Ccar017677.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Chrysoperla carnea
Gene Symbol
-
Assembly
GCA_905475395.1
Location
FR997758.1:67755715-67758779[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 30 3.6e-05 0.00078 20.1 2.0 1 23 101 123 101 123 0.98
2 30 0.00072 0.016 16.0 2.0 1 23 129 151 129 151 0.98
3 30 0.00072 0.016 16.0 2.0 1 23 157 179 157 179 0.98
4 30 0.00053 0.011 16.5 3.3 1 23 185 207 185 207 0.98
5 30 0.00072 0.016 16.0 2.0 1 23 213 235 213 235 0.98
6 30 0.00059 0.013 16.3 2.1 1 23 241 263 241 263 0.98
7 30 0.00053 0.011 16.5 3.3 1 23 269 291 269 291 0.98
8 30 0.00072 0.016 16.0 2.0 1 23 297 319 297 319 0.98
9 30 0.00072 0.016 16.0 2.0 1 23 325 347 325 347 0.98
10 30 1.8e-05 0.00038 21.1 3.0 1 23 353 375 353 375 0.98
11 30 0.011 0.25 12.3 3.9 1 23 381 403 381 403 0.98
12 30 0.00052 0.011 16.5 0.7 1 23 409 431 409 431 0.98
13 30 0.00022 0.0047 17.7 2.7 1 23 437 459 437 459 0.98
14 30 0.00015 0.0032 18.2 2.8 1 23 465 487 465 487 0.98
15 30 0.00053 0.011 16.5 3.3 1 23 493 515 493 515 0.98
16 30 0.00059 0.013 16.3 2.1 1 23 521 543 521 543 0.98
17 30 0.00053 0.011 16.5 3.3 1 23 549 571 549 571 0.98
18 30 0.00072 0.016 16.0 2.0 1 23 577 599 577 599 0.98
19 30 1.8e-05 0.00038 21.1 3.0 1 23 605 627 605 627 0.98
20 30 0.011 0.25 12.3 3.9 1 23 633 655 633 655 0.98
21 30 0.0011 0.024 15.5 0.9 1 23 661 683 661 683 0.98
22 30 0.001 0.022 15.6 2.3 1 23 689 711 689 711 0.98
23 30 0.00022 0.0047 17.7 2.7 1 23 717 739 717 739 0.98
24 30 0.00015 0.0032 18.2 2.8 1 23 745 767 745 767 0.98
25 30 0.00059 0.013 16.3 2.2 1 23 773 795 773 795 0.98
26 30 0.00025 0.0054 17.5 1.1 1 23 801 823 801 823 0.98
27 30 0.0012 0.027 15.3 2.2 1 23 829 851 829 851 0.98
28 30 0.00053 0.011 16.5 3.3 1 23 857 879 857 879 0.98
29 30 0.0047 0.1 13.5 5.6 1 23 885 908 885 908 0.96
30 30 0.057 1.2 10.1 0.2 1 20 944 963 944 965 0.94

Sequence Information

Coding Sequence
ATGGACGGTGAAAATGTGAAAAATGAAGAATTCTGTTTAAAATTAGAAATCAAAGAAGAGGTTAATGACGAAATATTATATGAAGTGGATTCGAAAAATAATGAAATATGTGACTATATTAGTGATAATAAGTTACATTCAGAATTAATTTTAAAAGATGAAAGCTATGATGAAATATTTGAAGAAGCTGAAACTGATTTAAATTATCATGAATTGTTAAAGGAAAATTATTTTTGTGATAAAATATTTACAGCTGAAATTGAATTACGTAACAATGAAAAATTGCTCAAGCATAAATTGTATTCATGTGATGTGTGTGATGAAAAGTTTAAGCAACAACATTATTTAATTGTTCATAAACGAATTCATACTGGAGAAAAACCATTCTCTTGTGATGTTTGTGAAAAAAAATTTAACGGAAAACAACATTTAGTTGCACATAAACGATTACATACTAGAGAAAAACCATTCTCTTGTGATGTTTGTGAAAAAAAATTTAACGGAAAACAACATTTAGTTGCACATAAACGATTACATACTGGAAAAAAACCATTCTCTTGTGATGTTTGTGAAAAAAAATTTAACGTAAAACAACATTTAGTTCGACATAAACGATTACATACTAGAGAAAAACCATTTTCTTGTGACGTTTGTGAAAAAAAATTTAACGGAAAACAACATTTAGTTGCACATAAACGATTACATACTAGAGAAAAACCATTTTCTTGTGACGTTTGTGAAAAAAAATTTAACGTAAAACAACATTTAGTTGCACATAAACGATTACATACTGGAAAAAAACCATTCTCTTGTGATGTTTGTGAAAAAAAATTTAACGTAAAACAACATTTAGTTCGACATAAACGATTACATACTAGAGAAAAACCATTTTCTTGTGACGTTTGTGAAAAAAAATTTAACGGAAAACAACATTTAGTTGCACATAAACGATTACATACTAGAGAAAAACCATTTTCTTGTGACGTTTGTGAAAAAAAATTTAACGGAAAACAACATTTAGTTGCACATAAACGATTACATACTGGAGAAAAACCATTCTCTTGTGACGTTTGTGATAAAAAATTTGTTCACTCACAACTTTTAATTCGACATAAACGAACACATACTGGGGCAAAACCATTTTCATGTTATATTTGTGAAAAAAAATTTAAACACCAATGCGTTTTAGTAGCACATGAACGAATTCATACTGGAGAAAAACCATTCTCTTGTGATGTTTGTGAGAAAAAATTTAACATAAAACAGAATTTAGTTGTACATAAACGAATTCATACTGGAGAAAAACCATTCTCTTGTGATGTTTGTGAAAAAAAATTTAACGTAAAAGAACATTTAGTTCGACATAAACGATTACATACTGGAGAAAAACCATTCTCTTGTGATGTTTGTGAAAAAAAATTTAACCAAAAACAACATTTAGTTGCACATAAACGATTACATACTGGAGAAAAACCATTCTCTTGTGATGTTTGTGAAAAAAAATTTAACGTAAAACAACATTTAGTTCGACATAAACGATTACATACTGGAGAAAAACCATTTTCTTGTGACGTTTGTGAAAAAAAATTTAACGTTAAACAACATTTAGTTGCACATAAACGATTACATACTGGAAAAAAACCATTCTCTTGTGATGTTTGTGAAAAAAAATTTAACGTAAAACAACATTTAGTTCGACATAAACGATTACATACTAGAGAAAAACCATTTTCTTGTGACGTTTGTGAAAAAAAATTTAACGGAAAACAACATTTAGTTGCACATAAACGATTACATACTGGAGAAAAACCATTCTCTTGTGACGTTTGTGATAAAAAATTTGTTCACTCACAACTTTTAATTCGACATAAACGAACACATACTGGGGCAAAACCATTTTCATGTTATATTTGTGAAAAAAAATTTAAACACCAATGCGTTTTAGTAGCACATGAACGAATTCATACTGGAGAAAAGCCATTCTCTTGTGATGTTTGTGAGAAAAAATTTAACATAAAACAGAATTTAGTTGTACATAAACGATTACATACTGGAGAAAAACCATTCTCTTGTGATGTTTGTGAAAAAAAATTTAACGTAAAACAACATTTAGTTGTACATAAACGATTACATACTGGAGAAAAACCATTCTCTTGTGATGTTTGTGAAAAAAAATTTAACGTAAAAGAACATTTAGTTCGACATAAACGATTACATACTGGAGAAAAACCATTCTCTTGTGATGTTTGTGAAAAAAAATTTAACCAAAAACAACATTTAGTTGCACATAAACGATTACATACTGGAGAAAAACCATTCTCTTGTGATGTTTGTGAAAAAAAATTTAACGTAAAACAAAATTTTGTTCGACATAAACGATTACATACTGGAGAAAAACCATTCTCTTGTAATGTTTGTGAAAAAAAATTTAACGTAAAACAAAATTTAGTTGTACATAAACGATTACATACTGGAGAAAAACCATTCTCTTGTGATGTTTGTGAAAAAAAATTTAACGGAAAACAACATTTAGTTGTACATAAACGATTACATACTGGAGAAAAACCATTCTCTTGTGATGTTTGTGAAAAAAAATTTAACGTAAAACAACATTTAGTTCGACATAAACGATTACATACTGGGAAAGAATCATTCTCATGTGACGAATGTGAAAGAAAATTTAACTCAGAACACCATTTAATTAAACATAAACTAAAAAAACATACTACAGAAAAACCAGCAGCGTGTGATGGTCATAATAAAACATTTAAGTTTAAGAAGAGTTTAGTAAAACAAAGACTTGTACATTTAAGACCACCAACACCTCCATACGTATGTGAAGATTGTGACCTAATTATTACCAATCAAAATGAATTAAAAGATCATAAACATAAAAATATTGTTATTTTAATAAACAAATAA
Protein Sequence
MDGENVKNEEFCLKLEIKEEVNDEILYEVDSKNNEICDYISDNKLHSELILKDESYDEIFEEAETDLNYHELLKENYFCDKIFTAEIELRNNEKLLKHKLYSCDVCDEKFKQQHYLIVHKRIHTGEKPFSCDVCEKKFNGKQHLVAHKRLHTREKPFSCDVCEKKFNGKQHLVAHKRLHTGKKPFSCDVCEKKFNVKQHLVRHKRLHTREKPFSCDVCEKKFNGKQHLVAHKRLHTREKPFSCDVCEKKFNVKQHLVAHKRLHTGKKPFSCDVCEKKFNVKQHLVRHKRLHTREKPFSCDVCEKKFNGKQHLVAHKRLHTREKPFSCDVCEKKFNGKQHLVAHKRLHTGEKPFSCDVCDKKFVHSQLLIRHKRTHTGAKPFSCYICEKKFKHQCVLVAHERIHTGEKPFSCDVCEKKFNIKQNLVVHKRIHTGEKPFSCDVCEKKFNVKEHLVRHKRLHTGEKPFSCDVCEKKFNQKQHLVAHKRLHTGEKPFSCDVCEKKFNVKQHLVRHKRLHTGEKPFSCDVCEKKFNVKQHLVAHKRLHTGKKPFSCDVCEKKFNVKQHLVRHKRLHTREKPFSCDVCEKKFNGKQHLVAHKRLHTGEKPFSCDVCDKKFVHSQLLIRHKRTHTGAKPFSCYICEKKFKHQCVLVAHERIHTGEKPFSCDVCEKKFNIKQNLVVHKRLHTGEKPFSCDVCEKKFNVKQHLVVHKRLHTGEKPFSCDVCEKKFNVKEHLVRHKRLHTGEKPFSCDVCEKKFNQKQHLVAHKRLHTGEKPFSCDVCEKKFNVKQNFVRHKRLHTGEKPFSCNVCEKKFNVKQNLVVHKRLHTGEKPFSCDVCEKKFNGKQHLVVHKRLHTGEKPFSCDVCEKKFNVKQHLVRHKRLHTGKESFSCDECERKFNSEHHLIKHKLKKHTTEKPAACDGHNKTFKFKKSLVKQRLVHLRPPTPPYVCEDCDLIITNQNELKDHKHKNIVILINK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-