Ccar010208.1
Basic Information
- Insect
- Chrysoperla carnea
- Gene Symbol
- -
- Assembly
- GCA_905475395.1
- Location
- FR997755.1:87313856-87316009[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 2.8e-05 0.0006 20.5 2.0 1 23 61 83 61 83 0.97 2 19 2e-05 0.00042 21.0 0.4 1 23 89 111 89 111 0.98 3 19 0.00017 0.0036 18.1 0.9 1 23 117 139 117 139 0.93 4 19 1.7e-05 0.00037 21.1 1.3 1 23 145 167 145 167 0.97 5 19 3e-07 6.6e-06 26.7 1.8 1 23 173 195 173 195 0.99 6 19 4.4e-06 9.5e-05 23.0 0.5 1 23 201 223 201 223 0.98 7 19 1.5e-06 3.2e-05 24.5 4.2 1 23 229 251 229 251 0.98 8 19 1.6e-05 0.00034 21.3 1.1 1 23 257 279 257 279 0.98 9 19 3.5e-05 0.00075 20.2 4.1 1 23 285 307 285 307 0.98 10 19 0.0002 0.0042 17.8 1.8 2 23 314 335 313 335 0.96 11 19 2.4e-05 0.00052 20.7 2.1 1 23 467 489 467 489 0.97 12 19 0.00037 0.008 17.0 1.0 1 23 495 517 495 517 0.95 13 19 0.00027 0.0058 17.4 2.9 1 21 523 543 523 545 0.95 14 19 3.7e-05 0.00079 20.1 3.8 1 23 551 573 551 573 0.98 15 19 1.5e-07 3.3e-06 27.6 0.5 1 23 581 603 581 603 0.98 16 19 8.7e-08 1.9e-06 28.4 0.8 1 23 609 631 609 631 0.98 17 19 7.1e-06 0.00015 22.4 1.0 1 23 637 659 637 659 0.98 18 19 6.6e-05 0.0014 19.3 2.9 1 23 665 687 665 687 0.98 19 19 5.4e-05 0.0012 19.6 1.5 2 23 694 715 693 715 0.96
Sequence Information
- Coding Sequence
- ATGCCATTCCATACGTCCGATAATTCGACGTTAATTAACACAGAAATAAATAAAATTGAAGTAAATACAGAAATGATAATTAAAAAGGAGGATATTAGCGAAATAATCAAAGAACCTTGTTTATCTAATGCTGATAAAACATTTATAAATAAAATCATAATTAAAACCGGAAAAAATAGTTTTGCTTGTGGTATTTGTAATAAATCATTTAGATTTAAAAGTGCTTTACATGTGCATAAACGAATTCATACAGGAGAAAAACCATATTCGTGTGATTTATGCGATCGAATATTTACCCAAAAAGGAAGTTTACTTATACATAAACGAGTTCATACTGGAGAAAAACCATTTGCCTGTGATGTATGTACGAAAACGTTTACTAATAAACGAAATTTAGTTGAACATAAAGTCAATCATACAGGAGAAAAACCATTTTCTTGTGACGTCTGTAATAAAAAATTTACCAACCAAAGAAATCTTATTGAACATAAAAGTATTCATAACGGAATACAACGTTTTAAGTGTGATATTTGTGATAAAAAATTTTCACGAAAAAGTGGATTAGTTAAACATAAACGAATTCATAGTGGAGAAAAACCATATTCATGTGATGTTTGTGGAAAACTTTTCAGTCAATCAAGCGGTTTAAATACACATAAACGAATTCATACCGGTGAAAAATTATATTCATGCAACGTTTGTGATAAAACATTTACGAATCATAGTAATTTTATTCGACATAAACGAATTCATAGTGGGGAAAAACGTTTTTCATGTGATGTCTGTGACAAAACATTTATACAAAAAACCAGTTTGTCTTTACATAAACGAATCCATACCGGAGAAAAACCATTTTCGTGTTATATTTGTAGTAAAACATTTACTCGACATGAAAATTTAACTGAACATAAACGAATTCATACTGGGGAAAAACCATTATCATGTGATATTTGTACTCAAAGATTTTCTTTTAAAAGTAGTTTGCGTAAGCATAAATTAATTCATAGTAAAGAAAAAAGTTTTTCTTGTGATGTGAATAACGCAGAAAATATGAAAAAGGAATCATTAAACACAGAAATTGATATTAAAGATGAGAAAAATATTGTGGATAGCGAAGAAATTATGAAAATCGAATCATTAAATACAGAAATTGACGAAGAAATTTATCCAAATGATTCAGATGATAAAACATTTTCCAATGAAATTAATTTTGAAATAAAATCTGGCGATAACAAAGAAGAGGAAACCATCGATAAAGTTTTTGTGTGCGATGAAAAATTGTCACAAGCCTACACATCAGATGAACGGATTCATAATGAAAAAAAATTATTTTCTTGTGATGAAACCTTACAAACTAATTTCTCACAACATAAACGAATTCTCGACAAGAGAAAATTGTTTTCTTGTGATATTTGTGAAAAAAAATTTACCCAACAAAGTCATTTCGATAACCACATAGAAATTCATGGCGGGGAAAGATCATTTTTATGTGAAATTTGTAGCAAAACATTTAATAAACTTCAAGGTTTAATTAAACATAAACGAATTCATAGTAGAGAAAAACCATTTTCATGTGATGACTGTGATAAAAAATTTTCCATCCAAGCAAATTTAATTCGACATAAACGCTGTCACACGGGTGAAAAACCTTTTTCGTGTAACCTTTGTAATAAAACGTTTGCCTATCAACATAATTTAGTTGTACATAAACGAAAACATAGTGGAATCATGGAAAAACCATTTTCATGTGATATTTGTGGTAAAATGTTTGCTACATCGAGTAGTTTACGTAAACATGAACGAATTCATACTGGAGAAAAATCATTTTCATGTGATATTTGTGGGAAAAATTTTAATGATAGTGGTAATTTAAAACGGCATAGAAGAATTCATAGCGGAGAAAAACCATTTTCATGTAATATCTGCAATGAGAAATTTACACAGAAAAGTAGTTTAGGTTTACATCAACGAATTCATACTGGGGAAAAACCGTTTTCTTGTTATGTTTGTAATAAAATGTTTACTCGCCATGAGAACTTAGTTGAACACAAACGAATTCATACGGGAGAAAAACCCTTGTCATGCAATGTTTGTAATCGAACATTTGCTTTTAAAAGCAGTTTACGTAAACATAAACTAATTCATACAAAATAG
- Protein Sequence
- MPFHTSDNSTLINTEINKIEVNTEMIIKKEDISEIIKEPCLSNADKTFINKIIIKTGKNSFACGICNKSFRFKSALHVHKRIHTGEKPYSCDLCDRIFTQKGSLLIHKRVHTGEKPFACDVCTKTFTNKRNLVEHKVNHTGEKPFSCDVCNKKFTNQRNLIEHKSIHNGIQRFKCDICDKKFSRKSGLVKHKRIHSGEKPYSCDVCGKLFSQSSGLNTHKRIHTGEKLYSCNVCDKTFTNHSNFIRHKRIHSGEKRFSCDVCDKTFIQKTSLSLHKRIHTGEKPFSCYICSKTFTRHENLTEHKRIHTGEKPLSCDICTQRFSFKSSLRKHKLIHSKEKSFSCDVNNAENMKKESLNTEIDIKDEKNIVDSEEIMKIESLNTEIDEEIYPNDSDDKTFSNEINFEIKSGDNKEEETIDKVFVCDEKLSQAYTSDERIHNEKKLFSCDETLQTNFSQHKRILDKRKLFSCDICEKKFTQQSHFDNHIEIHGGERSFLCEICSKTFNKLQGLIKHKRIHSREKPFSCDDCDKKFSIQANLIRHKRCHTGEKPFSCNLCNKTFAYQHNLVVHKRKHSGIMEKPFSCDICGKMFATSSSLRKHERIHTGEKSFSCDICGKNFNDSGNLKRHRRIHSGEKPFSCNICNEKFTQKSSLGLHQRIHTGEKPFSCYVCNKMFTRHENLVEHKRIHTGEKPLSCNVCNRTFAFKSSLRKHKLIHTK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -