Ccar020127.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Chrysoperla carnea
Gene Symbol
-
Assembly
GCA_905475395.1
Location
FR997754.1:1961188-1963809[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 21 0.00067 0.014 16.2 4.6 1 23 85 107 85 107 0.98
2 21 1.2e-06 2.6e-05 24.8 1.6 1 23 113 135 113 135 0.98
3 21 9.8e-07 2.1e-05 25.1 2.3 1 23 141 163 141 163 0.98
4 21 0.00029 0.0062 17.3 0.7 1 23 169 191 169 191 0.94
5 21 8.4e-06 0.00018 22.1 2.8 1 23 197 219 197 219 0.98
6 21 6.8e-07 1.5e-05 25.6 1.3 1 23 225 247 225 247 0.98
7 21 0.00026 0.0056 17.5 1.0 1 23 253 275 253 275 0.98
8 21 9.5e-06 0.00021 22.0 5.9 1 23 281 304 281 304 0.97
9 21 4.5e-07 9.8e-06 26.1 2.0 1 23 345 367 345 367 0.98
10 21 0.0043 0.093 13.6 3.3 1 23 373 395 373 395 0.98
11 21 1.1e-06 2.4e-05 24.9 1.1 1 23 401 423 401 423 0.97
12 21 4e-05 0.00087 20.0 4.6 1 23 429 451 429 451 0.98
13 21 3.6e-06 7.8e-05 23.3 1.6 1 23 544 566 544 566 0.98
14 21 4.5e-06 9.8e-05 23.0 1.1 1 23 572 594 572 594 0.98
15 21 1.1e-06 2.4e-05 24.9 1.9 1 23 600 622 600 622 0.98
16 21 0.00012 0.0027 18.5 1.8 1 23 628 650 628 650 0.98
17 21 8.2e-06 0.00018 22.2 1.5 1 23 656 678 656 678 0.98
18 21 7.5e-06 0.00016 22.3 0.3 1 23 684 706 684 706 0.97
19 21 3.3e-06 7.2e-05 23.4 2.2 1 23 712 734 712 734 0.98
20 21 0.00019 0.0041 17.9 1.2 1 23 740 762 740 762 0.99
21 21 1.5e-05 0.00033 21.3 3.8 1 23 768 790 768 790 0.97

Sequence Information

Coding Sequence
ATGGAAGATGGGCTAATTGTAGTTAAACATGGAATCGGTAAATCAGAAGTTAAACTTGGAAAAGAAGAAACATTGGACGAAAATATTACAACAGAAAATGTTCTGATTAAACAAGAGATCGATTTAGAAGAAATATTTATTAAAGAAGAAATATCAGAGGAAAGTGAAAATTTAGAACATGAACTAATTACAGCTGAATATGAAACTGATGAATTAGAAGATTCTACTTCAAGATTTCAAGAAAATAAATCATTTTCTTGTGAGTTTTGTGACAAAACATTTAAGTGTCGAAGTTATCTAGCTGTGCATCAACGAACTCACAATGGAGAAAAATCATTTTCATGTGAAATTTGTGATAAAAAATTTAGTCAAAAATCTTATTTAGCTCAACACAAACGAATTCACACTGGATACAAACCATTTTCCTGTAAAGTTTGTGATAAAAAATTTAAAAATCAAAGAGATTTACTCGTACATCAACGAACTCATACCGGAGAAAAACCATTTTCATGTGATATTTGTGGTAAAAAATTTACTGTAGTGAATAGTTTGAATAGACATAAAGTGAATCACACCGGAAAAAGGCCATTTTCTTGTGAAATTTGTGATAAATCATTTACCCATAACAATTATTTAATAAGCCATAAACGAATTCATACCGGGGAAAAACCATTTTCGTGTAAAATTTGTGATAAAAAATTTACTCAGTATCCCAATTTAATGGATCATATACGGACTCATACAGGTGAAAAACCATTTTCCTGTAAAATATGTGAAAAAAAATTTAGTTGGCAAAGTAATTTAATCAGCCATAATCGTATTCACACGGGAGAAAAACCTTTTTCGTGTGAGATTTGTCATAGAACGTTTTCACAGCAAAGTAATTTGAATACACATCATAAAAAGATTCACACTGGGAAAAAACGTTTTTCATGTGAAATTACTACAGAAGAAAATGATGCAATGGAACATAACTTAAATACAACTGAAATTGATAAAGATTTTGCTTCAAGATTTCAAGAAAATAAACCATTTTCATGTGAGTTTTGTAATAAAACCTTCAGTCGACGAGGTAACTTAATTGAACATCAACGAACTCATACTGTCGATAAACCATTTTCTTGTAAAATTTGTGATAAAAAATTTCGCTGGCGGCATAGTTTAATTAGTCATAATCGAATTCACACGGGAGAAAAACCTTTCTCGTGTGAGATTTGTGATAAAACATTTACCCAACAGAGTAGTTTGAATACACATAAAGAAATCCATTCTAGGGAAAATAGTTTTTCATGTGAAATTTGTAATAAAAACTTTAATCACAGAACGTCTTTAGTTCGTCATAAACGAACTCATTCAGTTAACCAGCAATCTGGTTTAAATTTAACCCATGAAGTGTTCGAGGAGGAAAGTGATTTGATTAAAGAAGAATTTGATGATGGAAAACTTGAAGAAGAAAACGCGAGAAATGAAATTCTTCCAGAAAAAAATATTCAGATCAAAGAAGAAGTAAATAACGAGCAAGTTGTGGTTAAAGAGGAAACCTTAGAAGAAAATGACTCAATGGTCCAGCTGAAAGATACAACCGAACAATTAGAAGATTCTACTTCAAAATCTCAGCAAAACAAACCATATTCTTGTGATTTTTGTGATAAAAGATTTAAAAATCAAAGAAATTTAATTGGGCATCAACGAATTCATACCGGGGAAAAACCGTTTTCTTGTGAAATTTGTGGTAAAAACTTTACACAACAAAGTGGATTATATCTACATAAAAGATCACACACGGGAGAAAAACCATTTTCATGTAATGATTGTGGTAAAAAATTTTCCTATGAAAATAATTTAAATGTTCATAAACGAACACATACTGGTGATAAACCATTTTCATGTGAGGTGTGTGATAAAACATTTTCTCATCTTCAAGGTTTAGTTCAGCATAAAAGGTTACATACGGGTGAAAAACCATTTTCCTGTGAAATTTGTGATAAAAACTTTAATCAACAGACTACATTAAATAGACATAAAATGATTCATACCGGTGAAAAATCATTTTCATGTGAAATTTGTGATAAAAAATTTATTCAACCTGGTGCGTTAAAAAGACACAAAGTAACTCACACTGGAGAAAAACTATTTTCATGTGACGTTTGTGATAAAAATTTTCCACATAAAAGTAGTTTAATTAGGCATAAAAGAATTCATACAGATGAAAAACCGTATTCATGTGATTTTTGTAATAAAGCATTCAATCGACAAAGTATTTTAATTGTACACAAACGAACTCACACGAGAGAAACATCATTTTCTTGCGAAGTTTGTGGAAAAAAATTTAGTCATAAAAGTAGTTTAAGTAAACATAAAACAATTCACCTCCAAGACGATCGTATCAATGAAGTATTTGACGAAGAAAATGATTTAGTTAAAAAAGATGCTGAAAAACTATTTTCACTTGAATTGGATGATAAAAAACCTGAAAAAAATAATAAATTGAATGAAGAATTCACCAAAAATGAAGTCATTGAAGAAGAAAATGTTCAGATTAAAGAAGAAATAAATTTGGAACAAGTATTGATTAAAGAGGAAATATTTGAAGAAAATGACACAATGATGGCGATGATATAA
Protein Sequence
MEDGLIVVKHGIGKSEVKLGKEETLDENITTENVLIKQEIDLEEIFIKEEISEESENLEHELITAEYETDELEDSTSRFQENKSFSCEFCDKTFKCRSYLAVHQRTHNGEKSFSCEICDKKFSQKSYLAQHKRIHTGYKPFSCKVCDKKFKNQRDLLVHQRTHTGEKPFSCDICGKKFTVVNSLNRHKVNHTGKRPFSCEICDKSFTHNNYLISHKRIHTGEKPFSCKICDKKFTQYPNLMDHIRTHTGEKPFSCKICEKKFSWQSNLISHNRIHTGEKPFSCEICHRTFSQQSNLNTHHKKIHTGKKRFSCEITTEENDAMEHNLNTTEIDKDFASRFQENKPFSCEFCNKTFSRRGNLIEHQRTHTVDKPFSCKICDKKFRWRHSLISHNRIHTGEKPFSCEICDKTFTQQSSLNTHKEIHSRENSFSCEICNKNFNHRTSLVRHKRTHSVNQQSGLNLTHEVFEEESDLIKEEFDDGKLEEENARNEILPEKNIQIKEEVNNEQVVVKEETLEENDSMVQLKDTTEQLEDSTSKSQQNKPYSCDFCDKRFKNQRNLIGHQRIHTGEKPFSCEICGKNFTQQSGLYLHKRSHTGEKPFSCNDCGKKFSYENNLNVHKRTHTGDKPFSCEVCDKTFSHLQGLVQHKRLHTGEKPFSCEICDKNFNQQTTLNRHKMIHTGEKSFSCEICDKKFIQPGALKRHKVTHTGEKLFSCDVCDKNFPHKSSLIRHKRIHTDEKPYSCDFCNKAFNRQSILIVHKRTHTRETSFSCEVCGKKFSHKSSLSKHKTIHLQDDRINEVFDEENDLVKKDAEKLFSLELDDKKPEKNNKLNEEFTKNEVIEEENVQIKEEINLEQVLIKEEIFEENDTMMAMI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-