Ccar023053.1
Basic Information
- Insect
- Chrysoperla carnea
- Gene Symbol
- -
- Assembly
- GCA_905475395.1
- Location
- FR997754.1:4943011-4945707[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 28 0.054 1.2 10.2 5.5 1 23 113 135 113 135 0.97 2 28 9.3e-06 0.0002 22.0 3.1 1 23 141 163 141 163 0.97 3 28 6.2e-06 0.00013 22.5 1.4 1 23 169 191 169 191 0.97 4 28 1.1e-05 0.00025 21.7 1.3 1 20 197 216 197 219 0.94 5 28 0.23 5 8.2 3.8 2 23 226 247 225 247 0.95 6 28 0.11 2.3 9.2 4.6 1 23 253 275 253 275 0.97 7 28 5.1e-06 0.00011 22.8 1.6 1 23 281 303 281 303 0.95 8 28 1.3e-05 0.00028 21.6 0.6 2 23 310 331 309 331 0.96 9 28 2.5e-05 0.00054 20.6 0.9 1 20 337 356 337 359 0.93 10 28 0.00064 0.014 16.2 1.0 1 23 365 387 365 387 0.97 11 28 0.11 2.3 9.2 4.6 1 23 393 415 393 415 0.97 12 28 1.1e-05 0.00023 21.8 3.4 1 23 421 443 421 443 0.95 13 28 1e-05 0.00022 21.9 1.2 2 23 450 471 449 471 0.96 14 28 8.5e-06 0.00018 22.1 1.1 2 23 478 499 477 499 0.96 15 28 4.4e-05 0.00095 19.9 3.2 2 23 506 527 505 527 0.96 16 28 4.1e-06 8.9e-05 23.1 1.3 1 23 533 555 533 555 0.95 17 28 7.3e-06 0.00016 22.3 2.1 1 23 561 583 561 583 0.97 18 28 4.3e-05 0.00093 19.9 3.5 2 23 590 611 589 611 0.95 19 28 8.5e-06 0.00018 22.1 1.1 2 23 618 639 617 639 0.96 20 28 4.4e-05 0.00095 19.9 3.2 2 23 646 667 645 667 0.96 21 28 4.1e-06 8.9e-05 23.1 1.3 1 23 673 695 673 695 0.95 22 28 7.3e-06 0.00016 22.3 2.1 1 23 701 723 701 723 0.97 23 28 4.3e-05 0.00093 19.9 3.5 2 23 730 751 729 751 0.95 24 28 8.5e-06 0.00018 22.1 1.1 2 23 758 779 757 779 0.96 25 28 6.8e-06 0.00015 22.4 3.0 1 23 785 807 785 807 0.97 26 28 3.4e-05 0.00073 20.2 4.3 1 23 813 835 813 835 0.97 27 28 4.1e-06 8.9e-05 23.1 1.3 1 23 841 863 841 863 0.95 28 28 6.8e-06 0.00015 22.4 3.0 1 23 869 891 869 891 0.97
Sequence Information
- Coding Sequence
- ATGGCAAATAATTCATTTGTTAATAAAATTAATCATTTGCTTATCAATAAAGAAAATAATAAACTTGAAAAAGAACTAAATACAGAAATAATTATTAAAAGTGAAACATGTGACAATAATGTTGTAATGGAAGTTGGACAAATTAAAAATGTAATCCCAGAAGAAGAAGCCAGCAATAATATTGATAATGTTATAAGTGTAAAACATGAACCTGTGAGTGATGAAAGTGATAAACATTTGTACACAATTAATTATGAAAACATTAAACTTGAAAAAGAATTACATACAGAACTAATTATTAAAGATGAAACTGTGTTTGTGTTAGAAGAAAAAACATTTTCATGTGATATGTGTAATAAAAAATTTACTTGGCAATGTCATTTAGTTCGACATAAACTGGTTCATAGTGGAGAAAAGCCATTTTCATGTACTATTTGTAATAAAAGATTTTCCCAGAAAGGTCATTTAGTTCGACATAAACTGATTCATAGTGGAAAAAAACTATTTTCGTGTGGTATGTGTAATAAAAAATTTACTCGGCAAAGTGATTTAGTTCGACATAAACTGATTCATAGTGGAAAAGAACCATTTTCATGTGATATGTGCAATAAAAGGTTTACTCGGCAAAGTGATTTAAATCGACATAAACCGATTCATAGTGGAGAAAAACCATTATCATGTGATATGTGTAATAAAAAATTTATTTGGCAATGTCATTTAGTTCGACATAAACTGATTCATAGTGGAAAAAAACTATTTTCATGTGATATGTGTAATAAAAAATTTATTTGGCAATGTCATTTAGTTCGACATAAACTGATTCATAGTGGAAAAAAGCCATTTTTATGTAATATTTGTAATAAAAGATTTTCCCAGAAAAGTCAGTTAGTTCGACATAAATTGGTTCATAGTGGAGAAAAACCATTATCATGTGATATGTGTAATAAAATATTTACTCGGCAAAGTGATTTAGTTCGACATAAACTGATTCATAGTGGAAAAGAACCATTTTCATGTGATATGTGCAATAAAAGATTTACTCGGCAAAGTGATTTAGTTCGACATAAACCGATTCATAGTGGAGAAAAACTATTTTCATGTGATATGTGTAATAAAAAATTTACTTGGCAAAGTGATTTAGTTCGACATAAACTGATTCATAGTGGAAAAAAATTATTTTCATGTGATATGTGTAATAAAAAATTTATTTGGCAATGTCATTTAGTTCGACATAAACTGATTCATAGTGGAAAAAAGGCATTTTTATGTAATATTTGTAATAAAAGATTTTCCCAGAAAAGTCATTTAGTTCGACATAAATTGGTTCATAGTGGAGAAAAACCATTATCATGTGATATGTGTAATAAAAAATTTACTCGGCAAAGTGATTTAGTTCGACATAAACTGATTCATAGTGGAGAAAAACCATTATCATGTGATATGTGTAATAAAAGATTTACTCGGCAAAGTGATTTAGTTCGACATAAACTGATTCATAGTGGAGAAAAACCATTATCATGTGATATGTGTAATAAAAAATTTACTCGGCATAGTAATTTAGTTCGACATAAACTGATTCATAGTGGAGAAAAGCCATTTTTATGTAATATTTGTAATAAAAGATTTACTCGGCAAAGTGATTTAGTTCGACATAAACTGATTCATAGTGGAGAAAGTCCATTTTCATGTAATATTTGTAATAAAATATTTTCCCAGAAAGGTCATTTAGTTCGACATAAACTGATTCATAGTGTAAAAAAACTATGTTCATGTGATATGTGTAATAAAAAATTTACTCGGCAAAGTGATTTAGTTCGACATAAACTGATTCATAGTGGAGAAAAACCATTATCATGTGATATGTGTAATAAAAGATTTACTCGGCAAAGTGATTTAGTTCGACATAAACTGATTCATAGTGGAGAAAAACCATTATCATGTGATATGTGTAATAAAAAATTTACTCGGCATAGTAATTTAGTTCGACATAAACTGATTCATAGTGGAGAAAAGCCATTTTTATGTAATATTTGTAATAAAAGATTTACTCGGCAAAGTGATTTAGTTCGACATAAACTGATTCATAGTGGAGAAAGTCCATTTTCATGTAATATTTGTAATAAAATATTTTCCCAGAAAGGTCATTTAGTTCGACATAAACTGATTCATAGTGTAAAAAAACTATGTTCATGTGATATGTGTAATAAAAAATTTACTCGGCAAAGTGATTTAGTTCGACATAAACTGATTCATAGTGGAGAAAAACCATTATCATGTGATATGTGTAATAAAAGATTTACTCGGCAAAGTGATTTAGTTCGACATAAACTGATTCATAGTGGAGAAAAACTATTTTCATGTAATATTTGTAATAAAAGATTTTCCCAGAAAGGTCATTTAGTTCGACATAAACTGATTCATAGTGGAGAAAAACTATTTTCATGTGATACGTGTAATAAAAAATTTACTCGGCATAGTAATTTAGTTCGACATAAACTGATTCATAGTGGAGAAAAGCCATTTTTATGTAATATTTGTAATAAAAGATTTACTCGGCAAAGTGATTTAGTTCGACATAAACTGATTCATAGTGGAGAAAATCCATTTTCATGTAATATTTGTAATAAAAGATTTTCCCAGAAAGGTCATTTAGTTCGACATAAATTGATTCATAGTGGAGAAAAACCATTATCATGA
- Protein Sequence
- MANNSFVNKINHLLINKENNKLEKELNTEIIIKSETCDNNVVMEVGQIKNVIPEEEASNNIDNVISVKHEPVSDESDKHLYTINYENIKLEKELHTELIIKDETVFVLEEKTFSCDMCNKKFTWQCHLVRHKLVHSGEKPFSCTICNKRFSQKGHLVRHKLIHSGKKLFSCGMCNKKFTRQSDLVRHKLIHSGKEPFSCDMCNKRFTRQSDLNRHKPIHSGEKPLSCDMCNKKFIWQCHLVRHKLIHSGKKLFSCDMCNKKFIWQCHLVRHKLIHSGKKPFLCNICNKRFSQKSQLVRHKLVHSGEKPLSCDMCNKIFTRQSDLVRHKLIHSGKEPFSCDMCNKRFTRQSDLVRHKPIHSGEKLFSCDMCNKKFTWQSDLVRHKLIHSGKKLFSCDMCNKKFIWQCHLVRHKLIHSGKKAFLCNICNKRFSQKSHLVRHKLVHSGEKPLSCDMCNKKFTRQSDLVRHKLIHSGEKPLSCDMCNKRFTRQSDLVRHKLIHSGEKPLSCDMCNKKFTRHSNLVRHKLIHSGEKPFLCNICNKRFTRQSDLVRHKLIHSGESPFSCNICNKIFSQKGHLVRHKLIHSVKKLCSCDMCNKKFTRQSDLVRHKLIHSGEKPLSCDMCNKRFTRQSDLVRHKLIHSGEKPLSCDMCNKKFTRHSNLVRHKLIHSGEKPFLCNICNKRFTRQSDLVRHKLIHSGESPFSCNICNKIFSQKGHLVRHKLIHSVKKLCSCDMCNKKFTRQSDLVRHKLIHSGEKPLSCDMCNKRFTRQSDLVRHKLIHSGEKLFSCNICNKRFSQKGHLVRHKLIHSGEKLFSCDTCNKKFTRHSNLVRHKLIHSGEKPFLCNICNKRFTRQSDLVRHKLIHSGENPFSCNICNKRFSQKGHLVRHKLIHSGEKPLS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -