Ccar004208.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Chrysoperla carnea
Gene Symbol
-
Assembly
GCA_905475395.1
Location
FR997756.1:49769992-49780893[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 26 4.4e-05 0.00095 19.9 0.2 2 23 239 260 238 260 0.97
2 26 0.00019 0.0041 17.9 3.7 1 23 266 288 266 288 0.98
3 26 0.019 0.41 11.6 3.5 1 23 294 316 294 316 0.97
4 26 0.003 0.064 14.1 0.9 1 23 341 363 341 363 0.98
5 26 0.02 0.43 11.5 4.5 1 23 369 391 369 391 0.96
6 26 3.7e-05 0.00081 20.1 1.6 1 23 397 419 397 419 0.99
7 26 0.00064 0.014 16.2 2.7 1 23 425 447 425 447 0.97
8 26 4.7e-06 0.0001 22.9 1.6 1 23 453 475 453 475 0.98
9 26 3.6e-05 0.00078 20.1 1.2 1 23 481 503 481 503 0.96
10 26 6.7e-06 0.00014 22.5 2.2 1 23 509 531 509 531 0.98
11 26 0.00016 0.0034 18.1 0.2 1 23 537 559 537 559 0.98
12 26 5.1e-05 0.0011 19.7 2.6 1 23 565 587 565 587 0.99
13 26 0.0001 0.0022 18.7 0.6 3 23 604 625 602 625 0.96
14 26 3.4e-05 0.00073 20.2 3.9 1 23 631 653 631 653 0.99
15 26 0.0027 0.058 14.2 0.4 2 23 897 918 896 918 0.97
16 26 4.3e-05 0.00092 19.9 1.5 1 23 924 946 924 946 0.98
17 26 0.00066 0.014 16.2 1.4 1 23 952 974 952 974 0.98
18 26 0.0028 0.061 14.2 0.1 2 23 1006 1027 1005 1027 0.96
19 26 0.0001 0.0022 18.7 1.5 1 23 1033 1055 1033 1055 0.96
20 26 1.7e-05 0.00036 21.2 1.1 1 23 1061 1083 1061 1083 0.98
21 26 0.00016 0.0034 18.1 1.9 1 23 1089 1111 1089 1111 0.98
22 26 0.00045 0.0096 16.7 1.4 1 23 1117 1139 1117 1139 0.98
23 26 0.00035 0.0076 17.0 0.3 1 23 1145 1167 1145 1167 0.94
24 26 5.8e-06 0.00012 22.7 1.7 1 23 1173 1195 1173 1195 0.98
25 26 0.00078 0.017 15.9 0.1 1 23 1201 1223 1201 1223 0.98
26 26 2.4e-06 5.1e-05 23.9 2.1 1 23 1229 1251 1229 1251 0.98

Sequence Information

Coding Sequence
ATGAATACAAATTTGCGGCTAGCAAATTTTCAGAAAATTTGCAGAACTTGTTTGATAGCAAAAGACAATTTACAAGAAATTTTTAGTAGTCTAGATTTATTAAAAGAATGTACTTCAATACAAATTGACATGGAAGATGATTTCCCAAAATTAATCTGCGTTGAATGTACGGGGAAACTAAATACTGCTCATGAATTCAGAAAACAATGTGAACAATCTCAACAAGTTTTGTTACAACTGAGGACATCGAATGATAGCCCTGTAAAACTTGAAAGTGACATTACGGATTTCCAATTACAAAACGAAAAAACTGAAAATGTAGAATTAATTGAAATTGTTATTAAAACCGAGCCCCAACCCGAAGAATCTTACAATACAAACGATGATTTAGCCAGTGTACACGACTTAATTAAAAATTTTACCAGTGAAAATAAAAGTGTGGGTGTTTGCAAAAAACAAAAAATTATTTTAGAAAGTGTAAATATTAATCTTACCAAAGATGGTTTACCTTTTAATTCTGATGATCAACCTGTAAAAAAAATATTAAAGTTTGAAAATGATTATTTAATTCATGAAGATCATGATTATGACACATGTATACGAAGCATTGACAAATCTGTAGATGAAAATAAATGTAATGAAAAACCTAGTACTCTAAAGACCCAGAGAAAATTGGATGTAAAAGAAGATAGTGTTACAATAAAAAATGGATTATCGTGTCCAAAATGTGAAAAATCGTTTGAATTAAACTCCGATTTAGAAATTCATATGTTGAAACATCAAGAGTTTGATGAATATATTTGTCCCAAATGTTCAAAGTGTTTCGAAACCGTAACAAAGTTAAAAAGACATCTTAGCACACATTTGGTTAACAAGCCACATAAATGCAATGTTTGCAATAAAAGTTTTAATGATGTTCGTCGCAGAAATAGTCATTTACGAATTCATAAACGTAATGAAGATAACAATTGTCAAACTCTTGATAAAAATATTAATGAACATTTAAAAAACAATGGAAGTTATTCATGTCTCCAGTGTAGTAAATGTTTTGAATTAGAAACAGATTTAGAAATTCATATGTTAATTCATCAAAAGTTTGATGAATTTAACTGTCATATGTGCTCAAAGTCTTTCGAAAATGAAATTGGTTTAAAACATCATTTCATCAGACACATGGTTTACAAACCATTTAAGTGTAACTTTTGTGATAAAAGCTATGCTAATTCTGATGATCGAAATCGACATTTACGAATTCATACAGGTGAAAAACCTCATGTATGCTCTACATGTGGGGAACGATTCATGGAATCGAGTAAATTATCACGTCATATGAAATATCATCTTGGTATAAAAAATTTCGTGTGTACAGTTTGTTCTAAATCGTTTACTTTTTCACAAGAGCTTAAACGTCATATGCTTATGCATACTGGTGAAAAACCTTACTTGTGTACAGAATGTGGGAAAAGTTTTCGTCAGCTGCAAAGCTATAAAGAACATCAAATTACACATTCGGGTGAACGTCCGTATTCATGTACAGAATGTGAGAAGACTTTCACTTTGAGTAAATATTTAAAATGGCATATGCGTTCACATACAGGTGAAAAACCATTTGTTTGTAAAATATGTGAGATGGCTTTTACAACAGCACGTGCTCTTGTTAGACACAATCGATCTCATACTGGAGAAAGGCCGTATTCTTGTGATATTTGTAAAAAAACTTTTAAATCAAGTCAGGAAGTAACTCAACATAAACGGACCCATAATAAAATTCCCCAATTTTTCCTTAAGCAAGGGGATAGTCCATATTGGTGTGATATTTGTGGAAAGACTTTTAAGGCAAATAAATATTTAACACGCCATAAACGAGAAGCACATGTTGAGGGAAAACCATATTCCTGTGATTTATGTGAAAAGGCTTTTAAATATAGTAAACATTTACGAGCACATAAACGAACACATGACGAAACAAGAACCTGTTTGATAAAAAAAGATAATTTACAAGCTATTTTCCGTATCGTAGATTTATTAAAAGAATGCACTTCAATACAAATTGATATGGAAGATGATTTACCAAAATTAATTTGCCTCGAATGTACTAACAAACTAAACACGGCCTTTGAATTCAGAAAACAATGTGAAGTATCTCAAAAAATTTTGTTACAACTAAGGCAGTTCGGTGAAACTTCTGTTAAACTTGAAAGTAACGGATCAAATGTTCATTTACAAAATGGAAAAAACGAAAATTTAGAATTAAATGAAATCTATATTAAATCCGAGGAATCTTTTAAAAACGAAATAAATTCTGATACATCCGATGAAAATAATAAATTTGACGATGTTTTTAATTTTGTGAAAGTTAAACAGCTAACCAGTATACATGAGTTTGTCGAAACTAAAAATATTTTAGACGTTTCTAAAACTCAAAATATTAATGTAGAAAGTGTAGATACTAATCTTTCAAAGGACAGTTTACTTAGTGATTTTAAGGACAAAGATTTAGATAATAGATTAAAGATTGAAGATGAAAATGAAGAAGATATTCATGAAAATAACGATTGCGATGCAGGAAATAGTGATGATGAATCTTTAGCTTTAAGGAAAAATAAATGTAAAAAAAAGTCTAGTAAGTTAAAGGTAAAGAGAGAATTGCAAGTGAAACAAGATACTCTTACAATAAAAAATGGATTATCATGCCCAAAATGTAAAAAATATTTTGAATTAGAAACAGATCTGGAAATTCATATGTTAAAACATAAAAAGTTTGATGAATATATTTGTCCTAAATGTTCAAAGTCTTTCGAAACTGTTACAAAGTTAAAAAGACATCTTAGCACACATTTGATTAACAAACCGTATAGATGCAATTTTTGTAATAAAAGTTTTATTGAAGCTCGTAACAGAAATCGTCATTTACTGGTTCATAAAGGTGATAAAGATACTTCTAATCAAAATAGTGACGAATCAATTGCTTTGGGAAAACATAAGTTATTTAACATTCCAACAAGAGACGGACTTCCATGTCCTCAATGTGAAAAATTTTTTGAATTACAAACAGACCTAGAAATTCATTTGTTGAAACATAAGAAATTTGAAGAATTTGTTTGTCCTATGTGCTCAAAGTCTTTTGAAAATGAAAAAAGTTTAAAACGTCATTTCGATAGACACATGATTGACAAGCCGTACAAATGTAATGTTTGTGACAAAAGTTTTGTTAATTCTGACGATCGAAATCGTCATTCACGAATTCATACAGGTGAAAAACCTTACGTATGCTCAACATGTGGTAAACGGTTTACAGCTTCTAATAGATTGTCACGTCACATGAAATATCATATTGGTATAAAGAATTTCGTGTGTACATTTTGTTCTAAATCGTTCATGTTTCCACGAGAGCTTAGAGGTCACTTGCGTACGCATACTGGTGAAAAACCTTACCTATGTACAGAATGTGGGGAAAGTTTTAGCCAACTGAAAGGTTTAAAAGTACATAAAATAAACCATACGGGAGAAAGGCCATTTTCATGCACAGAATGTGACAAAACTTTTACTATAAATAAATATTTAAAAGAACATATGCGTATCCATACAGGAGAAAAGCCTCATGTATGTAAGATATGTGGAGTGGGCTATACATCGCCAGGTGCTCTTGTTGTACATAATCGAACTCATACTGGGGAGAGACCGTTTCCTTGTGATATTTGCGAAAAGACTTTCAAAACAAGTAAAAATTTATCACAACATAAACGAACACATAATAAAATTACATAA
Protein Sequence
MNTNLRLANFQKICRTCLIAKDNLQEIFSSLDLLKECTSIQIDMEDDFPKLICVECTGKLNTAHEFRKQCEQSQQVLLQLRTSNDSPVKLESDITDFQLQNEKTENVELIEIVIKTEPQPEESYNTNDDLASVHDLIKNFTSENKSVGVCKKQKIILESVNINLTKDGLPFNSDDQPVKKILKFENDYLIHEDHDYDTCIRSIDKSVDENKCNEKPSTLKTQRKLDVKEDSVTIKNGLSCPKCEKSFELNSDLEIHMLKHQEFDEYICPKCSKCFETVTKLKRHLSTHLVNKPHKCNVCNKSFNDVRRRNSHLRIHKRNEDNNCQTLDKNINEHLKNNGSYSCLQCSKCFELETDLEIHMLIHQKFDEFNCHMCSKSFENEIGLKHHFIRHMVYKPFKCNFCDKSYANSDDRNRHLRIHTGEKPHVCSTCGERFMESSKLSRHMKYHLGIKNFVCTVCSKSFTFSQELKRHMLMHTGEKPYLCTECGKSFRQLQSYKEHQITHSGERPYSCTECEKTFTLSKYLKWHMRSHTGEKPFVCKICEMAFTTARALVRHNRSHTGERPYSCDICKKTFKSSQEVTQHKRTHNKIPQFFLKQGDSPYWCDICGKTFKANKYLTRHKREAHVEGKPYSCDLCEKAFKYSKHLRAHKRTHDETRTCLIKKDNLQAIFRIVDLLKECTSIQIDMEDDLPKLICLECTNKLNTAFEFRKQCEVSQKILLQLRQFGETSVKLESNGSNVHLQNGKNENLELNEIYIKSEESFKNEINSDTSDENNKFDDVFNFVKVKQLTSIHEFVETKNILDVSKTQNINVESVDTNLSKDSLLSDFKDKDLDNRLKIEDENEEDIHENNDCDAGNSDDESLALRKNKCKKKSSKLKVKRELQVKQDTLTIKNGLSCPKCKKYFELETDLEIHMLKHKKFDEYICPKCSKSFETVTKLKRHLSTHLINKPYRCNFCNKSFIEARNRNRHLLVHKGDKDTSNQNSDESIALGKHKLFNIPTRDGLPCPQCEKFFELQTDLEIHLLKHKKFEEFVCPMCSKSFENEKSLKRHFDRHMIDKPYKCNVCDKSFVNSDDRNRHSRIHTGEKPYVCSTCGKRFTASNRLSRHMKYHIGIKNFVCTFCSKSFMFPRELRGHLRTHTGEKPYLCTECGESFSQLKGLKVHKINHTGERPFSCTECDKTFTINKYLKEHMRIHTGEKPHVCKICGVGYTSPGALVVHNRTHTGERPFPCDICEKTFKTSKNLSQHKRTHNKIT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-