Ccar005694.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Chrysoperla carnea
Gene Symbol
-
Assembly
GCA_905475395.1
Location
FR997756.1:7283865-7290706[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 24 0.014 0.3 12.0 3.8 1 23 38 60 38 60 0.98
2 24 9.3e-05 0.002 18.9 4.8 1 23 66 88 66 88 0.98
3 24 7.1e-05 0.0015 19.2 3.7 1 23 94 116 94 116 0.98
4 24 1.8e-05 0.00038 21.1 0.1 1 23 122 144 122 144 0.98
5 24 6.8e-07 1.5e-05 25.6 1.2 1 23 150 172 150 172 0.98
6 24 0.00044 0.0095 16.7 0.6 1 23 178 201 178 201 0.96
7 24 4.4e-05 0.00095 19.9 0.4 1 23 207 229 207 229 0.99
8 24 6.7e-08 1.5e-06 28.7 1.8 1 23 235 257 235 257 0.98
9 24 2.5e-08 5.4e-07 30.1 1.8 1 23 263 285 263 285 0.98
10 24 1.4e-06 3e-05 24.6 0.9 1 23 291 313 291 313 0.99
11 24 0.0092 0.2 12.6 4.4 1 23 319 341 319 341 0.98
12 24 3.2e-06 6.8e-05 23.5 0.5 1 23 380 402 380 402 0.98
13 24 7.7e-06 0.00017 22.3 1.3 1 23 408 430 408 430 0.98
14 24 5.3e-06 0.00012 22.8 1.1 1 23 436 458 436 458 0.98
15 24 4.3e-08 9.2e-07 29.4 1.8 1 23 654 676 654 676 0.98
16 24 6.8e-07 1.5e-05 25.6 3.4 1 23 682 704 682 704 0.98
17 24 0.48 10 7.2 4.9 1 23 710 732 710 732 0.97
18 24 0.00015 0.0032 18.2 2.0 2 23 754 775 754 775 0.96
19 24 6.3e-05 0.0014 19.4 2.8 1 23 804 826 804 826 0.97
20 24 0.0097 0.21 12.5 5.3 1 23 832 854 832 854 0.97
21 24 1.3e-06 2.8e-05 24.7 0.8 1 23 860 882 860 882 0.98
22 24 1.9e-07 4.2e-06 27.3 1.1 1 23 888 910 888 910 0.98
23 24 3e-05 0.00064 20.4 1.8 1 23 916 938 916 938 0.97
24 24 4.6e-06 0.0001 23.0 1.6 1 23 944 966 944 966 0.98

Sequence Information

Coding Sequence
ATGGCTGATTGTTTATTCTATAATACTAATAGTTTGGTGATGATCAAAAGTAAAAATATTAAAATTGAAGATAAAAAAGAATTTGAAATTAAACAAAAAACAATTGAATCGTTTAGCTGTGATGTTTGTTGCAAAATATTTAGCTCAAAAAAAACTTTAATAGTACATAAAAAAACTCATAGTGATGAAAAATTATATTCATGTGACCATTGTGAGAAAAAATTTACGTTTCGAAACAACCTAGTCCGGCATAAACGAATTCATACGGGTGAACAACGTTTTTCGTGCGATATTTGTAATAAAAAGTTTATCCATCAAAGTAGCTTACGTTATCATAAAAATGTTCATACTGGTGAAAAAAATTTTTCCTGTGATATTTGTGGTCAAACATTTACTCAGCAAGGTAGTTTAGGAAATCATTTATTAATTCATACCGGAGAAAAACCATTTTCATGCGATGTTTGTGATAGAAGATTTAATCGACAAAGTAATTTGGTTGCACACAAGAGAACGCATAGCGGGGAGAAACCATATTCGTGCGATGTTTGCGACAAAAAATTTGGATTTCAAGGCAATTTAATAGAACACAAGATAAGATTTCACACCATCGAAAAACCGTTTAAATGCGATATTTGTAATAAAGCATTTCCAATGCAACGGAACCTCGATGTACATAAACGAATTCATACTGGAGAAAGATCATATTCATGTGATATCTGTGATAAAACATTTACGCAACAAAGCAGTTTAACTAGACATAAACGAATTCATACTGGAAGAAAATATTTCTCATGTCATGTTTGTGGGAAAACATTTAATCGACAAAGTAATTTAATGGTGCATATTAGGATTCATAGTGGAGAAAAACCGTATTCATGTGATGTTTGTGACAAAGCATTTACGTTTCAAAGTAATTTGGTGGATCATAAACGAACTCATACTGGAGAAAGACCGTATTCATGTGATATATGTGAGAAAAAATTTACATGTAAAACCACTTTAGTTAAACATAAACGTGTTCACACAAGAAAACAAACTGATTTTATCCATCAAAGTAGTCATCATATTGGAGAAAATAATTCTTTTGAAAAATCAATTATTCAACAAAACAATTTAAATAAAATTGGAGTAAAACTATTTTCATGTAATATTTGTGGAAGGATATTTAATCGACGAAATAATTTAGTTGCACATAAACGAATTCATAGTGGAGAAAAACCATTCTCATGTGATGTATGCGATAAAAAATTTACATTTCAAGGTAATTTAGTCGAGCATAAACGAACACATACAGGTGAAAAACTATTTAAATGTGATGTTTGTAATAAGGCGTTTACTCAACAAAGTACGTTGGGAAATCATAAACGAATTCATACGAAACAAGGACCATATTCACGTGATGTTTGTGATAAAACTGTTCAATCTAATTTCTATGAACACAAGCAATTGGATAATATAGAAAATTCTTTTTCAAATGGAAATGATAATTTACAAGATCACACACATACACTAGAAAGTTCATTTATTCATGATGAAACATATACCAATCACGATACTTCATTGAATCATACAGAAGATAAACCACTTTCAAGCGATGTTTGTAATGTAATTTTTACCGCTGTTAATCATTTATTCGATCATACAACAAAAAATCGATTTCCAAAAGAAGAAACATTAAAATTAAACAATTATGTAATAGAAAAACCATTCTCAAGCGATAAAGCATTTCAAATTGACAATCCTGTAGGGGAAAAACGTTTTTCAAGTGATGAAATATTAAATAACAGCAATTCTGAAGTCGAAGAATCTTTTTTAAATGATAAAACATATAAAACCGAAAATTTTTCAACAAAAAAACCATCTTCAAGTGATCAATCATTTCAAATTGACAATCCTGTGACAAAAAAACCTTCAAATGATGAAAAATTTCCGACCGAAAATTATACAATAGAAAAATCATATTCGTGTGATCTATGTGGTAAAACATTTACTCAATCAAGCAATTTAACGAGACATAAACGAATTCACACCGGAGAGAAAGTCTTTTCATGTCATGTTTGTGGGAAAACATTTAATCGTTTACATAACTTAATGGTGCATATTAGGATTCATAGTGGAGAAAAACCATATTCTTGTGATGTTTGTGACAGAACATTTACTTGTAAAACCACTTCTGTTAGACATAGGCGAACTCACTCTAGAGAAAAAAGTATTTCTAATGCTTCTGATGAGTCGTTTTCAAAGGCTATGCGAAAAAATTCATGCGATGTTTGTAATAAAACATTTACTTTGAAGAGTAGCTTAATTAAACACAAATTAAAACATGGCCATGAAGATTTATCTCAACAAATTTTAACCACGCAGATCAATACAGACAATTACAAAGCAATTCCTACGAAAAAATTATTACATTCATGTGATGAATGTGGCAAAAAATTTACTTTAAAAAATAGTTTAGTAAGGCATAAACGAATTCATGCAGGAATCAAACTCTTCTCATGTGAAGTTTGTGATAAAAAATTTATCCATCGAACCAGTTTACACTATCATAAAAGTGTTCATACTGGAGAAAAGCCGTTCTCATGTGATGTTTGTGGTAAAACATTTACACAACAGAGTAGTTTAGGTAATCACAAACGAATTCATACAGGAGAAAAACCATTCTCGTGTGATGTTTGTGGTAAGAAATTCAATCGATCGAGTAATTTAGTTGCACATAAAAGAACACATACTGGAGAAAAACCTCATTCGTGTGATGTCTGTGATAAAAAATTTACATTTCAAGGTAATCTAATTGAACATAAACGAATACATACCGGTGAAAAACTTTTTACCTGTGGAATTTGTGATAAAACTTTTACTCATCAAAGCAGTTTAGCTGGCCATAAAAGAATTCATATCGAAGAAAAATCCAATCATATATCAATATACCAATCATGA
Protein Sequence
MADCLFYNTNSLVMIKSKNIKIEDKKEFEIKQKTIESFSCDVCCKIFSSKKTLIVHKKTHSDEKLYSCDHCEKKFTFRNNLVRHKRIHTGEQRFSCDICNKKFIHQSSLRYHKNVHTGEKNFSCDICGQTFTQQGSLGNHLLIHTGEKPFSCDVCDRRFNRQSNLVAHKRTHSGEKPYSCDVCDKKFGFQGNLIEHKIRFHTIEKPFKCDICNKAFPMQRNLDVHKRIHTGERSYSCDICDKTFTQQSSLTRHKRIHTGRKYFSCHVCGKTFNRQSNLMVHIRIHSGEKPYSCDVCDKAFTFQSNLVDHKRTHTGERPYSCDICEKKFTCKTTLVKHKRVHTRKQTDFIHQSSHHIGENNSFEKSIIQQNNLNKIGVKLFSCNICGRIFNRRNNLVAHKRIHSGEKPFSCDVCDKKFTFQGNLVEHKRTHTGEKLFKCDVCNKAFTQQSTLGNHKRIHTKQGPYSRDVCDKTVQSNFYEHKQLDNIENSFSNGNDNLQDHTHTLESSFIHDETYTNHDTSLNHTEDKPLSSDVCNVIFTAVNHLFDHTTKNRFPKEETLKLNNYVIEKPFSSDKAFQIDNPVGEKRFSSDEILNNSNSEVEESFLNDKTYKTENFSTKKPSSSDQSFQIDNPVTKKPSNDEKFPTENYTIEKSYSCDLCGKTFTQSSNLTRHKRIHTGEKVFSCHVCGKTFNRLHNLMVHIRIHSGEKPYSCDVCDRTFTCKTTSVRHRRTHSREKSISNASDESFSKAMRKNSCDVCNKTFTLKSSLIKHKLKHGHEDLSQQILTTQINTDNYKAIPTKKLLHSCDECGKKFTLKNSLVRHKRIHAGIKLFSCEVCDKKFIHRTSLHYHKSVHTGEKPFSCDVCGKTFTQQSSLGNHKRIHTGEKPFSCDVCGKKFNRSSNLVAHKRTHTGEKPHSCDVCDKKFTFQGNLIEHKRIHTGEKLFTCGICDKTFTHQSSLAGHKRIHIEEKSNHISIYQS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-