Ccar018940.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Chrysoperla carnea
Gene Symbol
-
Assembly
GCA_905475395.1
Location
FR997754.1:1999449-2005452[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 26 7.5e-06 0.00016 22.3 1.2 1 23 43 65 43 65 0.95
2 26 0.001 0.022 15.6 6.3 1 23 71 93 71 93 0.98
3 26 1.9e-05 0.00042 21.0 0.8 1 23 99 121 99 121 0.97
4 26 0.00052 0.011 16.5 1.7 1 23 127 149 127 149 0.97
5 26 6.3e-06 0.00014 22.5 3.4 1 23 155 177 155 177 0.98
6 26 0.00029 0.0062 17.3 0.7 1 23 183 205 183 205 0.98
7 26 0.0011 0.023 15.5 1.8 1 21 230 250 230 251 0.94
8 26 4.2e-05 0.0009 19.9 1.5 1 23 256 279 256 279 0.95
9 26 0.13 2.9 8.9 1.8 1 23 285 307 285 307 0.97
10 26 1.9e-05 0.00041 21.0 4.7 1 23 354 376 354 376 0.99
11 26 0.00025 0.0053 17.5 0.4 1 23 382 404 382 404 0.92
12 26 0.00052 0.011 16.5 0.5 1 23 410 432 410 432 0.98
13 26 0.00022 0.0047 17.7 0.5 1 23 438 460 438 460 0.98
14 26 2.5e-05 0.00053 20.7 0.4 1 21 466 486 466 487 0.95
15 26 0.00027 0.0058 17.4 0.3 1 23 612 634 612 634 0.98
16 26 1.1e-06 2.5e-05 24.9 2.2 1 23 640 662 640 662 0.98
17 26 0.0016 0.036 14.9 0.8 1 23 668 690 668 690 0.95
18 26 3.3e-07 7.1e-06 26.6 0.6 1 23 708 730 708 730 0.98
19 26 1.2e-06 2.5e-05 24.8 0.3 1 23 752 774 752 774 0.98
20 26 3.1e-06 6.7e-05 23.5 0.9 3 23 781 801 779 801 0.96
21 26 0.0012 0.026 15.4 4.4 1 23 807 829 807 829 0.97
22 26 0.00085 0.018 15.8 3.5 1 23 835 858 835 858 0.97
23 26 1.3e-05 0.00028 21.5 0.4 1 23 864 886 864 886 0.98
24 26 1.6e-06 3.5e-05 24.4 2.3 1 23 892 914 892 914 0.98
25 26 1.4e-06 3e-05 24.6 1.4 1 23 919 941 919 941 0.99
26 26 0.0005 0.011 16.5 0.8 1 23 947 969 947 969 0.97

Sequence Information

Coding Sequence
ATGACAGAACGTACATCTGCTGATGAGAAAAACTATCAGCTGCTAACCAAAGATAATAATCTTGAATTACCATTAAAAACAGAAATGATAATTCAAGATAAAATCATAAAAACTAGTGAAAAATCATTTTTATGTGATTTATGTGGCAAAACATTTTCAACGCAAAGTAATGTACGAATGCATAAACGTATACATACCGGGGAAAAACCATTTTCATGTGACGTATGCGAGAAAACTTTCGTGTATCGACATCATTTACTTACGCACAAACGTAAACATACCGGGGAAAGACCTTTCGCGTGTGATGTCTGTGGAAAAACATTTACTTTAAGCAGCCATTTAATTGGTCATAAACGTATTCATACCGGTGAAAAACCATTCGCATGTAAATTTTGTGCGAAAAGATTCACTTTACAAAATAATCTAACGCAACATTTACTCACCCATACCGGAATTAAACGTTTCGAATGTGAAATCTGTGATAAACGATTCGCACAAAAAAAGAATTTAGATCATCACAAACGAACACATACCGGTGAAAAACCATTTACGTGTGAAATTTGTGCGAAAAAATTCCCATATCTTGGTAGTTTAAATAAACATAAATTAACGCATACCGTGGAACAACGAATACGTAAGAAACCAACGGGACGTAAACCAACGTTTGGAAAAAAATTATCGAAATTATTCGCATGTGATTTATGTAAAAAACGTTTTACATCGGAAAAACATTTAGCACGGCATAAAAAACTTGAAGCACAGAAATATTTATGTAAAGTGTGTTTGAAAACATTTAAACAAAAAGATAATTTAGATTCGCACATGCGATTACAGCATGTGAAAAATAAACCGTATTCGTGTGATGTTTGTAGTGCGAAATTTTTTAATCAAATCGGTTTATGTGAACATAAAAAGGAACATGGAATTTTCATCGAAAATAAACAAATTAAACAAGAAAATAAAGGGAAACCGTGTTTTTCTTGGGATATTTATAATGAAAATTACCGACCTGTTGAAAATAATTTAAATAAAGTGAGAAAACCGATGGGAAATAGTTCATTTCAATGTGATTTTTGTAATAAATTTTTCACAACGAAAAGACATTTAGTTGTACACCAACGGATCCATTTAGGAATTCGACCGTTTTCATGTGATTATTGTGAGAAAACATTTACGCAAAAAGCTGGTTTAGATAATCATATACCAACGCATACAGGTGAAAAACCATTTTCATGTGATCTTTGTGCGAAGAAATTTGCTCGACAAACGGCATTATCGATACATAAACGAGTTCATACCGGTGAACGGCCGTATGTTTGTGATTTTTGTGAGAAAGCTTTTCGGCAAAAAGGTGCTTTGGATACGCATAAAAAAATTCATAGCGGTGAAAAACCATATGTGTGTGAGATTTGTAATAAAACATTTATACGGAAAACGAGTTTATTGAAACATACAAAGGCTAGCTGTGAAAAGTATCGATTGAAGCAAACAAAATTGGAAAATATGAAAATTGAAGATTCAAGTGGTGATGCTGAAGATAATTTTAATGTGGATGATTACGTTGAAGAAGCTTTTAGTGAAGAGGAACCTACAATCAGTGTCAAAGATCCAATTGCTGAGGAAAATACAACCGGAAACTGCAATTATTCTATGTTAGAAGAAACGAAGACAGAACTTGTTGAACAAAAACCAATCTATAACGAAGAGAAACCTGCAGAAATATTCGATAAAACGAAACAAGAAAATGTTTTAATTGATCAAAAAGAAGAAAAACCAACGGAAGTATTCACGAAACCTATTTCCGTTAAACCGAAACGAGTCAAAGATAGACCATTCCCTTGTGATATATGCGATAAAAAATTTATTCTTTTAAGCAGTTTACTAATTCATAAAAAAATGCATACCGAACCAAAACGTTTCTCGTGTGATTATTGTGATAAAACTTTTACCCAACAAGTTAGCTTCAATAATCATCAACGGATTCATACCGGCGAAAAACCGTTCTTATGTGACATTTGTGGTGCAAGTTTTGGCTACCAAATTCATTTAATCAATCACAAACAAAAACATTTAGATGATAAAATCCCACTTCAAACATTTACCAATCAATATATTCAATATTTTCCATGTGACGTGTGCGGGAAAGTTTTCACTCAACAAAGTAAATTAACGAAACATTCTCGAATTCATTCAAAAAATTTCCCTAGTAAAATATTAACCAATCAAAGAGTTCAACAAGTTTCGAGTAAAACCTTTCCTTGTGATATTTGTGGTAAAGTATTTACGACTCAAAGTAATATGGTTAGCCATAAAAAAGTACATAATCCAGAAATACTCGCTTGCGATCAATGTGATAAAACGTTCACTCGGGAAAGTAATTTACGTGTACATAAAAGATTACATACCGGGGAAAAACCGTTCGCTTGTGATTTATGTGATAAAACATTTAGCCATCGAAGTACATTCGTTTATCACAAACAAAAACATTTAGGTGAAAAACCATTTTCCTGTGATATTTGTAACAAAACATTCATGCATGCGGTTCATTTGGATCGACACAATCGCAGTTTACACACCAAAGAGAAGCCATTCGAATGTGATATTTGTAAGAAAACATTTATCGATAAAGGTGCGTTAGTTTCGCATAAACGAAGTCACAGCGATGAACGTACGTTTGTTTGTGATTTTTGTGAGAAACGATTTAAATCGAGCAGTAATTTACAAAATCATCGACGTATCCATATTGGGAAATTTTATTCGTGTGATTTATGTGATAAATCGTTTACACAGAATGTTGCATTAAAGAATCATAAACGAACTCATACGAAAGAAAAACCATTTTCGTGTGATGTTTGTGATGAAAAGTTTGCTCGACGTGATGTTTTAAAGAAACATAAATTAAATCATACTGAATAA
Protein Sequence
MTERTSADEKNYQLLTKDNNLELPLKTEMIIQDKIIKTSEKSFLCDLCGKTFSTQSNVRMHKRIHTGEKPFSCDVCEKTFVYRHHLLTHKRKHTGERPFACDVCGKTFTLSSHLIGHKRIHTGEKPFACKFCAKRFTLQNNLTQHLLTHTGIKRFECEICDKRFAQKKNLDHHKRTHTGEKPFTCEICAKKFPYLGSLNKHKLTHTVEQRIRKKPTGRKPTFGKKLSKLFACDLCKKRFTSEKHLARHKKLEAQKYLCKVCLKTFKQKDNLDSHMRLQHVKNKPYSCDVCSAKFFNQIGLCEHKKEHGIFIENKQIKQENKGKPCFSWDIYNENYRPVENNLNKVRKPMGNSSFQCDFCNKFFTTKRHLVVHQRIHLGIRPFSCDYCEKTFTQKAGLDNHIPTHTGEKPFSCDLCAKKFARQTALSIHKRVHTGERPYVCDFCEKAFRQKGALDTHKKIHSGEKPYVCEICNKTFIRKTSLLKHTKASCEKYRLKQTKLENMKIEDSSGDAEDNFNVDDYVEEAFSEEEPTISVKDPIAEENTTGNCNYSMLEETKTELVEQKPIYNEEKPAEIFDKTKQENVLIDQKEEKPTEVFTKPISVKPKRVKDRPFPCDICDKKFILLSSLLIHKKMHTEPKRFSCDYCDKTFTQQVSFNNHQRIHTGEKPFLCDICGASFGYQIHLINHKQKHLDDKIPLQTFTNQYIQYFPCDVCGKVFTQQSKLTKHSRIHSKNFPSKILTNQRVQQVSSKTFPCDICGKVFTTQSNMVSHKKVHNPEILACDQCDKTFTRESNLRVHKRLHTGEKPFACDLCDKTFSHRSTFVYHKQKHLGEKPFSCDICNKTFMHAVHLDRHNRSLHTKEKPFECDICKKTFIDKGALVSHKRSHSDERTFVCDFCEKRFKSSSNLQNHRRIHIGKFYSCDLCDKSFTQNVALKNHKRTHTKEKPFSCDVCDEKFARRDVLKKHKLNHTE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-