Basic Information

Insect: Chrysoperla carnea
Gene Symbol: -
Assembly: GCA_905475395.1
Location: FR997754.1:2188354-2192127[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 24 8.9e-05 0.0019 18.9 3.8 1 23 100 122 100 122 0.98

2 24 0.00015 0.0032 18.2 3.8 1 23 127 149 127 149 0.98

3 24 5.6e-06 0.00012 22.7 1.1 1 23 155 177 155 177 0.98

4 24 1.3e-07 2.8e-06 27.8 1.2 1 23 183 205 183 205 0.98

5 24 9.5e-05 0.0021 18.8 6.7 1 23 211 233 211 233 0.98

6 24 4.5e-06 9.8e-05 23.0 0.7 1 23 239 261 239 261 0.98

7 24 0.081 1.8 9.6 1.7 1 23 267 289 267 289 0.97

8 24 2.5e-07 5.5e-06 26.9 2.0 1 23 309 331 309 331 0.98

9 24 0.0002 0.0043 17.8 2.4 1 23 337 360 337 360 0.97

10 24 4.1e-05 0.00088 20.0 1.8 1 23 366 388 366 388 0.98

11 24 0.0002 0.0043 17.8 1.1 1 23 394 416 394 416 0.97

12 24 0.00015 0.0033 18.2 0.5 2 23 423 444 422 444 0.96

13 24 1.2e-05 0.00026 21.6 1.8 1 23 471 493 471 493 0.98

14 24 2.9e-07 6.2e-06 26.8 1.6 1 23 499 521 499 521 0.98

15 24 2.5e-05 0.00054 20.6 1.0 1 23 527 549 527 549 0.98

16 24 5.8e-05 0.0012 19.5 1.9 1 23 555 577 555 577 0.98

17 24 8.4e-05 0.0018 19.0 1.9 1 23 643 665 643 665 0.98

18 24 4.7e-06 0.0001 22.9 0.7 1 23 671 693 671 693 0.98

19 24 2.9e-05 0.00062 20.5 0.6 1 23 699 721 699 721 0.98

20 24 5.8e-05 0.0012 19.5 1.9 1 23 727 749 727 749 0.98

21 24 1e-05 0.00022 21.8 2.4 1 23 808 830 808 830 0.98

22 24 7.6e-05 0.0016 19.1 4.1 1 23 836 858 836 858 0.98

23 24 4.9e-06 0.00011 22.9 0.7 1 23 864 886 864 886 0.98

24 24 1.9e-05 0.00042 21.0 2.4 1 23 892 914 892 914 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	24	8.9e-05	0.0019	18.9	3.8	1	23	100	122	100	122	0.98
2	24	0.00015	0.0032	18.2	3.8	1	23	127	149	127	149	0.98
3	24	5.6e-06	0.00012	22.7	1.1	1	23	155	177	155	177	0.98
4	24	1.3e-07	2.8e-06	27.8	1.2	1	23	183	205	183	205	0.98
5	24	9.5e-05	0.0021	18.8	6.7	1	23	211	233	211	233	0.98
6	24	4.5e-06	9.8e-05	23.0	0.7	1	23	239	261	239	261	0.98
7	24	0.081	1.8	9.6	1.7	1	23	267	289	267	289	0.97
8	24	2.5e-07	5.5e-06	26.9	2.0	1	23	309	331	309	331	0.98
9	24	0.0002	0.0043	17.8	2.4	1	23	337	360	337	360	0.97
10	24	4.1e-05	0.00088	20.0	1.8	1	23	366	388	366	388	0.98
11	24	0.0002	0.0043	17.8	1.1	1	23	394	416	394	416	0.97
12	24	0.00015	0.0033	18.2	0.5	2	23	423	444	422	444	0.96
13	24	1.2e-05	0.00026	21.6	1.8	1	23	471	493	471	493	0.98
14	24	2.9e-07	6.2e-06	26.8	1.6	1	23	499	521	499	521	0.98
15	24	2.5e-05	0.00054	20.6	1.0	1	23	527	549	527	549	0.98
16	24	5.8e-05	0.0012	19.5	1.9	1	23	555	577	555	577	0.98
17	24	8.4e-05	0.0018	19.0	1.9	1	23	643	665	643	665	0.98
18	24	4.7e-06	0.0001	22.9	0.7	1	23	671	693	671	693	0.98
19	24	2.9e-05	0.00062	20.5	0.6	1	23	699	721	699	721	0.98
20	24	5.8e-05	0.0012	19.5	1.9	1	23	727	749	727	749	0.98
21	24	1e-05	0.00022	21.8	2.4	1	23	808	830	808	830	0.98
22	24	7.6e-05	0.0016	19.1	4.1	1	23	836	858	836	858	0.98
23	24	4.9e-06	0.00011	22.9	0.7	1	23	864	886	864	886	0.98
24	24	1.9e-05	0.00042	21.0	2.4	1	23	892	914	892	914	0.97

Sequence Information

Coding Sequence: ATGGCAAATAGTTCATTTAAAGATGAAATTGATCCTTTATTGATCAATGAAAAAAACAATATTAAATGTGAACAAGATTTAAATAAACAAATACTAAACGAAAATGTTAAAGTGGAAGAAAGTGGTTTAGTGACACAAGTTTTAATTAAAGAAGAAATAGACTTGGGAAATTTTATAATTAAAGAAGAAAATGTTATCATGGAAAATCAACCAGTTTATAATGAAAATGAAAAGTTGGAACCCAATAAATCGGAAGAAAAATTAAATGAAGATAATTCAAAATCACTAGAAAACATTTTTCCATGTGATTTTTGTGGCAAAAAATTTAACAAGAAACGTAATTTACATAACCATGAACGAATTCATAAGGAAAAACCATATTCATGTGATTTTTGTAATAAAAAATTTTCATTTCAATCTAAATTAACGTTACATAAAAGAATTCATACCGAAGAAAAACCATTTTCATGTGAAACTTGTGGTAAATCATTTACTACGTCTCAAAGTTTAATTCAACATAATCGAATCCACACGGGTGAAAAACCATTTTCTTGTGAAATTTGTGATAAAAAATTTCGTGATCAAAGTAATTTAATTGTGCATAAACGAACTCATTCCGGTAAAAAACCATATTCTTGTGAAATTTGTAAGAAAAAATTTCGTCATAAAAATAGTTTGACTCAACATAAACGAAGACATACTGGTGAAAATCAATTTTCATGTGAAGTGTGTGATAAAACATTTTCTCGATTGTCCGGTTTAATTCAACATAAACGATTACATACAGGTGAAAAACCATTTTCTTGTAATATTTGTGATCGAAAATTTATGTGGCGTAATACTTTTATTGTACATAAACGATCTCATTCGGGTGAAAAACCATCTTCATGTGAAGTTTGTTCAAGTAATTCATCAAAAAAACGATTTTCTTGTGAAATTTGTGATAAAAAATTTCGTGATCGTAGTAATTTAATACAACATAAACGAACTCATACCGGGGAAAAACCATTTTCTTGTGATATTTGTAATAGAAAATTTCGTTTCGTAGATAATCTCAAAATACATCGTAAACGAACACATATTGGTGAAAAATCATTTTCATGTGAAGTGTGTGATAAAAATTTTAATCATCGTCAAGACTTAATTGAGCATAGAAGAATTCATACCGGGGAAAAACCATTTTCTTGTAGTATTTGTGATCGAAAATTTAGTTATCGAAGTGGTTACATTGTGCATAAACGCGCTCATATTAATGATAAATCATTATCATGTAAAGTTTGTGATAGAAAATTTACTGATTTACCCAGTTTAACGATTCATAGAAAAATTCACATCGAAGGCGACGAAGAAAATGGTTTGAACAAAGAAAAAAAGGTTAAAAACGCGTCAAAATATCTAAAAAATAAGAAATTTTCCTGTGAATTTTGTAATAAAATGTTTAGTCAACGAATTAATTTAATTGTGCATAAACGAACTCATTCAGGTGAAAAACCATTTTCTTGTAAAATCTGTGGTAAATCATTTTCTCAATCTCAAAATTTAAATATACATAATAGAACACATACCGGTGATAAACCATTTTCTTGTAAAATTTGTGGTAAATCATTTTCACAATCTCAACGTTTAATTCTACATAATCGAATTCATACGGGTGAAAAACCATTTTCTTGTGAAATTTGTGATAAAAAATTTCGTTATCCAGGTAATTTTAGTGAACATAAAAAAAGACATGCTAGTGAAAAATTAGTGAAAAACGAGATTATTGTAGAAGAAAATAAAGAAAAAAAAGAAAATAAAGAAAAATTAAATGTGGAGCAAATATTGATTAAAGAGGAAGCATTCGAAGAAAATAATACAATTGTAGCTAAAGATGAAACCAATAAATTGGAGGTTAAAACTGCTTCAAAATGTGAAAAAAATAAACAATTTTCCTGTGATTTTTGTAATAAATCATTCAAACTACGAATTTATTTAATTGTACATCAACGCACCCATACCGGTGAAAAACCATTTTCATGTGGAATTTGTGGTAAATCGTTTTCTCAGTCTCGATATTTAATTACACATAATCGTATTCACACTGGTGAAAAACCATTTTCTTGTGAAATTTGTGGTAAATCATTTTCACAATCTCAACGTTTAATTCTACATAATCGAATTCATACGGGTGAAAAACCATTTTCTTGTGAAATTTGTGATAAAAAATTTCGTTATCCAGGTAATTTTAGTGAACATAAAAAAAGACATACTAGTGAAAAATTAGTGAAAAACGAGATTATTGCAGAAGAAAATAAAGAAAAATTAAATGTGGAGCAAATATTGATTAAAGAGGAAGCATTTGAGGAAAATAATCCAATTACAGATGAAAATGAAACCACTAAAGAGGTTGGAACTGCTTCAAAATGTGAAAAAAATAAACAATTTTCCTGTGATTTTTGTAATAAATCATTCAAACTACGAACTAATTTAATTGTACATCAACGCACTCATACCGGTGAAAAACCATTTTCATGTGATTTTTGTGATAAAAAATTTCGCAGTCAATCTTGTTTAATTGTCCATAAACGAATTCATACCGGAGAAAAACCGTTTTCTTGTGGAATTTGTGGTAAAAAATTTTCACAACAAAGTGGATTATATCTACATAAAAGAGTGCATACGAGAGAAAAACCGTTTTTTTGTGAAGTTTGTGATAGAAAATTTACTGATTCACGTAGTTTAACGAAACATAAAAGAATTCACAGCCAAGGCGATGCAGTATTTGAAGAAGAAAATGATTTAATTAAAGAAGAATTACTTGAAATTAATGAAGACCCCCTTTTACTTGGATTAGATAATGAATAA
Protein Sequence: MANSSFKDEIDPLLINEKNNIKCEQDLNKQILNENVKVEESGLVTQVLIKEEIDLGNFIIKEENVIMENQPVYNENEKLEPNKSEEKLNEDNSKSLENIFPCDFCGKKFNKKRNLHNHERIHKEKPYSCDFCNKKFSFQSKLTLHKRIHTEEKPFSCETCGKSFTTSQSLIQHNRIHTGEKPFSCEICDKKFRDQSNLIVHKRTHSGKKPYSCEICKKKFRHKNSLTQHKRRHTGENQFSCEVCDKTFSRLSGLIQHKRLHTGEKPFSCNICDRKFMWRNTFIVHKRSHSGEKPSSCEVCSSNSSKKRFSCEICDKKFRDRSNLIQHKRTHTGEKPFSCDICNRKFRFVDNLKIHRKRTHIGEKSFSCEVCDKNFNHRQDLIEHRRIHTGEKPFSCSICDRKFSYRSGYIVHKRAHINDKSLSCKVCDRKFTDLPSLTIHRKIHIEGDEENGLNKEKKVKNASKYLKNKKFSCEFCNKMFSQRINLIVHKRTHSGEKPFSCKICGKSFSQSQNLNIHNRTHTGDKPFSCKICGKSFSQSQRLILHNRIHTGEKPFSCEICDKKFRYPGNFSEHKKRHASEKLVKNEIIVEENKEKKENKEKLNVEQILIKEEAFEENNTIVAKDETNKLEVKTASKCEKNKQFSCDFCNKSFKLRIYLIVHQRTHTGEKPFSCGICGKSFSQSRYLITHNRIHTGEKPFSCEICGKSFSQSQRLILHNRIHTGEKPFSCEICDKKFRYPGNFSEHKKRHTSEKLVKNEIIAEENKEKLNVEQILIKEEAFEENNPITDENETTKEVGTASKCEKNKQFSCDFCNKSFKLRTNLIVHQRTHTGEKPFSCDFCDKKFRSQSCLIVHKRIHTGEKPFSCGICGKKFSQQSGLYLHKRVHTREKPFFCEVCDRKFTDSRSLTKHKRIHSQGDAVFEEENDLIKEELLEINEDPLLLGLDNE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -