKKFIFKNRLTQHKRIHTGEKPFSCEFCNKIFTFGSNLIKHRRTHTGEKPFSCEVCDKKFRSSCNLTRHKRSHTGEIF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -