Ccar008067.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Chrysoperla carnea
Gene Symbol
-
Assembly
GCA_905475395.1
Location
FR997757.1:53487140-53493648[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 48 0.0002 0.0043 17.8 0.6 2 23 63 85 63 85 0.97
2 48 0.034 0.74 10.8 0.9 1 23 95 118 95 118 0.94
3 48 0.094 2 9.4 2.4 1 23 123 147 123 147 0.91
4 48 0.058 1.3 10.1 0.6 1 23 161 183 161 183 0.96
5 48 0.00042 0.0091 16.8 1.2 1 23 188 211 188 211 0.98
6 48 8.5 1.8e+02 3.2 6.0 2 23 214 235 214 235 0.95
7 48 0.24 5.2 8.1 2.7 2 23 243 264 242 264 0.96
8 48 0.00021 0.0044 17.8 0.5 1 23 267 289 267 289 0.98
9 48 7.1e-05 0.0015 19.2 2.5 1 23 295 317 295 317 0.99
10 48 3.8e-07 8.1e-06 26.4 0.3 1 23 323 345 323 345 0.98
11 48 0.00039 0.0083 16.9 1.4 1 23 351 374 351 374 0.98
12 48 0.0056 0.12 13.2 0.2 2 23 444 466 444 466 0.96
13 48 0.022 0.47 11.4 1.7 1 23 477 500 477 500 0.91
14 48 0.045 0.97 10.4 0.2 1 22 505 526 505 529 0.90
15 48 0.0093 0.2 12.6 1.3 1 23 537 560 537 560 0.96
16 48 0.00047 0.01 16.6 1.9 1 23 565 589 565 589 0.94
17 48 0.034 0.73 10.8 1.0 1 23 603 625 603 625 0.98
18 48 0.00018 0.0038 18.0 1.1 1 23 630 653 630 653 0.98
19 48 2.7 58 4.8 4.7 3 23 657 678 656 678 0.95
20 48 0.00017 0.0036 18.1 1.9 2 23 686 707 685 707 0.97
21 48 0.00089 0.019 15.8 0.4 1 23 710 732 710 732 0.98
22 48 0.00015 0.0032 18.2 1.9 1 23 738 760 738 760 0.98
23 48 1.6e-06 3.5e-05 24.4 0.2 1 23 766 788 766 788 0.98
24 48 0.0056 0.12 13.2 0.2 2 23 853 875 853 875 0.96
25 48 0.012 0.25 12.2 1.6 1 23 886 909 886 909 0.94
26 48 0.025 0.53 11.2 0.5 1 23 914 938 914 938 0.91
27 48 0.1 2.2 9.3 0.8 1 23 953 976 953 976 0.96
28 48 0.0034 0.074 13.9 1.5 1 23 981 1005 981 1005 0.94
29 48 0.0029 0.062 14.2 0.5 1 23 1019 1041 1019 1041 0.97
30 48 0.00018 0.0038 18.0 1.4 1 23 1046 1069 1046 1069 0.98
31 48 1.5e-05 0.00033 21.3 2.0 2 23 1102 1123 1101 1123 0.97
32 48 0.00016 0.0035 18.1 0.9 1 23 1126 1148 1126 1148 0.98
33 48 9.6e-05 0.0021 18.8 1.9 1 23 1154 1176 1154 1176 0.99
34 48 7.1e-06 0.00015 22.4 0.9 1 23 1182 1204 1182 1204 0.98
35 48 0.0056 0.12 13.2 0.2 2 23 1269 1291 1269 1291 0.96
36 48 0.012 0.25 12.2 1.6 1 23 1302 1325 1302 1325 0.94
37 48 0.026 0.57 11.1 0.8 1 23 1330 1353 1330 1353 0.95
38 48 0.063 1.4 9.9 0.7 1 23 1358 1382 1358 1382 0.91
39 48 0.1 2.2 9.3 0.8 1 23 1397 1420 1397 1420 0.96
40 48 0.0039 0.084 13.8 1.2 1 23 1425 1449 1425 1449 0.94
41 48 0.0086 0.19 12.7 0.5 1 23 1463 1485 1463 1485 0.97
42 48 0.00018 0.0038 18.0 1.4 1 23 1490 1513 1490 1513 0.98
43 48 8.5 1.8e+02 3.2 6.0 2 23 1516 1537 1516 1537 0.95
44 48 0.24 5.2 8.1 2.7 2 23 1545 1566 1544 1566 0.96
45 48 0.00021 0.0044 17.8 0.5 1 23 1569 1591 1569 1591 0.98
46 48 0.0002 0.0044 17.8 3.7 1 23 1597 1619 1597 1619 0.98
47 48 1.3e-06 2.7e-05 24.7 0.1 1 23 1625 1647 1625 1647 0.98
48 48 0.00039 0.0083 16.9 1.4 1 23 1653 1676 1653 1676 0.98

Sequence Information

Coding Sequence
ATGAACATGTTTTGGCTACAAGGTTGTTGTCATCAGGAATATTCATCAATTAAGAAAGAGGACACATCAGATTATGACTATCAAGATAATAGTTTAGAAATAAAAGAAGAAGATACTAATACAGAAGATAATTTAATCGAACGCGATAATTTGATAAAAACAGAATCTGATGATTATATAAATCGAAAATGTGATATTTGTAATGAAATATTTCAAAATCCTAGTGATTTACGTAATCATAGAAAAAAAATACATTGGAAAAAAAGAAAGCTTGCTTTAAATTTTGCATGTGACGAGTGTGGAGAAAAATATACAAAACAGGGTTTCTTAGATCAACATAAAAAGCAGCGACACACATCATATGGATACAGGTGTGATGTTTGTAATGAAGTATTTCAAGGCCACGGTGAATTACATACGCATTATAAATCGGACTTCCACAAAGAAAACAAAAAGATTAAAGATAACGAAAAATCTGATTTCGCGTGTGATATATGTGGCCACACCGTGGGAACTAAACGTGGTTTACTGAGCCACAAAAAGTTACATACAACAAATGGATTTCAATGTAGAGAATGTTCTAAAGGATTTTCAACACTAAATGATCTGCTTACACACAAAAAAACAGCACATGTTCCATATTGTAATATTTGTAATAAAGAATTCCGGTGTTACAGTGCATATAAAATTCATTGTCGTACACATGATCCAAACAATTCGGAACTTACATGTAAAGAATGTGGTAAAAAATGTGCATCGCAACAAATATATAGTCGACATGTGAAATCACATGATGGTTTTACATGTTATCAATGTGGGAAAATGTTTCGTTGGGCTGATGCTCTTAAAAGTCATATGTTGACGCATACCGGTGAAAAACCATACAGTTGCACAATTTGTGATAAGAAATTCCGACGAAAAAACATATTAAATGATCATCAACGTACACATACTAAAGAAAGGCCATTTATTTGTCCTGTGTGTGGGAAAGGATTTACACAACGGAGTCCACTTAAATTACATATGCGGACTCATACTGGGGAACGACCTTATAAATGTTCGATATGTTATCAAGAGTTTATTAGTAGGAATTATTTGAATATCCATATGAAAAGTTCACATGATACGGCCGATGTTACATTATCTTACTTAAACAAATGCATCTCAAATTCTAGGGAATATTCATCAATTAAGAAAGAGGACACATCAGATTATGACTATCAAGATTATAGTCTACAAATAAAAGAAGAAAACATTAATACAGAAGATAGTTTTTTAATTGAAGACGGTAATTTGATAAAAACAGAAAATGATGATTATATAAATCGAAAATGTGATATTTGTAATGAAATATTCCAAAATCCGAATGATTTACTTAATCATCGATTGAAAATACATGGGAGGAAAGGAATAAAGCTTAGTTTAGATTTTACATGTGACGAGTGTGGTAATAAATATACAAGACAGGGTTTCTTAGAACAACATAAATTCCTGAAACATTCAAGAAATGGATACAGGTGTGATATTTGTAATGAAGGATTTCTAAGTAACGATGGTTTACAAAAACACTTTTCAACGGATATCCATAAAAAAAAGCTTGGTTTAAATTTTACATGTGATGAGTGTGGTGATAAATATACAACACAGGGTTACTTAGAACAACATAAAAAGCAGAAACATACAACAAATGGATACAGGTGTGATATTTGTAATGAAGTATTTCAAAGTCACGGTGAATTGAATAAACATTATAAAACAGACTTCCATAAAGAAAACAAAAAGAATAAAAAAAGGGAAAAATCAGATTACACATGTGATAGATGTGGCCACACAGTGGGAACTAGAGAGGGTTTAAGGGTGCATAAAAAGCTACATACAACAAATGGATTTCGATGTAAAGAATGTTCTAAAGGATTTGCAACACTATATGATTTACTTACACACAAAAAAACAGCACATGCTCCGTTTTGCAGTATTTGTAAAAAAGAATTCAAGTGTTACAGTGAATATAAAATCCATCATCGTGCAGTACACGATCCAAATTATTCGGGGATAACATGTAATGAGTGTGGTAAAAAATTTAAAACGAAACAAGTATATAATCGTCATGTGAAATCACATGAAGGTTTTCCATGTTATCATTGTGGGAAAATGTTTGGTTGGGCTGATGCTCTTAAAAGTCATATGTTGACACATACTGGTGAAAAACCATTTAGTTGCACAATTTGTGATAAGAAATTCCGGCAAAGTAACATATTAAAAGAACATTTACGTACACATACTAAAGAAAGACCATTTATTTGTTCCGTGTGTGGAAAAGGATTCACGCAACAGAGTCCACTTAAATTACATATGCGGATACATACTGGAGAACGACCTTATAAATGTACGATTTGTAGTCAAGGGGAATATTCATCAATTAAGAAAGAGGATACATCAGATTTTGACAATCAAGACATTTTACAAATAAAAGAAGAAGATATTACTACAGAAGAAAGTTTTTTAAGTGAAGGCGGTAATTTGATAAAAACAGAAAATGATGATTATATAAATCGAAAATGTGATATTTGTAATGAAATATTCCAAAATCCGAATGATTTACTTAATCATCGATTGAAAATACATGGGAGGAAAGGAATAAAGCTTAGTTTAGATTTTACATGTGACGAGTGTGGTAATAAATATACAAGACAGATTTTGTTAGAACAACATAAATTCCGGAAACATTCAAAAAATGGATACAGGTGTGATATTTGTAATGAAGGATTTCTAAGTAACGATGGTTTACAAAAACATTATACAACGGATTTCCATAAAAAAAATGAACATGAGAAAAAAAGAAAGCTAGCTTTAAATTTTACATGTGACGAGTGTGGTGATAAATATGCAACACAAGGTTATTTAGATCAACATAAAAAGCAGAAACATTCAACATATGGATACAGGTGTGGTATTTGTAATGAAGTATTTCAAGGCCACGGTGAATTGAAAAAACATTATAAAACCGACTTCCATAAAGAAAACAAACAGATAAAGGAAGACGAAAAATCTGGTTACTCGTGTGATATTTGTGGCCACACAGTGGTAACTAGAGAGGGTTTAAGGGTGCATAAAAAACTACATACAACAAATGGATTTCGATGTAAAGAATGTTCTAAAGGATTTTCAACACTAAATGATCTGCTTACACACAAAAAAACAGCACATGCTCCGTTTTGCAGTATTTGTAAAAAAGAATTCAATTGTTACGGTACATATAAAGTCCATCATCGTGAAGTACACGATCCAAATTATTCGGGGATAACATGTAATGAGTGTGGTAAAAAATTTAAAACGAAACAAGAATATAATCGTCATGTGAAATCACATGATGGTTTTACATGTTATCAATGTGGGAAAATGTTTCGTTGGGCTGATTCTCTTAAAAGTCATATGTTGACGCATACCGGTGAAAAACCATACAGTTGCACAATTTGTGATAAGAAATTCCGGCAAAGTACCATATTAAAAGATCATTTACGTACACATACTAAAGAAAGACCATTTATTTGTTCCGTGTGTGGAAAAGGATTCACGCAACATAGTCCACTTAAATTACATATGCGAATACATACTGGAGAACGACCTTATAAATGTACGATTTGTAGTCAAGGGGAATATTCATCAATTAAGAAAGAGGATACATCAGATTTTGACAATCAAGACATTTTACAAATAAAAGAAGAAGATATTACTACAGAAGAAAGTTTTTTAAGTGAAGGCGGTAATTTGATAAAAACAGAAAATGATGATTATATAAATCGAAAATGTGATATTTGTAATGAAATATTCCAAAATCCGAATGATTTACTTAATCATCGATTGAAAATACATGGGAGGAAAGGAATAAAGCTTAGTTTAGATTTTACATGTGACGAGTGTGGTAATAAATATACAAGACAGATTTTGTTAGAACAACATAAATTCCGGAAACATTCAAAAAATGGATACAGGTGTGATATTTGTAATGAAGGATTTCTAAGTAACGATGGTTTACAAAAACATACATTCCGGAAACATTCAAAAAATGGATACAGGTGTGATATTTGTAATGAAGGATTTCTAAGTAACAATGGTTTACAAAAACACTATACAACGGATTTCCATAAAAAAAATGAACATGAGAAAAAAAGAAAGCTAGCTTTAAATTTTACGTGTGATGAGTGTGGTGATAAATATGCAACACAAGGTTATTTAGATCAACATAAAAAGCAGAAACATTCAACATATGGATACAGGTGTGGTATTTGTAATGAAGTATTTCAAGGCCACGGTGAATTGAATAAACATTATAAAACCGACTTCCATAAAGAAAACAAACAGATAAAAGAAGACGAAAAATCTGGTTACTCGTGTGATATATGTGGCCACACAGTGGGAACTAGAGAGGGTTTAAGGGTGCATAAAAAGCTACATACAACAAATGGATTTCGATGTAAAGAATGTTCTAAAGGATTTTCAACACTAAATGATCTGCTTACACACAAAAAAACAGCACATGTTCCATATTGTAATATTTGTAATAAAGAATTCCGGTGTTACAGTGCATATAAAATTCATTGTCGTACACATGATCCAAACAATTCGGAACTTACATGTAAAGAATGTGGTAAAAAATGTGCCTCCCAACAAATATATAGTCGACATGTGAAATCACATGATGGTTTTACATGTTATCAATGTGGGAAAATGTTTCGTTGGGCTGATGCTCTTAAAAGTCATATGTTGACGCATACAGGAGAAAAACCATTCAGTTGTACTTTTTGCGAGAAAAAATTCCGAAAGAAAGTTTATTTAAATGAACATTTACGTACACATACGAAAGAAAGGCCATTTATTTGTCCTGTGTGTGGGAAAGGATTTACACAACGGGGTCCACTTAAATTACATATGCGGACTCATACTGGGGAACGACCTTATAAATGTTCGATATGTTATCAAGAGTTTATTAGTAGGAATTATTTGAATATCCATATGAAAAGTTCACATGATACGGCCGATGTTCAATTATCTGTATAG
Protein Sequence
MNMFWLQGCCHQEYSSIKKEDTSDYDYQDNSLEIKEEDTNTEDNLIERDNLIKTESDDYINRKCDICNEIFQNPSDLRNHRKKIHWKKRKLALNFACDECGEKYTKQGFLDQHKKQRHTSYGYRCDVCNEVFQGHGELHTHYKSDFHKENKKIKDNEKSDFACDICGHTVGTKRGLLSHKKLHTTNGFQCRECSKGFSTLNDLLTHKKTAHVPYCNICNKEFRCYSAYKIHCRTHDPNNSELTCKECGKKCASQQIYSRHVKSHDGFTCYQCGKMFRWADALKSHMLTHTGEKPYSCTICDKKFRRKNILNDHQRTHTKERPFICPVCGKGFTQRSPLKLHMRTHTGERPYKCSICYQEFISRNYLNIHMKSSHDTADVTLSYLNKCISNSREYSSIKKEDTSDYDYQDYSLQIKEENINTEDSFLIEDGNLIKTENDDYINRKCDICNEIFQNPNDLLNHRLKIHGRKGIKLSLDFTCDECGNKYTRQGFLEQHKFLKHSRNGYRCDICNEGFLSNDGLQKHFSTDIHKKKLGLNFTCDECGDKYTTQGYLEQHKKQKHTTNGYRCDICNEVFQSHGELNKHYKTDFHKENKKNKKREKSDYTCDRCGHTVGTREGLRVHKKLHTTNGFRCKECSKGFATLYDLLTHKKTAHAPFCSICKKEFKCYSEYKIHHRAVHDPNYSGITCNECGKKFKTKQVYNRHVKSHEGFPCYHCGKMFGWADALKSHMLTHTGEKPFSCTICDKKFRQSNILKEHLRTHTKERPFICSVCGKGFTQQSPLKLHMRIHTGERPYKCTICSQGEYSSIKKEDTSDFDNQDILQIKEEDITTEESFLSEGGNLIKTENDDYINRKCDICNEIFQNPNDLLNHRLKIHGRKGIKLSLDFTCDECGNKYTRQILLEQHKFRKHSKNGYRCDICNEGFLSNDGLQKHYTTDFHKKNEHEKKRKLALNFTCDECGDKYATQGYLDQHKKQKHSTYGYRCGICNEVFQGHGELKKHYKTDFHKENKQIKEDEKSGYSCDICGHTVVTREGLRVHKKLHTTNGFRCKECSKGFSTLNDLLTHKKTAHAPFCSICKKEFNCYGTYKVHHREVHDPNYSGITCNECGKKFKTKQEYNRHVKSHDGFTCYQCGKMFRWADSLKSHMLTHTGEKPYSCTICDKKFRQSTILKDHLRTHTKERPFICSVCGKGFTQHSPLKLHMRIHTGERPYKCTICSQGEYSSIKKEDTSDFDNQDILQIKEEDITTEESFLSEGGNLIKTENDDYINRKCDICNEIFQNPNDLLNHRLKIHGRKGIKLSLDFTCDECGNKYTRQILLEQHKFRKHSKNGYRCDICNEGFLSNDGLQKHTFRKHSKNGYRCDICNEGFLSNNGLQKHYTTDFHKKNEHEKKRKLALNFTCDECGDKYATQGYLDQHKKQKHSTYGYRCGICNEVFQGHGELNKHYKTDFHKENKQIKEDEKSGYSCDICGHTVGTREGLRVHKKLHTTNGFRCKECSKGFSTLNDLLTHKKTAHVPYCNICNKEFRCYSAYKIHCRTHDPNNSELTCKECGKKCASQQIYSRHVKSHDGFTCYQCGKMFRWADALKSHMLTHTGEKPFSCTFCEKKFRKKVYLNEHLRTHTKERPFICPVCGKGFTQRGPLKLHMRTHTGERPYKCSICYQEFISRNYLNIHMKSSHDTADVQLSV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-