Ccar018900.1
Basic Information
- Insect
- Chrysoperla carnea
- Gene Symbol
- -
- Assembly
- GCA_905475395.1
- Location
- FR997754.1:134241929-134243971[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.0024 0.053 14.4 4.6 1 23 76 98 76 98 0.98 2 20 0.00013 0.0027 18.4 0.6 1 23 103 125 103 125 0.98 3 20 0.00013 0.0029 18.3 2.7 1 23 131 153 131 153 0.97 4 20 2e-05 0.00042 21.0 0.6 1 23 159 181 159 181 0.98 5 20 3.7e-06 8.1e-05 23.2 1.2 1 23 187 209 187 209 0.98 6 20 1.9e-05 0.00041 21.0 0.6 1 23 215 237 215 237 0.97 7 20 8.8e-06 0.00019 22.1 1.8 1 23 243 265 243 265 0.98 8 20 0.0047 0.1 13.5 1.3 1 23 271 293 271 293 0.95 9 20 2e-05 0.00044 20.9 1.2 1 23 299 321 299 321 0.96 10 20 5.4e-06 0.00012 22.7 1.3 1 23 327 349 327 349 0.97 11 20 4.2e-06 9e-05 23.1 0.4 1 23 355 377 355 377 0.97 12 20 0.00028 0.0061 17.3 0.5 1 23 383 405 383 405 0.97 13 20 2.5e-05 0.00054 20.6 2.0 1 23 411 433 411 433 0.98 14 20 4.3e-05 0.00093 19.9 1.6 1 23 439 461 439 461 0.97 15 20 1.2e-05 0.00027 21.6 2.4 1 23 467 489 467 490 0.95 16 20 0.021 0.46 11.4 0.2 6 23 505 522 503 522 0.98 17 20 7e-08 1.5e-06 28.7 2.1 1 23 528 550 528 550 0.98 18 20 4.6e-05 0.001 19.8 3.4 1 23 556 578 556 578 0.98 19 20 2.3e-06 4.9e-05 23.9 0.8 1 23 584 606 584 606 0.98 20 20 3.9e-06 8.4e-05 23.2 0.9 1 23 612 634 612 634 0.98
Sequence Information
- Coding Sequence
- ATGGCAACTGATTCATTTGCACAAATAGAAGACATTAAAGTTGAGCAGTTGGAAACTGGATTAGAAATTAAAAACGAAATAAGTGAAGAAAATGATTCAATGAATCATGAAGATATTCATGAATTTAATACAGTATTAATCAAAAATGAAAATATTAAGATTGAACAAGAATTACAGACCGAATTAATAATAAAACTTGAAGATAATGAAGCAAAAGAAAAACTTTTTACTTGTGATATATGTCACAAAGAATTTACAGAGCGTTGTAGTTTAGTTAATCATAAACGAGCTCATACTGAAAAACGTTTTACTTGTGATGTTTGTGACAAAAAATTTACTGAACGTTACGTTTTAGTTGCACATAAAAGAGTTCATACTGGGGAAAAACCATTTTCTTGTGATGTTTGTGACAAAAAATTTACTAAACTTTACCATTTAGTTAATCATAAATTAATTCATACTGGAGAAAAACCTTATGCATGTGATGTTTGTGATAAAAAATTTATTTACAATAATGATTTAATTAGTCATAAACGAACTCATACGGGAGAAAAACCATTTTCTTGTGATGTTTGTGACAAAAAATTTACTCATAGTAGCGGTTTAGCTATACATACACGAGTGCATACCGGAGAAAAACGTTTTGCTTGTGATGTTTGTGATAAAAGATTTACAGTTCGAAATAATTTAGTTAATCATAAACGAGTTCATAATGGGGAAAAACCGTTTTCTTGTGATGTTTGTAATAAAAATTTCACATCCAAAGAATATTTAATTAGACATAAATTAACTCATACCGGAGAAAAACGTTTTGACTGTGATTTTTGTGACAAGAAATTCACACGAAATGATATTTTAGTTAAACATAAACTATTACATACTGGAGAAAAACCATTTTCTTGTGATGTTTGTGAAAAAAAATTTACTCAAAGTAGCAGTTTAGCTAAACATAAACTACTTCATACCGGAGAAAAACGTTTTACTTGTGATGTTTGTGACAAAAAATTTTCTCAAAGTAGCACTTTAGCTAAACATAAACTACTTCATACCGGAGAAAAACGTTTTGCTTGTGATATTTGTGACAAAAGATTTACAGTTCGAGATAATTTAGTTAATCATAAACGAGTTCATTCTGGAGAAAAACCATTTTCTTGTGATGTTTGTGAAAAAAAATTTACTCAAGGTAGCAGTTTAGCTACACATAAACTAGTTCATACCGGAGAAAAGCGTTTTACTTGTGATATTTGTGAGAAAAAATTTACATTTCGAAATAATTTAGTAAATCATAAACGAGTTCATGCTGGAGAAAAACCTTTTTCTTGTGATGTTTGTGACAAAAAATTTACATTTAAAGATTATTTAGTTAAACATAAATTAGTTCATACTGGGGAAAAACCATACTCTTGTGATATTTGTGAGAAAAAATTTATTCAACGTAGCAATTTAGCCCGACATAAATTAAATCATCATAAACAAGCTTATTCGGAGAAAAAACATTTTTCTAATGATGCTTGTGACGAAAAATTTAACGAACTTAGCAATTTCACTAAACATAAACGAGTTCATACTGGGAAAAAATTTTATTCTTGTGATATTTGTGACAAAAAATTTACTCAAAGTAGCAATTTAAATAAACATAAAAGAATTCATGCTGGAGTAAAACTTTTTTCTTGTGATGTTTGTGACAAAGAATTTACTGAACGTTGCAATTTAACTAAACATAAAAGAGTTCATTCGGGAGAAAAACCTTTTTCTTGTAATGTTTGTGACAAAAAATTTACTGGAAGTGGTAATTTAATTAAACATAAAAGAGTTCATACTGGTGAAAAACCTTATTCTTGCGATGTTTGTGATAAAAAATTTACTGGAAGTGGTAATTTAAATAAACATAAAAAAATACATTCTGAAGATTTACAAACAGAAATTAAAATTGAAATGTTAGAAGAATGTGAATCAATGAATCTTGAAACAATCCAAGAATTTAATACCGTTTTTATTAAAAATGAAAATATTAAAATCGAACAAGAATTACAGAACGAATGA
- Protein Sequence
- MATDSFAQIEDIKVEQLETGLEIKNEISEENDSMNHEDIHEFNTVLIKNENIKIEQELQTELIIKLEDNEAKEKLFTCDICHKEFTERCSLVNHKRAHTEKRFTCDVCDKKFTERYVLVAHKRVHTGEKPFSCDVCDKKFTKLYHLVNHKLIHTGEKPYACDVCDKKFIYNNDLISHKRTHTGEKPFSCDVCDKKFTHSSGLAIHTRVHTGEKRFACDVCDKRFTVRNNLVNHKRVHNGEKPFSCDVCNKNFTSKEYLIRHKLTHTGEKRFDCDFCDKKFTRNDILVKHKLLHTGEKPFSCDVCEKKFTQSSSLAKHKLLHTGEKRFTCDVCDKKFSQSSTLAKHKLLHTGEKRFACDICDKRFTVRDNLVNHKRVHSGEKPFSCDVCEKKFTQGSSLATHKLVHTGEKRFTCDICEKKFTFRNNLVNHKRVHAGEKPFSCDVCDKKFTFKDYLVKHKLVHTGEKPYSCDICEKKFIQRSNLARHKLNHHKQAYSEKKHFSNDACDEKFNELSNFTKHKRVHTGKKFYSCDICDKKFTQSSNLNKHKRIHAGVKLFSCDVCDKEFTERCNLTKHKRVHSGEKPFSCNVCDKKFTGSGNLIKHKRVHTGEKPYSCDVCDKKFTGSGNLNKHKKIHSEDLQTEIKIEMLEECESMNLETIQEFNTVFIKNENIKIEQELQNE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -