Ccar019558.1
Basic Information
- Insect
- Chrysoperla carnea
- Gene Symbol
- -
- Assembly
- GCA_905475395.1
- Location
- FR997754.1:134221052-134224783[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 34 0.00042 0.009 16.8 2.2 1 23 53 75 53 75 0.97 2 34 3.8e-06 8.3e-05 23.2 0.9 1 23 81 103 81 103 0.98 3 34 1e-05 0.00022 21.9 0.6 2 23 122 143 121 143 0.97 4 34 3.4e-05 0.00073 20.2 4.7 1 23 149 171 149 171 0.98 5 34 0.015 0.32 11.9 1.4 1 23 177 199 177 199 0.94 6 34 0.00073 0.016 16.0 0.2 2 23 205 226 204 226 0.97 7 34 3.3e-05 0.00072 20.3 0.6 1 23 232 254 232 254 0.98 8 34 0.0071 0.15 12.9 1.7 3 23 262 283 260 283 0.97 9 34 8.3e-06 0.00018 22.2 1.2 1 23 289 311 289 311 0.98 10 34 1.1e-05 0.00023 21.8 0.9 1 23 316 338 316 338 0.98 11 34 0.017 0.36 11.8 3.7 1 23 528 551 528 551 0.94 12 34 2.2e-05 0.00047 20.8 0.6 3 23 559 579 557 579 0.98 13 34 0.0017 0.037 14.9 1.4 1 23 589 611 589 611 0.97 14 34 0.0016 0.034 15.0 4.4 1 23 617 639 617 639 0.98 15 34 0.00093 0.02 15.7 0.2 1 23 645 667 645 667 0.98 16 34 0.0043 0.092 13.6 0.6 3 23 675 695 673 695 0.96 17 34 4.2e-06 9.2e-05 23.1 1.0 1 23 700 722 700 722 0.99 18 34 0.00018 0.0038 18.0 1.8 1 23 728 750 728 750 0.94 19 34 0.00021 0.0045 17.8 1.2 3 23 758 778 756 778 0.97 20 34 1.9e-07 4.2e-06 27.3 0.4 1 23 783 805 783 805 0.98 21 34 8e-05 0.0017 19.1 6.8 1 23 811 833 811 833 0.98 22 34 0.091 2 9.4 2.8 1 23 839 861 839 861 0.89 23 34 0.00056 0.012 16.4 0.2 2 23 867 888 866 888 0.97 24 34 2.6e-05 0.00056 20.6 1.0 1 23 894 916 894 916 0.98 25 34 0.2 4.3 8.4 0.4 7 23 928 944 924 944 0.92 26 34 5.9e-05 0.0013 19.5 0.7 1 23 949 971 949 971 0.98 27 34 6.7e-06 0.00014 22.4 1.0 1 23 1022 1044 1022 1044 0.98 28 34 0.00016 0.0034 18.1 0.8 1 23 1050 1072 1050 1072 0.98 29 34 0.16 3.5 8.6 3.4 1 23 1078 1100 1078 1100 0.91 30 34 0.00048 0.01 16.6 0.4 2 23 1106 1127 1105 1127 0.97 31 34 3.3e-05 0.00072 20.3 0.6 1 23 1133 1155 1133 1155 0.98 32 34 0.0071 0.15 12.9 1.7 3 23 1163 1184 1161 1184 0.97 33 34 2.7e-06 5.8e-05 23.7 1.3 1 23 1190 1212 1190 1212 0.98 34 34 3.3e-06 7e-05 23.4 1.0 1 23 1217 1239 1217 1239 0.98
Sequence Information
- Coding Sequence
- ATGGAAACAGAAATTAAAATTGAATTGAATACATCAACTGAAGAAAATAATGCATATTTATTAAATACTGAGAACATTAAAATTGAACATGAATTACAGATGTTACAGACCGAATTAATAATCAAAGATGAAAACATTGATGATATCGAACAAAATTTTATTTGTGTTTTTTGTAATAAAAAATTTACAGATTACTCAAAATTAGCTAGACATAAAAAAATCCATACGAGAAAAAAACCTTATGTGTGCGATATTTGTGATAAGAAATTTACAACACGTAAATATTTAGTTGTTCATACACGAATTCATACAGGGAAAAAATCTCGTGATAGAAAATTCGTTTGTGTTGAAAGTGAAAAATTAGTGTGCGGTGTTTGCGATAAGAAATTCAATCACAAAGGAAGTTTAATTGCACATCAACGAATCCATAGCGGAGAAAAACCATTTCAGTGTAATATTTGTGATAAAACTTTCGGCCACAAAACAACTCTAATTAGACACCAACACGTTCATACAAAAGAAAGACCTTATGCATGCGATCTCTGCGATAAGAAATTTTCCTCCCAACAATATTTAGTTTTTCATAAACAAATGCATGCGGGAAAAACTATTGAATGTGATGTTTGTAATAAGAAATTCACCCTCGAAGCAAGTTTAATTCAACATAAGCGAATTCATACAGGAGAAAAACCATTTGTTTGTGATATTTGTGATGAAAAATTTATTCAACGAACAAGTTTAAATAGACACAAACAAATTCATACAGGAGAAAAACCTTTTGGATGCGATATGTGTAATAAAAAATTCAAAGAAAAAAACGCTTTAACCGGCCACAAACGACGAAGCCATTTTGGAGAAAAACCTTTTACGTGTGATATTTGTGATAAAGGATTCACTCAGAGGACAAGCCTAACTAAACATAAATTAATTCATGGAGAAAAATCTTTCCGATGTGATATTTGTAATAAAAATTTTATCAGTCGAAGTGATTTAGCTAAACATAAACAAATTCATACAGAAGGGAAATTTTTTGAGAGTGATATTGGTGATGAATTATACAATCAAAATAAAAGTCAAGATCAATTAATTCAAACAGGAGAAACACCTTTTTTAAATAATGGGTGTGAAACAGAAGAAAGACTTTATTCAAGGGATGTTTGTGAAACAGAAGAAAGACTCAGCTTAAGGGAAGTTTGTGAAACAGAAGAAAGACTAAGCTTAAGGGAAGTTTGTGAAACAGAAGAAAGACTTTATTCAAGGGAAGTTTGTGAAACAGAAGAAAGACTTTATTCAAGGGATGTTTGTGAAACAGAAGAAAGACTTTATTCAAGGGATGTTTGTGAAACAGAAGAAAGACTTTATTCAAGGGAAGTTTGTGAAACAGAAGAAAGACTTTTTTCAAGGGATGTTTGTGAAACAGAAGAAAGACTTTATTCAAGGGATGTTTGTGAAACAGAAGAAAGACTTTATTCAAGGGATGTTTGTGAAACAGAAGAAAAACTTATTTCAATTAATGCTTGTGATAAAAATTTTAACAACGAAAGCGATTTAGATAAAAAGAAACAAATTAATACGAGAAAATTTGTATGCATTGTTTGTAACAAAAAATTTATCAACAAGACATGTTTAATTCGACATTATAAACGATCTCATTCAAACGAAAAACCTTTTGGATGTGATATTTGTGGTAAGAAATTTACCACACGTAAATATTTAGTTGTTCATACACGAATTCATACAGGGAAAAAATCTCGTGATGGAAAATTCGTTTGTGTTGTTTGTAATCGAAAATTTACTGATAAAGCAAGTTTCTTTGTACATAAACAAAATCATACTAGAGAAAAGCCATTTTCATGTGATATTTGTAAAAAGAAATTTTTCACGCGTCATTATTTAGTTATTCATAAACGAATTCACACTGGAGTAGAGAATTTTGTATGTGATGTTTGTGATAAAAAATTCATTCTTGAAAGAACTTTAATTGTACACAAACGAATCCATACTGGAGAAAAACCTCTTGCATGTGATGTTTGTGATGAAAAATTCAACCATGTGACAAGTTTAGCTCGACACAAACAAATTCATACAGGAAGAAATTTTAAATGTAATATTTGTAACAAAAAATTCACCGATAAAGCCGCTTTAATTGGACATAAACGAACTCATACTGGGGAAAAACCATTCTTGTGTGATTTCTGTGATAAAACATTCACACAAAGCACAAGTCTAGCTAGACATAAATTAAATCATACCGGAGAAAAATCTTTTGGTTGTGATGTTTGTGATAAGAAATTTTACAACAGAACCGATTTAAATAAACATAAACAAATTCATACAGGAAAAAAATTTGTATGCGAAATTTGTGATAAAAACTTCACCCAGAAATCAACCTTGATTGCACATCAACGAATCCATAACGGAGAAAAACCATTTCAGTGTCATATTTGTGATAAAAGTTTCGGTCACAAAACAACTCTCATTAGACACCAACACGTTCATACAAAAGAAAGACCTTATGCATGCGATCTTTGTGATAAGAAATTTTCCTCAAAGCAATATTTAGTTTTTCATAAACATATTCATGACGGAAAAACCATGGAATGTGATGTTTGTAATAAGAAATTCATCTTAAAAGCAAGTTTAATTGCACACAAACGAATTCATACTGGGGAAAAACCTTTTGTGTGTGATATTTGTGATGAAAAATTTAATCAACGAACAAGTTTAAATAGACACAAACAAATTCATACAGGAAGAAAATCTTTTGCCTGTAATGTTTCTGATAGAAAATTTACCCAAAATTCAAGTCTAACTAGGCATAAACAAGATCATGAAGAAAAACATTTTGAATGTTTTATTTGCAGTCAAACATTTTCCGAGAAAGAAAATTTGATTAAACATGAAAGAATTCATACTCAAGAAAAACTTAATTTTTGTGTAATACAAGAAAAATCTTTATCAAATAATTTACTCGAAACAGAACAGAAATCTCTTTCAAGTGATGTTTGTGAAACCGAAGAAAATCCTTCAAGTGATAAAAATTGTATTAACCTAAGTGAAAAATTTGTGTGTGGTGTTTGCGATAAGAAATTCAATCACAAAGGAAGTTTAATTGCTCATCAACGACTCCATAAGAAAAGAAAATCTTTCGAATGTGAACTTTGTAGTAAAATATTCCGTCAAAAAATCGGTCTAACTAGACATAAACAAGTTCATACAGGTGAAAGACCTTATGCATGTGATCTCTGTAATAAGAAATTTTCCTCCCAACAATATTTAGTTTTTCATAAACACATGCATGATGGAAAAACTATTAAATGTGATGTTTGTAATAAAAAATTCACCCTCGAAGCAAGTTTAATTCAACATAAGCGAATTCATACAGGAGAAAAACCATTTGTTTGTGATATTTGTGATGAAAAATTTATTCAACGAACAAGTTTAAATAGACACAAACAAATTCATACAGGAGAAAAACCTTTTGGATGCGATATGTGTAATAAAAAATTCAAAGAAAAAAACGCTTTAACCGGCCACAAACGACGAAGCCATTTTGGGGAAAAACCTTTTACGTGTGATATTTGTGATAAAGTATTCACTCAGAGGACAAGCCTAACTAAACATAAATTGATTCATGGAGAAAAATCTTTCCGATGTGATATTTGTAATAAAACTTTTATCAGTCGAAGTGATTTAGCTAAACATAAACAAATTCATACAGAAGAGTTTTAG
- Protein Sequence
- METEIKIELNTSTEENNAYLLNTENIKIEHELQMLQTELIIKDENIDDIEQNFICVFCNKKFTDYSKLARHKKIHTRKKPYVCDICDKKFTTRKYLVVHTRIHTGKKSRDRKFVCVESEKLVCGVCDKKFNHKGSLIAHQRIHSGEKPFQCNICDKTFGHKTTLIRHQHVHTKERPYACDLCDKKFSSQQYLVFHKQMHAGKTIECDVCNKKFTLEASLIQHKRIHTGEKPFVCDICDEKFIQRTSLNRHKQIHTGEKPFGCDMCNKKFKEKNALTGHKRRSHFGEKPFTCDICDKGFTQRTSLTKHKLIHGEKSFRCDICNKNFISRSDLAKHKQIHTEGKFFESDIGDELYNQNKSQDQLIQTGETPFLNNGCETEERLYSRDVCETEERLSLREVCETEERLSLREVCETEERLYSREVCETEERLYSRDVCETEERLYSRDVCETEERLYSREVCETEERLFSRDVCETEERLYSRDVCETEERLYSRDVCETEEKLISINACDKNFNNESDLDKKKQINTRKFVCIVCNKKFINKTCLIRHYKRSHSNEKPFGCDICGKKFTTRKYLVVHTRIHTGKKSRDGKFVCVVCNRKFTDKASFFVHKQNHTREKPFSCDICKKKFFTRHYLVIHKRIHTGVENFVCDVCDKKFILERTLIVHKRIHTGEKPLACDVCDEKFNHVTSLARHKQIHTGRNFKCNICNKKFTDKAALIGHKRTHTGEKPFLCDFCDKTFTQSTSLARHKLNHTGEKSFGCDVCDKKFYNRTDLNKHKQIHTGKKFVCEICDKNFTQKSTLIAHQRIHNGEKPFQCHICDKSFGHKTTLIRHQHVHTKERPYACDLCDKKFSSKQYLVFHKHIHDGKTMECDVCNKKFILKASLIAHKRIHTGEKPFVCDICDEKFNQRTSLNRHKQIHTGRKSFACNVSDRKFTQNSSLTRHKQDHEEKHFECFICSQTFSEKENLIKHERIHTQEKLNFCVIQEKSLSNNLLETEQKSLSSDVCETEENPSSDKNCINLSEKFVCGVCDKKFNHKGSLIAHQRLHKKRKSFECELCSKIFRQKIGLTRHKQVHTGERPYACDLCNKKFSSQQYLVFHKHMHDGKTIKCDVCNKKFTLEASLIQHKRIHTGEKPFVCDICDEKFIQRTSLNRHKQIHTGEKPFGCDMCNKKFKEKNALTGHKRRSHFGEKPFTCDICDKVFTQRTSLTKHKLIHGEKSFRCDICNKTFISRSDLAKHKQIHTEEF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -