Basic Information

Insect: Chrysoperla carnea
Gene Symbol: -
Assembly: GCA_905475395.1
Location: FR997757.1:10905775-10909099[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 7.4e-07 1.6e-05 25.5 2.0 1 23 118 140 118 140 0.99

2 18 7.9e-05 0.0017 19.1 4.1 1 23 146 168 146 168 0.98

3 18 1.9e-06 4.1e-05 24.2 3.2 1 23 174 196 174 196 0.98

4 18 4.4e-05 0.00095 19.9 1.6 1 23 202 224 202 224 0.97

5 18 5.7e-05 0.0012 19.5 0.1 1 23 230 252 230 252 0.98

6 18 2.2e-06 4.7e-05 24.0 2.5 1 23 258 280 258 280 0.98

7 18 1.3e-06 2.8e-05 24.7 1.4 1 23 409 431 409 431 0.97

8 18 1.9e-07 4e-06 27.3 2.5 1 23 437 459 437 459 0.98

9 18 8.5e-05 0.0018 19.0 1.6 1 20 465 484 465 487 0.94

10 18 0.00037 0.008 17.0 5.4 1 23 493 515 493 515 0.98

11 18 1.2e-06 2.5e-05 24.8 1.3 1 23 668 690 668 690 0.97

12 18 3.5e-07 7.6e-06 26.5 2.2 1 23 696 718 696 718 0.98

13 18 0.00022 0.0048 17.7 5.2 1 23 724 746 724 746 0.98

14 18 1.9e-06 4.1e-05 24.2 0.3 1 23 752 774 752 774 0.99

15 18 2e-05 0.00044 20.9 0.4 1 23 780 802 780 802 0.98

16 18 2.9e-05 0.00063 20.4 1.3 1 23 808 830 808 830 0.98

17 18 1.5e-06 3.1e-05 24.5 2.4 1 23 836 858 836 858 0.98

18 18 0.00051 0.011 16.5 7.4 1 23 864 886 864 886 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	7.4e-07	1.6e-05	25.5	2.0	1	23	118	140	118	140	0.99
2	18	7.9e-05	0.0017	19.1	4.1	1	23	146	168	146	168	0.98
3	18	1.9e-06	4.1e-05	24.2	3.2	1	23	174	196	174	196	0.98
4	18	4.4e-05	0.00095	19.9	1.6	1	23	202	224	202	224	0.97
5	18	5.7e-05	0.0012	19.5	0.1	1	23	230	252	230	252	0.98
6	18	2.2e-06	4.7e-05	24.0	2.5	1	23	258	280	258	280	0.98
7	18	1.3e-06	2.8e-05	24.7	1.4	1	23	409	431	409	431	0.97
8	18	1.9e-07	4e-06	27.3	2.5	1	23	437	459	437	459	0.98
9	18	8.5e-05	0.0018	19.0	1.6	1	20	465	484	465	487	0.94
10	18	0.00037	0.008	17.0	5.4	1	23	493	515	493	515	0.98
11	18	1.2e-06	2.5e-05	24.8	1.3	1	23	668	690	668	690	0.97
12	18	3.5e-07	7.6e-06	26.5	2.2	1	23	696	718	696	718	0.98
13	18	0.00022	0.0048	17.7	5.2	1	23	724	746	724	746	0.98
14	18	1.9e-06	4.1e-05	24.2	0.3	1	23	752	774	752	774	0.99
15	18	2e-05	0.00044	20.9	0.4	1	23	780	802	780	802	0.98
16	18	2.9e-05	0.00063	20.4	1.3	1	23	808	830	808	830	0.98
17	18	1.5e-06	3.1e-05	24.5	2.4	1	23	836	858	836	858	0.98
18	18	0.00051	0.011	16.5	7.4	1	23	864	886	864	886	0.97

Sequence Information

Coding Sequence: ATGTCAACGAATTCATTGCATGATGTGAATATTCCCATTTTCATCGGTGCAGAAAACATTAAACATGAAAAAGAGGACATATTAGAAGAGACTATGACAATCGAAGATGGGCGAAATCAAAACAAATTTATGTACGAAAATGTAATAATGGACCATGAACAAATTAAAATTGAAGGAGTAAACGAAAATGATGCATTAGAGGAAATTCATCTAGAACAACCCTTCTTTCCGAATACATTAAATACAGAAATCATAATTAAAGAAGAAATGTTAGATGGAAATGCTACAGGTCAAAAAGAAATAAATACTGAAACGCAAGAACAAAAACGCATTCATATGGAAGGAAAACCTTATTCCTGTGATATTTGTGAAAAAATATTTATTCAAAAGAGTCATTTAAATGAACATCAACGAACTCATACTGAGAAAAAACGTTTTTCATGTGACGTATGTAATAAAACATTTAGTCACGCCAACAGTTTAGTTCATCATAAACGAATTCATACAGGTGAGAGACCTTATTCATGTGATTTTTGTGGTAAAACATTCACCCAGCACTCAAGTTTAAACGTCCATAGACGAATTCACACTGGAATCAAACCATTTGCATGCGATGTTTGTAGTAAATCATTCAGAGATACAAGCCGTTTAACTAGACACAAACGTATTCATACTGGAGAAAAACCCTTTCCTTGTGATTTTTGTGATAAAGCTTTTAATGATCCAGGTACATTAGTCATTCATAAACGAATTCATACTGGAGAAAAACCGTTTCCATGTGATGTTTGTGGTAAAGCTTTTAATCAGAAGAGCCATTTAAGCTATCATAAACGAACACATTCTGCAATTAATTCAGTTCATGATGTTAATATTCCTTTAACAAATATTAAGCAAGAAAACGAACAAATATTAGAAGATAGTGAGACGCTTGTGACATCGGAAAATGAATTATTAAACGAAAATGATTCAACGGAACATGTTCAAATTAAAAATGAAATAATAGATGAAAGTTTTATGTTGGAATATGAACAAATTAATGTAAAAGAACCATCATTTAGGAATATAGGAAGCATTGTTAAAGATGAAATAGTAAAGGAAAATATTTCTGAACAAAAAGAAATTTATCATAATGAAGAAAAAATTTTTTCATCCGATTATGATAATACATTTAACGATCCCGATTATTTAATTAAACATGAACGTATTCAACAAGAAAACAAGCCTTTTGCTTGTGAAATTTGTACCAAATCATTTACTCATGAAAGTTATTTAATTAAACATATACGAATTCACACGGGGGAAAGGCCATTTTCATGTGATATTTGTGATAAAACATTTAATCAACGAAGTAATTTAAATCAGCATAAACGTACTCACACTGGGGAAAAGCCTTTTACTTGTGATGTTTGTGATAAAGCTTTTAATAAACAAAGTCATTTAAACCAACATAAACCAATACATACTGGAGAAAGGCCATTTGTTTGTGACCTTTGTAGTAAAAGGTTTGTCCATCGTCCTCATTTAACCAGGCATAAACAAACTCATATTAAAAAGGCTCTCCGTTTGGCCCCAAATAGCCAAACAAAATATAAAGAAGTTCATGCCACAGTTAATTCAGTTCACGAGATCAATATTCCTTTGTTCATCAGTGTAACAAATATTAAGCAGGAAAAAGATCAAATATTAGAGGATAATGAGACGCATGTGACATCGGAAAATGAATTGTTAAACGAAAATAATTCAACGGAACATGTTCAAATTAAAAATGAAATAATAGATAAAAGTTTTATGTTGGAACATGAAGAACAAATTGATGGAAAAAATCCACCCTTTACGAAAACAGAAATCATAGTTAAAGATGAAATAATAGAAGAAAATATTTCAGAGCAAAAAAGAGTTTATCATTTTGAAGATAAAATTTATTCATCCGATGATGATAATGCATTTAACGATCCCGGTTGTTTAATTAAACATGAACGTATACAGTCAGAAGAAAAACCTTTTGCTTGTGAAATTTGTACTAAATCATTTAGCCATGAAAGTTATTTAATTAAACATATACGAATTCACACGGGAGAAAAGCCATTTTCATGTGATATTTGTGAAAAAACATTTAATCAACAAAGTAATTTAAATCAGCATAAACGAACTCATACTGAACGCAAACCTTTCTCGTGTGATGTGTGTAATAAAACATTTAATCACTCCAACAGTTTGGTTCATCATAAACGAATTCATACAGGTGAGAGACCTTACACATGTGATATTTGCAGTAAAGCATTTACTCAGCAAGGTAGTTTAATCATCCATAGGCGAATTCACACCGGGGAGAAACCATTTTCTTGTGATGTCTGTGGTAAATTATTTAAAGAACAAAGCAGTCTAAGCAGACACGCACGAATTCATACTGGAGAAAAACCCTTTTCATGTGATGTTTGTGATAAAGCCTTTAATGACCATAGCACATTAGTCAGCCACAAACGAATTCACACTGGGGAAAAGCCTTTTTCTTGTGATGTTTGTGATAAAGCTTTTAATCAACAAAGTCATTTAAACCAACATAAACGAATACATACTGGAGAAAGGCCATTTGCTTGTGACCTTTGTAGTAAAAGGTTTACCCATCGTACTCATTTAACCAGGCATAAACAAACTCATATTAAAAAGGCTCTCCGTTTGGACCTAAATAGCCCAACAAATCGTAAAGGAGTTCATGCCACAGTTAATTCAATTCGCTATATTAAGCACGAAAAAGAAGAAATATTAGAAGATAGTGGGACGATTGTGACAACGGAAAATGAATTGGTAGACAAAAATGTTTCAATAGAACATGATTAA
Protein Sequence: MSTNSLHDVNIPIFIGAENIKHEKEDILEETMTIEDGRNQNKFMYENVIMDHEQIKIEGVNENDALEEIHLEQPFFPNTLNTEIIIKEEMLDGNATGQKEINTETQEQKRIHMEGKPYSCDICEKIFIQKSHLNEHQRTHTEKKRFSCDVCNKTFSHANSLVHHKRIHTGERPYSCDFCGKTFTQHSSLNVHRRIHTGIKPFACDVCSKSFRDTSRLTRHKRIHTGEKPFPCDFCDKAFNDPGTLVIHKRIHTGEKPFPCDVCGKAFNQKSHLSYHKRTHSAINSVHDVNIPLTNIKQENEQILEDSETLVTSENELLNENDSTEHVQIKNEIIDESFMLEYEQINVKEPSFRNIGSIVKDEIVKENISEQKEIYHNEEKIFSSDYDNTFNDPDYLIKHERIQQENKPFACEICTKSFTHESYLIKHIRIHTGERPFSCDICDKTFNQRSNLNQHKRTHTGEKPFTCDVCDKAFNKQSHLNQHKPIHTGERPFVCDLCSKRFVHRPHLTRHKQTHIKKALRLAPNSQTKYKEVHATVNSVHEINIPLFISVTNIKQEKDQILEDNETHVTSENELLNENNSTEHVQIKNEIIDKSFMLEHEEQIDGKNPPFTKTEIIVKDEIIEENISEQKRVYHFEDKIYSSDDDNAFNDPGCLIKHERIQSEEKPFACEICTKSFSHESYLIKHIRIHTGEKPFSCDICEKTFNQQSNLNQHKRTHTERKPFSCDVCNKTFNHSNSLVHHKRIHTGERPYTCDICSKAFTQQGSLIIHRRIHTGEKPFSCDVCGKLFKEQSSLSRHARIHTGEKPFSCDVCDKAFNDHSTLVSHKRIHTGEKPFSCDVCDKAFNQQSHLNQHKRIHTGERPFACDLCSKRFTHRTHLTRHKQTHIKKALRLDLNSPTNRKGVHATVNSIRYIKHEKEEILEDSGTIVTTENELVDKNVSIEHD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -