Ccar003818.1
Basic Information
- Insect
- Chrysoperla carnea
- Gene Symbol
- -
- Assembly
- GCA_905475395.1
- Location
- FR997756.1:8963108-8965568[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 0.092 2 9.4 6.8 1 23 76 98 76 98 0.98 2 22 1e-07 2.2e-06 28.2 1.3 1 23 104 126 104 126 0.99 3 22 7.3e-05 0.0016 19.2 0.1 1 23 132 154 132 154 0.98 4 22 0.0026 0.057 14.3 0.3 1 23 160 182 160 182 0.97 5 22 2.1e-05 0.00045 20.9 1.0 1 23 188 210 188 210 0.98 6 22 0.00014 0.003 18.3 1.5 1 23 216 238 216 238 0.97 7 22 1.7e-06 3.8e-05 24.3 1.1 2 23 244 265 244 265 0.97 8 22 0.00021 0.0046 17.7 3.2 1 23 271 293 271 294 0.96 9 22 0.0016 0.035 14.9 4.0 1 23 366 388 366 388 0.97 10 22 3e-06 6.5e-05 23.5 0.3 1 23 394 416 394 416 0.98 11 22 2.9e-06 6.3e-05 23.6 0.8 1 23 422 444 422 444 0.98 12 22 8.7e-05 0.0019 18.9 0.3 1 23 450 472 450 472 0.98 13 22 2.5e-05 0.00053 20.7 0.8 1 23 478 500 478 500 0.98 14 22 1e-06 2.2e-05 25.0 0.8 1 23 506 528 506 528 0.98 15 22 0.0018 0.04 14.8 0.7 3 23 536 556 534 556 0.96 16 22 7.3e-07 1.6e-05 25.5 0.4 2 23 562 583 561 583 0.97 17 22 0.00065 0.014 16.2 1.5 1 23 589 611 589 611 0.97 18 22 0.00011 0.0023 18.6 2.0 1 23 617 639 617 639 0.98 19 22 2.1e-06 4.6e-05 24.0 0.6 1 23 645 667 645 667 0.97 20 22 0.00024 0.0051 17.6 0.7 1 23 673 695 673 695 0.97 21 22 6.9e-05 0.0015 19.3 1.2 1 23 701 723 701 723 0.98 22 22 4.6e-05 0.001 19.8 0.8 1 23 729 751 729 751 0.97
Sequence Information
- Coding Sequence
- ATGTCTAATTATCCACTCAATCAATTAATTACAACTGGAGAAATTAAAATTGAAAAACTACAAACAGAATTAGAAATTCAAGATGGAATATTATTTGAAAGAAATGCAGATCGAACAATTCAAGTTAACAACTCAGTTTTTATAAAAGAAGAAAACATTAAAATCGAACAAGTACACACAGAATTATTAATAAAAGAAGAAGATATCGAAGAAGCCGAAGAACATTTTACGTGTGATGTTTGTAATAAAATTTTTACCAAACATTGTTTTTTATATTTACACAAACGAATTCATAATGCGGACAAACCTTATACATGCGATGTTTGTGGCAAGAAATTTATTGATAAAAGCCAATTAACTCGGCATAAACGAATTCATACAGGTGACAAACCTTTTGTTTGCGATGTTTGTGATAAAAGATTCGCCGCAAAAGTAAATTTAGTTGTACATAAACGAATTCATACAGGAAAAAAACCTTTTGCATGCGATTTATGCGATAAGGAATTTATTATACGTCAATATTTAGTTTCTCATCGACGAATTCATACGGGGGAGAAACCTTTTGTTTGTGATTTTTGTGATAAAGCATTTAATCAGAAGACAAGTTTAGTGAGTCATAAACGTGTTCATACGGGTGAAAAACTGTTTGCTTGTGAAGTTTGTGATGAAAAATTTATTCATAAAACAAGTTTAATGAGACATAAACAAATTCATTCGGGAGAAAAACCAACATGTAGTGTTTGTGATAAAAAATTTACGGACAAATCAAGTTTAATTAGACATGAACGAATCCATACGGGAGAAAAACCATTTGTGTGTGATTTATGTGATGAAAAATTCAATCAGAAAACAAGTTTAGTCTCACATAAACGAAAACACCACATTGGAGAAAATCAAAAAATAATTACAATGGAAGAATTACAAACAGAATCAAAAATTAAAGCAATTGAAGGTAAAGAATCAAAATACAAAAATATAATATTTGAGACAAATGCATCCAGAAATCAAACAATTCTGGTAGAAAACATTAAAATCGAACAAGAATTAATTCACACCGAATTAATAATAAAAAATGAAGAAACCGAAGATCACGGATTTGCCTGTGATGTGTGTAATAAAAGCTTTAACAAGCATTACTTTTTAGTAAAACATAAACGACTTCATACGGGTGAGAAACCCTTTACATGTGCAGTTTGTGATAAGAAATTTATTGATCGAAGCCAATTAGCAAGGCATGAACGAATTCATACCGGGGTGAAACCTTTTGTGTGTGATATTTGTGATAAGAAATTTACACAACGTGCAAATTTGGACACACATAAACGGATTCATACGGAAGATAAATCTTTTACTTGCGATATTTGTAACAAAACATTCGGTGAAAAAGCAAATTTAGTTGGGCATAAACGAATTCATGCAGGGAAAAAACCGTTTGTTTGTGATGTTTGTGATAAGGAATTTACGAAGCAACAAAATTTAGATAGTCATAAACGAATTCATAACGGGGATAAACCTTTTACGTGTGTTGTTTGTGGTAAAAAATTCACACAAAAATCTAGTTTAGTCGCTCATAAACGCATTCATGCAGGAGAAAAACCTCTGGCATGTGATCTTTGTGATGAAAAATTTATTCACAAAATAAGTTTAGTAAGACATAAACAAATTCATTCGGGAGCAAAGCTAACATGTCCTGTTTGTGATAAAAAATTCACCGATAAGTCAAGTTTAATTAATCATGAACGAATTCACACTGGAGAAAAACCGTTTGCGTGTAATTTCTGTGATGAGAAATTCACTCATAAAACAAGTTTAGCTGGTCATGAACGAGTTCACACTGGAGAAAAACCTTTTGTGTGCGATGTTTGTGATGAAAAATTCACGCACAGATCAAGTTTACTTCTACATAAACAAAGTCATTCGGGAGTAAAACCTTTTGCTTGTGATATGTGTGATAAACGATTCACGGACAAAACAAATTTAGTTGCGCATAAACGAATTCATACAGGAGAAAAACCTTTTGCGTGTGATTTTTGTGATAAGGAATTTATTTCACGTAAATATTTAGTTCTTCATCGACGAATTCATACGGGGGAAAAACCGTTTGTTTGTGATTTTTGTAAAAAAGCATTTAATCAGAAAACAAGTTTAGTTATTCATAAAAGAATTCATACGGGAGAAAAACCTTTTGCTTGTGATGTTTGTGATCAAAAATTCTCTCAGAAAATAAGTTTAGTTAGACATAAACAAACTCACGTATGA
- Protein Sequence
- MSNYPLNQLITTGEIKIEKLQTELEIQDGILFERNADRTIQVNNSVFIKEENIKIEQVHTELLIKEEDIEEAEEHFTCDVCNKIFTKHCFLYLHKRIHNADKPYTCDVCGKKFIDKSQLTRHKRIHTGDKPFVCDVCDKRFAAKVNLVVHKRIHTGKKPFACDLCDKEFIIRQYLVSHRRIHTGEKPFVCDFCDKAFNQKTSLVSHKRVHTGEKLFACEVCDEKFIHKTSLMRHKQIHSGEKPTCSVCDKKFTDKSSLIRHERIHTGEKPFVCDLCDEKFNQKTSLVSHKRKHHIGENQKIITMEELQTESKIKAIEGKESKYKNIIFETNASRNQTILVENIKIEQELIHTELIIKNEETEDHGFACDVCNKSFNKHYFLVKHKRLHTGEKPFTCAVCDKKFIDRSQLARHERIHTGVKPFVCDICDKKFTQRANLDTHKRIHTEDKSFTCDICNKTFGEKANLVGHKRIHAGKKPFVCDVCDKEFTKQQNLDSHKRIHNGDKPFTCVVCGKKFTQKSSLVAHKRIHAGEKPLACDLCDEKFIHKISLVRHKQIHSGAKLTCPVCDKKFTDKSSLINHERIHTGEKPFACNFCDEKFTHKTSLAGHERVHTGEKPFVCDVCDEKFTHRSSLLLHKQSHSGVKPFACDMCDKRFTDKTNLVAHKRIHTGEKPFACDFCDKEFISRKYLVLHRRIHTGEKPFVCDFCKKAFNQKTSLVIHKRIHTGEKPFACDVCDQKFSQKISLVRHKQTHV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -