Ccar003435.1
Basic Information
- Insect
- Chrysoperla carnea
- Gene Symbol
- -
- Assembly
- GCA_905475395.1
- Location
- FR997756.1:7165586-7168243[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 5.3e-06 0.00012 22.8 1.4 1 23 38 60 38 60 0.95 2 23 0.00029 0.0062 17.3 2.9 1 23 66 88 66 88 0.96 3 23 8.1e-06 0.00017 22.2 0.9 1 23 94 116 94 116 0.97 4 23 5.9e-05 0.0013 19.5 1.9 1 23 122 144 122 144 0.98 5 23 4.7e-06 0.0001 22.9 1.3 1 23 150 172 150 172 0.98 6 23 3.5e-05 0.00077 20.2 1.7 1 23 178 200 178 200 0.97 7 23 6.1e-06 0.00013 22.6 1.1 1 23 206 228 206 228 0.97 8 23 5.5e-07 1.2e-05 25.9 0.8 1 23 285 307 285 307 0.98 9 23 0.00044 0.0096 16.7 4.6 1 23 313 335 313 335 0.98 10 23 0.00011 0.0024 18.6 0.6 1 21 341 361 341 362 0.95 11 23 0.00028 0.006 17.3 0.1 1 23 483 505 483 505 0.97 12 23 1.3e-06 2.7e-05 24.7 2.6 1 23 511 533 511 533 0.98 13 23 0.091 2 9.4 4.5 1 23 539 561 539 561 0.94 14 23 4.5e-07 9.7e-06 26.1 0.7 1 23 592 614 592 614 0.98 15 23 0.00064 0.014 16.2 5.7 1 23 618 640 618 640 0.98 16 23 8.8e-07 1.9e-05 25.2 1.4 2 23 646 667 645 667 0.97 17 23 4.3e-05 0.00093 19.9 3.3 1 23 673 695 673 695 0.97 18 23 0.0011 0.024 15.5 3.2 1 23 701 723 701 723 0.98 19 23 0.00037 0.008 17.0 0.4 1 23 729 751 729 751 0.98 20 23 4.7e-05 0.001 19.8 1.8 3 23 759 779 757 779 0.98 21 23 0.0019 0.042 14.7 3.8 1 23 785 807 785 807 0.97 22 23 0.00013 0.0028 18.4 1.0 1 23 813 835 813 835 0.97 23 23 0.0018 0.038 14.8 1.6 1 21 858 878 858 879 0.91
Sequence Information
- Coding Sequence
- ATGTCTGAAAATTCCAATCTGTCAACGAAAGATTTGAACATTGAATTGCTGCCAAAAGTGGAAATGATTATTAAAGATGAAAAACTAGAAACCGAAGCAGTAGAGAAACCATTTTTATGTGATATATGTGGTAAAACGTTTGCTCGCCAAAGCAGTGTACGGAATCATAAACGAAAACATACCGGAGAAAAACCATTTTTGTGTAAAGTTTGTGATAAAAGTTTTATGTATCCAAATCATTTACTGCAACATAAACGAATGCACACTGGTGAGAGACCTTTTGCATGCGACGTCTGTGGTAAAACATTTGCTCAAAATTGTAATTTAATTGATCATAAACGGATTCATACTGGGGACAAACCATATGCATGTAATTTTTGTGAAAAAAAATTCACGAAACAAGATGCTTTATCCAAACATAAACGCGTTCATACTGGAATAAAACCATATTCATGTGATATCTGTGATAAACGATTTACGCAAAAGATCACTTTAGAAACTCACAAACGAATTCATACCGGACAAAAACCATTTGCTTGTGATGTTTGTTTTAAAAGATTTAAACAGAAAAGTAATTTGGATCAACATGTGAGGAACCACACCGGACATAAACCATATTCTTGTGATGTTTGTAATAAATCGTTTTCCCAACAAATTAGTTTAACTAAACATAAATTAATTCATGAAAAAACTGAACAAATTAGTGAAGTGAAGCAGGAAAATGTTTTTATGGAAAATAAACAAATTAATAATGAAGTGAAACCATTTTCTTGGGATAATATTTGTGGTAAGAAATTTGTACTTCAAAATAGTTTACTTGTAAATAAAGTTGTTCATAATGGAGAAAAATCATTTCCATGCGATATTTGTAATAAACCATTTACAACAAAAAACAATTTAATTAAACACAAACGAATTCATTTGGGAATAAAACCATTTTCATGTAACGTTTGTTTTAAAACATTTACACAAAAGTGCACTTTAGATAATCATTTACGAATTCACACCGGACAGAAACCATATTCTTGTGAAATCTGTAACAAATCATTTATTCAACGAATTAGTTTAATTAAACATAAAAAGAAAGATTGTGAAAAGGAAAAACTAAAACAAACGAAACAAGAAAGTTGTTACGTTGAAGAAAATAACTATGTTGCTGAAAGTTACACCGATGATTACGTTGAAGAAGATTACAGCGAAGAAGAACCTACGATTGAAGTGGAACCTTCAATTGAAATGGAACCTACGATTGAAGTAGAACCTACAATTGAAGTGGCGGCAAATACAACAGGAAACTATAATGATGTTAAATTAGAAGAAATGAAGCCAGAAATTGTTTTCGAAGAACAAAAACAAATTTATTCTGAAGAAAAACCTACAGAAGTAAACGAAAAACCTCAACAAGAAACTATTTTCGTTGAACCTAAACCAATTAAGGAAAAACCATTTCCTTGTGATATTTGTGGTAAAAAATTTAGTCTTCTAGGTGGTTTACTTGTACATAAAAGACTTCATACGGATGCAAAACGTTTTTCATGTGATTATTGTGAAAAAACCTTTACCCAACAAACTAGTTTGATCAATCATCAACGAAAACATACGGGAGAGAAACCATTTTTATGTGATATTTGTGGTGAGAGTTTTTCTCATCAAATTAATCATTTTAATCATAAACAAAAACATTTTGAAGAAATTCCATTTGCGAATGATAAAACATCCACGGATCAAAAAAGTTACCGTCATGCCAAACAAATTTATGCCGATAAAAAATATTTTCCTTGTGATGTTTGTGATAAAGTGTTTACTCAACAAAGCAAGTTAACCAGACATTCGCGAGTCCATACGAAAATTTTTTCGTGTACTTTTTGTAGTAAAACATTCACCCGTCATAGCAGTTTAGTTTATCATAAACGAATTCATTCTCCAGAAATTCTTTCTTGTGATATGTGTGATAAAACATTTACTCGGGAAAGTAATCTCCGAGTACATAAAAGAATGCATACTGGAGAAAAACCTTTTGCTTGTGATGAATGTGATAAAGTATTTACTCATCAAAGTAGTTTTGTTTATCATAAACGAAAACATCTTGGAGAAAAACCTTTTTCATGCGATGTTTGTAATAAAACATTTATGTACGCTAATCATTTAGATCAGCATAAGCGAAGTCACACGGGGGAACGACCATTTTCATGTGATATTTGTAATAAAACTTTTATAGCGAAAAGCGAAGTAGTTACACATAAACGGATTCATACTGGTGAAAGACCATTTGGATGTGATTTTTGTGATAAAAAATTTACCATAAAAGATAATTTAACTAAACATCGACGAATTCATACTGGAGAAAAACCATTTAGCTGTGATTGTTGTGATAAAACATTTACGCAGAAAATCACTTTAGAGAATCACAAACGAATTCATACCGGAGAAAAACCATTTGAATGTGATATTTGTGGTGAAAAATATATTCAGCGAATTCATTTAACTAAACATAAATTGATTCATACCGGGGAAATAGAAAGTAAGAAACGTGGTCGTAAACGAACTAATGGAGAAAAATTAACCAAACAATTTTTATGTGATTTATGTAAAAAAAGATTTACTTCTGAAAAACATTTAGCTAGACATAAACAAATTGAAGCAAAAAAATTAACTTAA
- Protein Sequence
- MSENSNLSTKDLNIELLPKVEMIIKDEKLETEAVEKPFLCDICGKTFARQSSVRNHKRKHTGEKPFLCKVCDKSFMYPNHLLQHKRMHTGERPFACDVCGKTFAQNCNLIDHKRIHTGDKPYACNFCEKKFTKQDALSKHKRVHTGIKPYSCDICDKRFTQKITLETHKRIHTGQKPFACDVCFKRFKQKSNLDQHVRNHTGHKPYSCDVCNKSFSQQISLTKHKLIHEKTEQISEVKQENVFMENKQINNEVKPFSWDNICGKKFVLQNSLLVNKVVHNGEKSFPCDICNKPFTTKNNLIKHKRIHLGIKPFSCNVCFKTFTQKCTLDNHLRIHTGQKPYSCEICNKSFIQRISLIKHKKKDCEKEKLKQTKQESCYVEENNYVAESYTDDYVEEDYSEEEPTIEVEPSIEMEPTIEVEPTIEVAANTTGNYNDVKLEEMKPEIVFEEQKQIYSEEKPTEVNEKPQQETIFVEPKPIKEKPFPCDICGKKFSLLGGLLVHKRLHTDAKRFSCDYCEKTFTQQTSLINHQRKHTGEKPFLCDICGESFSHQINHFNHKQKHFEEIPFANDKTSTDQKSYRHAKQIYADKKYFPCDVCDKVFTQQSKLTRHSRVHTKIFSCTFCSKTFTRHSSLVYHKRIHSPEILSCDMCDKTFTRESNLRVHKRMHTGEKPFACDECDKVFTHQSSFVYHKRKHLGEKPFSCDVCNKTFMYANHLDQHKRSHTGERPFSCDICNKTFIAKSEVVTHKRIHTGERPFGCDFCDKKFTIKDNLTKHRRIHTGEKPFSCDCCDKTFTQKITLENHKRIHTGEKPFECDICGEKYIQRIHLTKHKLIHTGEIESKKRGRKRTNGEKLTKQFLCDLCKKRFTSEKHLARHKQIEAKKLT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00332644;
- 90% Identity
- -
- 80% Identity
- -