Ccar015645.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Chrysoperla carnea
Gene Symbol
-
Assembly
GCA_905475395.1
Location
FR997758.1:44263864-44269078[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 28 6.7e-05 0.0014 19.3 0.9 1 23 124 146 124 146 0.97
2 28 0.00013 0.0028 18.4 2.2 1 20 152 171 152 174 0.93
3 28 6.5e-06 0.00014 22.5 0.1 2 23 181 202 180 202 0.97
4 28 0.0062 0.13 13.1 0.1 1 23 208 230 208 230 0.97
5 28 6.1e-05 0.0013 19.4 1.1 1 23 246 268 246 268 0.97
6 28 0.00043 0.0093 16.8 1.3 1 23 274 296 274 296 0.97
7 28 1.3e-05 0.00029 21.5 1.1 2 23 308 329 307 329 0.97
8 28 1e-05 0.00022 21.9 0.9 1 23 335 357 335 357 0.98
9 28 6.9e-08 1.5e-06 28.7 1.2 1 23 363 385 363 385 0.99
10 28 0.038 0.81 10.6 7.6 1 23 391 413 391 413 0.98
11 28 0.00011 0.0024 18.6 0.9 1 23 419 441 419 441 0.97
12 28 5e-05 0.0011 19.7 0.3 2 23 448 469 447 469 0.97
13 28 4.8e-06 0.0001 22.9 3.7 1 23 475 497 475 497 0.97
14 28 6.7e-06 0.00014 22.4 1.0 1 23 503 525 503 525 0.98
15 28 1.6e-06 3.5e-05 24.4 0.8 1 23 531 553 531 553 0.98
16 28 0.0016 0.035 15.0 1.7 1 23 559 581 559 581 0.98
17 28 0.0052 0.11 13.4 3.2 1 23 595 617 595 617 0.98
18 28 1.3e-05 0.00027 21.6 1.5 2 23 624 645 623 645 0.96
19 28 1e-05 0.00022 21.9 3.2 1 23 651 673 651 673 0.98
20 28 8.2e-06 0.00018 22.2 1.5 1 23 679 701 679 701 0.98
21 28 2.2e-07 4.7e-06 27.1 4.4 1 23 707 729 707 729 0.98
22 28 8.1e-05 0.0017 19.0 0.5 1 23 735 757 735 757 0.98
23 28 1.3e-06 2.9e-05 24.7 1.3 1 23 763 785 763 785 0.98
24 28 2.4e-05 0.00051 20.7 1.8 1 23 791 813 791 813 0.97
25 28 4.6e-05 0.00099 19.8 3.2 1 23 819 841 819 841 0.97
26 28 1.2e-07 2.6e-06 28.0 1.3 1 23 847 869 847 869 0.98
27 28 0.00034 0.0073 17.1 0.3 2 23 878 900 877 900 0.95
28 28 5.3e-05 0.0012 19.6 0.5 2 23 912 933 911 933 0.97

Sequence Information

Coding Sequence
ATGTCAGATTATCCATTGTGTCCTCCTTTTTATGATGAAAGTGCAAATATTAAAATTGAACCACCATCACCTCCACAAGTTATGATTCAGGAAGATAATACCAGCGCACATCCATCACATACATATACCGATAATACTATTTTAATCAAAGAAGAAATAACACCTCCAGAAGAAATTGAAGAAAAAACCAGCTTACATCACTCACATAATAATACTGTTTTAACCAATAATGAAGAATACATTAAAAATGAACCAGAATTACATTCGGAAGTATTTATTAAAGAGGAAAAATTCGAAGAACCTGAACAAGAAACTACTGATATTGTGTCTGATCAAGATAAACAAATTGGAAGTAATAATGAGAAACGTTTTGCATGTGTTATTTGTGATAAAACATTTGCTCACCTAGGTAATTTACATGTGCATGAAAGAGTTCATACTGGAGAAAAACCATTTTCATGTGATTATTGTGATCAAAAGTTTACTCAAAAATTCAATTTAATTAAGCATTTACCGAAACATACCGGAGAAAAACCATCGACGTGTGATATCTGTGGTAAGATTTTTATTAACCCAGCTAATTTAATTTCTCATAAACGTATTCATACTGATGAGAAACCATACATTTGTGATATTTGTGATAAAGCATTTCTCGAGCAAAGTCTTTTAATTCTTCATAAACAATCGCATTCTGGTGATAATTCTTTACCGACTGTCATTAATGGAGAAAAACCATTTGCTTGTGATATTTGTGAAAAAACATTTACAAACAAAAAGGGTTTCATATATCATAGAAGAATACACACTGGAGAAAAACCATTTGCATGTAATTTTTGTGATCAAAAGTTTACAAGCCGGGCTGGATTAATTTACCACACGCGTAAACATACTGGTGAAAAACTTAAACAAAATGAACAAGTTTCGTGTGATATTTGTAATAAATTATTTAGCTCTAAAAGTAGTTTAACAACTCATAGGCGGATACATACTGGAGAAAGGCCATTTTCATGTGATTTTTGTGATAAATCGTTTACTCAACAAGCTGCTTTAATCACCCATAAACGTCTTCATACTGGAGAAAAACGTTATTCATGTGAATATTGTGATCGAGTGTTTACACAAAAATCGAATTTAATCATTCATACACGAACACATACCGGTGAAAAACCATTTTCATGTGATGTTTGTGATAAAAAATGTTCAACTCAATATAATTTAATGTGTCATAAACGTAAGCATACTAAAGAAAAACCTTTTTCTTGTGATGCTTGCGATAAAACATTTGCTCAACAATACAGCTTAACAATACATAAAAAGTTACATAATGCCGAGAAACCTTTATCCTGTTACGTTTGTAATCTGGTATTTGATTATCAAAGTAGTTTAATTAATCATATACGAACACATAATGGAGAAAAACCGTACACTTGTGATGTATGTGAGAAAAAATTTTCTCACCAATCGAATTTAACTAAACATTATTTATTACATACCGGAGAAAAACCTTATTCGTGTGATTTATGTGATAAATCATTTAGAAGTCAAATCAGTTTAATATGGCATAAACGTAGACATACTGGGGAAAAACCATTTTCGTGTGATGTTTGTGATAAAAAATTTGCCCAACAAAACAGTTTAAAAGTTCATCAACGAATACATACGGGAGAAAAACCATTTTCCTGTGAACTTTGTAACAAATCATTTACCGCTTTAACTAGTTTAGTTTATCATAAACGTAAACATGCAGGGGAAAAATCATCCAAACAAAACACTGAAAAACGTTTTCCTTGTGATTTTTGTGATAAAACTTTTATGCATAAATTAGGTTTAATTTATCATAAAAGAAGGCATACTGGGGAAAATCTTTGTACGTGTGATATTTGTGGACAAACATTTACTACACCAACGAATTTAGCTTATCATAAACGGATACATACAGGAGAAAAACCGTTCTCGTGTGAAACTTGTGGCAAAAAATTTAATAAACGAACCAATTTGAGATACCATCAGCGAGTACATACAGGAGAAAGACCTTATTCTTGTGATATTTGTGAGAAAACATTTACACAGCGTACCAGTTTGTTAAATCATAAACGCATTCATACTGGCGAAAAACTTTTTCCTTGTGATCATTGTGGAAAAACTTTTACTCAACGATCCAATCTGAATAATCATAAACGTAAACATACTGGGGAGAAACCATATAGTTGTGATTTGTGCGATAAAACATTTGCAAATAAAGCTGGTTTATTGTATCATAAAAGATTACACACGGGTGAAAAACCTTTTTCGTGTGAGGAATGTGGTGAAACATTTACGAATCAGACCAGTTTAAGTTCGCATCAACGTAAGCATACTGGGGAAAAACCATTTGCATGTGATTTTTGTGATAAAGCATTCACGCAACATTCTAGTTTAGTAAGTCATAGACGAATACATACCGGGGAAAAACCTTTCTTTTGTAAAATTTGTGATAAAACTTTTACTCAACATACCAGTTTAGTTAACCATGAACGGATTCATACAGGAGATAGACCTTACTCTTGTGATGTTTGTGGTAAAACATTTACACAGCAATCGAATTTAAATAGTCATAAAAAAGTGCATGAAATGCATGGAGAAGAAACGATTCCATGTGATATGTGTGATGAAACATTTACCAATCAAAGTAGTTTTGCGTATCATAAACAACGAATCCACGAAATTAAAACAGAGGATGGAGAAGAAACGGTTTCCTGTGATATGTGTGATGAAACATTTACCAATCAAAGCAGTTTTGCGTATCATCAACAAATGCATATCGATGGCTTAAAGACGGAAACTCAAATGTTGGAAAGTGTTAATGTTAAACAGGAACCTATTACCGTTACTGTTAAAGAGGAAGTTTTTGAGGAGGAAGAAACAATAGCATAA
Protein Sequence
MSDYPLCPPFYDESANIKIEPPSPPQVMIQEDNTSAHPSHTYTDNTILIKEEITPPEEIEEKTSLHHSHNNTVLTNNEEYIKNEPELHSEVFIKEEKFEEPEQETTDIVSDQDKQIGSNNEKRFACVICDKTFAHLGNLHVHERVHTGEKPFSCDYCDQKFTQKFNLIKHLPKHTGEKPSTCDICGKIFINPANLISHKRIHTDEKPYICDICDKAFLEQSLLILHKQSHSGDNSLPTVINGEKPFACDICEKTFTNKKGFIYHRRIHTGEKPFACNFCDQKFTSRAGLIYHTRKHTGEKLKQNEQVSCDICNKLFSSKSSLTTHRRIHTGERPFSCDFCDKSFTQQAALITHKRLHTGEKRYSCEYCDRVFTQKSNLIIHTRTHTGEKPFSCDVCDKKCSTQYNLMCHKRKHTKEKPFSCDACDKTFAQQYSLTIHKKLHNAEKPLSCYVCNLVFDYQSSLINHIRTHNGEKPYTCDVCEKKFSHQSNLTKHYLLHTGEKPYSCDLCDKSFRSQISLIWHKRRHTGEKPFSCDVCDKKFAQQNSLKVHQRIHTGEKPFSCELCNKSFTALTSLVYHKRKHAGEKSSKQNTEKRFPCDFCDKTFMHKLGLIYHKRRHTGENLCTCDICGQTFTTPTNLAYHKRIHTGEKPFSCETCGKKFNKRTNLRYHQRVHTGERPYSCDICEKTFTQRTSLLNHKRIHTGEKLFPCDHCGKTFTQRSNLNNHKRKHTGEKPYSCDLCDKTFANKAGLLYHKRLHTGEKPFSCEECGETFTNQTSLSSHQRKHTGEKPFACDFCDKAFTQHSSLVSHRRIHTGEKPFFCKICDKTFTQHTSLVNHERIHTGDRPYSCDVCGKTFTQQSNLNSHKKVHEMHGEETIPCDMCDETFTNQSSFAYHKQRIHEIKTEDGEETVSCDMCDETFTNQSSFAYHQQMHIDGLKTETQMLESVNVKQEPITVTVKEEVFEEEETIA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-