Ccar016021.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Chrysoperla carnea
Gene Symbol
-
Assembly
GCA_905475395.1
Location
FR997758.1:35845309-35848028[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 21 4.8e-05 0.001 19.7 2.2 1 23 163 185 163 185 0.98
2 21 2.4e-06 5.1e-05 23.9 2.1 1 23 202 224 202 224 0.98
3 21 1.5e-06 3.2e-05 24.5 1.5 2 23 229 250 228 250 0.97
4 21 0.00014 0.0031 18.3 0.2 2 23 257 278 256 278 0.97
5 21 4e-06 8.6e-05 23.2 1.0 1 23 285 307 285 307 0.98
6 21 3.3e-07 7.1e-06 26.6 0.5 1 23 313 335 313 335 0.98
7 21 2.2e-05 0.00047 20.8 1.9 1 23 341 363 341 363 0.98
8 21 3.5e-06 7.5e-05 23.3 4.9 1 23 369 391 369 391 0.98
9 21 8.9e-07 1.9e-05 25.2 1.5 1 23 397 419 397 419 0.98
10 21 0.17 3.7 8.6 3.1 1 23 425 447 425 447 0.95
11 21 4.5e-07 9.8e-06 26.1 0.5 1 23 453 475 453 475 0.98
12 21 0.0064 0.14 13.1 0.6 1 23 495 517 495 517 0.89
13 21 8.7e-06 0.00019 22.1 4.3 1 23 523 545 523 545 0.98
14 21 8.7e-05 0.0019 18.9 0.8 1 23 551 573 551 573 0.97
15 21 0.011 0.25 12.3 0.6 1 23 579 601 579 601 0.96
16 21 6.6e-05 0.0014 19.3 0.6 1 23 606 628 606 628 0.99
17 21 0.016 0.34 11.8 2.2 1 23 657 679 657 679 0.97
18 21 0.00034 0.0074 17.1 3.6 1 23 685 707 685 707 0.97
19 21 4.1e-05 0.00089 20.0 1.3 1 23 713 735 713 735 0.97
20 21 4.9e-06 0.00011 22.9 0.7 2 23 756 777 755 777 0.97
21 21 5.3e-05 0.0011 19.6 1.4 1 22 783 804 783 804 0.94

Sequence Information

Coding Sequence
ATGTCTTTTTGTAATCTAAATGATCACGTATTAATTAAAGATGAAAATATTGAAGTTGAACAATTACATGCAGAAATAATAATTAAGAACGAACTCGATGAAGAAGAAAAATATTCAAGTGATGTTGAGGATAAAATATTTACTAGCCAAAGTTACACATTACCCACGAGTTCCGTTAATTATAAACAAGAAATTGAAGAAGTACTATTAGAAGAAAAACTTGATGAATTATTAGAAGAAAAATATTCAAGTGATGTTGAGGATAAAATATTTACTAACCAAAGTTATGCATTACCCACTAGTTCTGTAAATCATAAACAAGAAATTGAAGAAGTAATATTACCTAGTGATGTAACAAAACAAAAAGGAGAACTTGAAGAAATAGTAGAGAAATATTCATGTGATGTTGGGGAGAAAATATTCGCTCAAAGTTTTCCATTAATCGTCGATTCCAAAAATGAAAAACCAATACTTTCTAGAAGTAAATTTTCATGTGACATTTGTGATAAAAAATTTAACCGACGTAAAGATTTATTAGGACATAAACGAAAACATTCTACCCATCGTTCGACTTTATTTCAACATAAACCAGGAAACAGGAGATTTTCATGCAATGTTTGTAATAAGACATTTACACTTAAAAGCACATTAATTAGACATAGAAGAATACATACCGGAGAATTATCGTGTGATGAATGCGATAAAAAATTTACTACAAATTCAAATTTAATTGAACATAAACGCAAACATGACGTCATAAAATCGTCTCCATGTGACGTATGTGGTGAGATATTTTCTCTTAAAGATTCTTTAATTAAACATAAACAAACGCATTTCGAAGGAGGAAAAATGTTTGTGTGTGACGTGTGTGATAAATCATTTAAATCTAAAGGTTATTTACTTAAACATAAACAAATACATACCGGGAGAAAACCTTTTCCATGTGATGTTTGTGGTAAATCATTTACTCGACGAAACTATTTAGAAGATCATCAACGAATACATACCGGGGAAGAACTTTTTTCATGTGATTTTTGTGATAAGACATTTGTTTATCGAAGTAGTTTAACTGTACATAAACTTACGCATACTGGAGTTAAATTTTTTACATGTAATATTTGTAACAAAAAATTTGCTCATAAAAGTAATTTTATTAGACATAAACGAATTCATACGATGGAAAAATCGTTTTCATGTGATGTTTGTGGTAAATCGTTTACTCAACGCAGCTATTTAGTTCAGCATCAAAAGCAACATGATGCAATAAAGAAATTTTTATGTGATATTTGCTGTAAAACATTCACTCGTTATACAGTTTTAGTCCAACATAAAAGAATTCATACCGGAGAAAAACCATTTACATGTGAAGTTTGCGGTAAAGCTTTTAGTCTTACAAGTAATTTAAATAAACATTTGCGAATTCATACAAGAAACACTAAAACTTTTGATAGTAAAACCATTACCAGCGATAGGGAAAAAATTTTCCCGTGTATTGTTTGTAATAAAAGATTTACTAACAAAGCCTATTTATCAAAACATAGTGTTATTCATACAGGAGAAAAACCATTTTCATGTGAAGTATGTGGTAAAAAATTTACTCATAAAAGCAGTTTTGTTAAACATAAACGAATTCATACGACGGGAGAATCGTTTTCATGCGATATTTGTGGTAAATTATTTACTCAACGCACTTATTTAGTTGTGCATCGAAAAGAGCATGCTGATCTAAAGGAATTTGTTTGTGATATTTGCTATAAAACGTTTACTCAATATACAATTTTAATCGAACATAAACAAATTCATGAAGAAAAACCATTTACGTGTGAAGTATGCAATAGAGCATTTGGTCTTGAGAGTTATTTAAAAAGTCATTTACGAACTCATACAAGAGACACTAAAACTTTAACCGGTGATAGCAATTTCAGTACAATTAGCCAACAAAAACATTCGGAGGAAGGTGAAAAACCATTTTCATGTGATATTTGTAACAAACGGTTTTTATTAAATAAATATTTAATAAAACATAAACGTTTACATACTGAAGAAATATCATTTGCATGCGATTTTTGTGAAAAACGATGTAATAACAAATATAATTTAATTCAACATAGACGAGTTCATACAGGGGAAAAACCGTTTGCGTGTGATCTTTGTGACAAAAAATTTTCACAATTAAGTGGTTTAAAACAGCATAAAACTACACACAACAAACCACAGAAAGATATTAATGTACGTAAAAGTATGCATACTAAAGAATTACGTATTAAATGTGAGTATTGTGATAAAAGATTTCCACGAAATTTTGATTTAATTCAACATACACGGGTGCATACAGGAGAAAAACCATTTTCATGTGAAGTTTGTGATAAAAAGTTTTCACAGCCAGCTGGTTTAAAACGACATAAATGTACTCAAAATTGA
Protein Sequence
MSFCNLNDHVLIKDENIEVEQLHAEIIIKNELDEEEKYSSDVEDKIFTSQSYTLPTSSVNYKQEIEEVLLEEKLDELLEEKYSSDVEDKIFTNQSYALPTSSVNHKQEIEEVILPSDVTKQKGELEEIVEKYSCDVGEKIFAQSFPLIVDSKNEKPILSRSKFSCDICDKKFNRRKDLLGHKRKHSTHRSTLFQHKPGNRRFSCNVCNKTFTLKSTLIRHRRIHTGELSCDECDKKFTTNSNLIEHKRKHDVIKSSPCDVCGEIFSLKDSLIKHKQTHFEGGKMFVCDVCDKSFKSKGYLLKHKQIHTGRKPFPCDVCGKSFTRRNYLEDHQRIHTGEELFSCDFCDKTFVYRSSLTVHKLTHTGVKFFTCNICNKKFAHKSNFIRHKRIHTMEKSFSCDVCGKSFTQRSYLVQHQKQHDAIKKFLCDICCKTFTRYTVLVQHKRIHTGEKPFTCEVCGKAFSLTSNLNKHLRIHTRNTKTFDSKTITSDREKIFPCIVCNKRFTNKAYLSKHSVIHTGEKPFSCEVCGKKFTHKSSFVKHKRIHTTGESFSCDICGKLFTQRTYLVVHRKEHADLKEFVCDICYKTFTQYTILIEHKQIHEEKPFTCEVCNRAFGLESYLKSHLRTHTRDTKTLTGDSNFSTISQQKHSEEGEKPFSCDICNKRFLLNKYLIKHKRLHTEEISFACDFCEKRCNNKYNLIQHRRVHTGEKPFACDLCDKKFSQLSGLKQHKTTHNKPQKDINVRKSMHTKELRIKCEYCDKRFPRNFDLIQHTRVHTGEKPFSCEVCDKKFSQPAGLKRHKCTQN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-