Ccar019849.1
Basic Information
- Insect
- Chrysoperla carnea
- Gene Symbol
- -
- Assembly
- GCA_905475395.1
- Location
- FR997754.1:28794177-28797572[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 31 7.2e-05 0.0016 19.2 2.6 1 23 106 128 106 128 0.98 2 31 0.0002 0.0042 17.8 3.8 1 23 134 156 134 156 0.98 3 31 1.1e-06 2.4e-05 24.9 0.6 1 23 162 184 162 184 0.97 4 31 2e-05 0.00043 21.0 3.0 1 23 190 212 190 212 0.97 5 31 0.0016 0.035 14.9 0.1 1 23 218 240 218 240 0.94 6 31 5.5e-06 0.00012 22.7 3.2 1 23 246 268 246 268 0.98 7 31 0.00016 0.0035 18.1 3.5 1 23 274 296 274 296 0.98 8 31 2.6e-06 5.7e-05 23.7 1.2 1 23 302 324 302 324 0.97 9 31 1.7e-05 0.00036 21.2 2.6 1 23 330 352 330 352 0.97 10 31 1.2 25 6.0 0.0 5 23 362 380 361 380 0.92 11 31 3.1e-05 0.00067 20.4 2.9 1 23 544 566 544 566 0.98 12 31 6.2e-05 0.0013 19.4 3.1 1 23 572 594 572 594 0.97 13 31 7.9e-06 0.00017 22.2 1.1 1 23 600 622 600 622 0.97 14 31 1e-05 0.00022 21.9 2.5 1 23 628 650 628 650 0.98 15 31 9e-05 0.0019 18.9 0.3 3 23 658 678 657 678 0.98 16 31 5.4e-06 0.00012 22.7 1.3 1 23 684 706 684 706 0.98 17 31 0.00055 0.012 16.4 0.4 1 23 712 734 712 734 0.97 18 31 0.0011 0.024 15.5 3.4 1 23 740 762 740 763 0.95 19 31 0.00062 0.013 16.3 5.1 1 23 770 792 770 792 0.98 20 31 7.5e-05 0.0016 19.1 0.3 1 23 798 820 798 820 0.96 21 31 1.6e-06 3.5e-05 24.4 2.1 1 23 826 848 826 848 0.98 22 31 3.1e-05 0.00068 20.3 0.8 1 23 854 876 854 876 0.98 23 31 1.2e-06 2.6e-05 24.8 0.5 1 23 882 904 882 904 0.98 24 31 0.00088 0.019 15.8 3.9 1 23 910 932 910 932 0.98 25 31 0.0014 0.029 15.2 0.3 1 23 938 960 938 960 0.95 26 31 1.3e-05 0.00028 21.5 2.0 1 23 966 988 966 988 0.98 27 31 0.00028 0.0059 17.4 3.5 1 23 994 1016 994 1016 0.97 28 31 2.3e-05 0.00049 20.8 0.7 1 23 1022 1044 1022 1044 0.95 29 31 1.5e-06 3.2e-05 24.5 1.5 1 23 1050 1072 1050 1072 0.98 30 31 5.4e-05 0.0012 19.6 3.4 1 23 1078 1100 1078 1101 0.96 31 31 9.2e-06 0.0002 22.0 0.8 1 23 1107 1129 1107 1129 0.98
Sequence Information
- Coding Sequence
- ATGGATGATCAACGAATTAAAAAAGAAACACTGGAAAACGATAGTTTCACAATGGAAGAAATACTAGACAACGGCAGTTTGTGTGTTAGGATAAAACTTGAACAGGCTGTACAAGATCATGAAAATGAGGAACCTTTATGTGTGGTCAACTACGAAAAAGTTAAACTTGAACCAGAATTAAATACGGAATTAATGACTAATGAAATAACAGAAGAAAGTGTTGTAATGGAAAATGAGATAATTAAAAATGAAATATTGGAAAAAATACCAGACAATAGCAGTATTGAAATGGAAAGAATTAATGAGAATGACGATTTTTCATGTGACATTTGTAGTAAAACATTCAAAAGAAAAAGATATTTAGTTCAACACAAACAAATTCACGCTGTAGAAAAACCATTTTCATGCGATATTTGTAATAAAACTTTTACCTATCAATGCTATTTACTTGTACATAAACGAATTCACAATGAAGAAAAGCTGTTTTCATGTGACATTTGTAACAAAACGTTTAATCAAAAAGGTAATTTGATTAGGCATCAAGTGATTCACACCGGAGAGAGACCGTTTTCATGTGATATTTGTAATAAATCATTTAATACAAAAAGTTACTTAGTTCAACACAAACGCTTTCATACTCGAGAAAAACCATTTGCTTGTGATATTTGTAATAAATCATATGTTGATGAGGACAGTTTAGTACAACATAAGGGGATTCATACTGAAGAAGAGCATTTTTCATGTGATATTTGTAATAAAACATTTAAAAGAAAAAGATATTTAGAACAACACAAACGAATTCATACGGTAGAGAAACCATTTTCATGCGATATTTGTAATAAAACCTTTACTTATCAATGCTATTTAGTTGTGCACAAACGTATTCACACTGAAGAAAAGCTATTTTCGTGTAATATTTGTAACAAAACATTTAATCAAAAAAATAATTTGGTTAGGCATCAAGTGATTCATACAGGAGAGAGACCGTTTTCATGCGATATTTGTAATAAATCATTTAACACACAAAGTTATTTAGTTCAACATAAACGTTTTCACAATCGAGAAAAATCTTCTTCAGGCGATATTTGTAGAAAAGAATTTATTGATGAAAATAGTTTAGAACAACATAAAGGAATTCATAGTAAAGAAGAACTAAAAAAACTAAATACGGAATTCATAGAAGATGAGCGAATTAAAAAAGAAACACTGGAAAACGACAGTTTCACAATGGAAGAAATACTAGACAACGGCAGTCTTTGTGTTAGGATAAAACTTGAACAGGCTGAACAAGATCATGAAAATGAGGAGCCTTTATATGCGGTCAACTATGAAAATGTTAAACAAGAATCAAATACGGAATTAATGTCTAATGAAATAACAGAAGAAGGTGGTGTAATGGAAGATGGGAGATTTAAAGATGAAATACTGAAAAGCAGCAACATGACATTGGAAAATATATCAGAAAACAACAGAAATATTTATATGGAACGAACTCGTGAAAATGAAGAGCATTTGTATACGGTACCAAATTTTGAACTCGAAGAAATACGTTCAGAATTAATTATTAAAGATGAAGTATTAGATGAAAGTGTTTTAAAAACACAACGCGTACATGTTACAAAAGATCCGTTTTCATGTGATATTTGTAATAAAACCTTTAAAAAGAAACGATATTTAGCTCAACACAAACGAATTCACACTGCAGAAAAACCATTTGCATGCGATATTTGTAATAAAACTTTTACCTATCAATGTTATTTAGTAGCGCATAAACGTACCCACAATGAAGAAAATCTATTTTCATGTGATGTTTGTAACAAAAAATTTAATCAAAAAAATAATTTGATTAGGCATCAAGTGATTCATACAGGAGAGAGACCGTTCTCATGTGATTTTTGTAATAAATCATTTAATACACAAAGTTATTTAGTTACACATAGACGCATTCATACTCGAGAAAAATCATTATTATGTGATATTTGTAATAAATCATATGTTGATGAAAGCAGTTTAGCAAAACATAAACGAATTCATTATGTAGAAAAACCATATTCGTGTGAGGTTTGTGATAAAACATTTAACTATCAAAGCAGTCTAGTTACACATAGGCGACTTCACACTGGAGAAAAACCATTTTCTTGTACCGTTTGTAATAAAGCATTTTATGCTCAAAGTCTTTTAGCTAAACATAAGGAAATTCATACTAAAAACAAGCTATTTTCATGTGATATTTGTAATGAAACATTTACTCAGCAAATTTGTTTAGCTCAACATAAAAACATTCATCATAATGGGGTAGAAAAACCATTTACGTGTGATATTTGTTATAAAACTTTTACCTATAACTGCTATTTAGTTAGACACAAACGTATTCATAATGAAGTAAAGCCTTTTTCATGCGATGTTTGTAACAAAACATTTACTTTAAAAGTAAATTTAGTTAGACATGAAATAATTCACACAGGAGAAAAACCGTTTACATGTAATATTTGTAATAAATCATTTAATACACAAAGTTATTTAGTTCAACATAAACGCATTCATACTCGAGGCAAGCCATTTGTATGTGATATTTGTAATAGAACATATACTGATGAAAAAGGTTTAACAAAACATAAACGAGTCCACACTGGAGAAATTTCATATCCATGTGATATTTGCAATAAAACATTTAATGATGAAAGCAGCTTAATAAAACATAAACGAATTCACTCTGGGGAAAAACCGTATTCTTGTGATGTTTGTAATAATACCTTTTACCATCAAAGTAGTCTACTTACACATAAACGTAGTCACTCGGATGAAAAACAATTTTCTTGTGATATTTGTAATAAAATATTTTACGCACAAAGTCTTTTAGCTAAACATAAAGGAATTCATACGAAAGAAAAACTATTTTCGTGTGATATTTGTAATAAAACATTTACTCGGCAAATCTATTTATCTCAACACAAACGAATTCATAATGAAGAAAAACCATTTGCTTGCGATATTTGTAATAAAACCTTTATCTATCGGTGTTATTTAAATATACATAAACGTACTCACAATGAAGAAAAACTATTTTCATGTGATGTTTGTAATAAAGCTTTTAATCAAAAAAATAATTTGATTAGGCATAAAGTGATTCACACAGGAGAGAGACCGTTCTCATGTGATATTTGTAATAAATCATTTAATACACAAAGTTATTTAGTTACACATAGACGCATTCACAATAAAGAAAAACCATTTTCTTGTGATATTTGTTCTAAATCATTTACCAATGAAAGTAAATTAGATAAACATAAACGTATTCATCACAATAGAGAAAGATCATTTGAATGTGATATTTGTAATAAAACATTGACTACTAAATATAATTTAATTATCCATAAACGTATTCACAATAAATAA
- Protein Sequence
- MDDQRIKKETLENDSFTMEEILDNGSLCVRIKLEQAVQDHENEEPLCVVNYEKVKLEPELNTELMTNEITEESVVMENEIIKNEILEKIPDNSSIEMERINENDDFSCDICSKTFKRKRYLVQHKQIHAVEKPFSCDICNKTFTYQCYLLVHKRIHNEEKLFSCDICNKTFNQKGNLIRHQVIHTGERPFSCDICNKSFNTKSYLVQHKRFHTREKPFACDICNKSYVDEDSLVQHKGIHTEEEHFSCDICNKTFKRKRYLEQHKRIHTVEKPFSCDICNKTFTYQCYLVVHKRIHTEEKLFSCNICNKTFNQKNNLVRHQVIHTGERPFSCDICNKSFNTQSYLVQHKRFHNREKSSSGDICRKEFIDENSLEQHKGIHSKEELKKLNTEFIEDERIKKETLENDSFTMEEILDNGSLCVRIKLEQAEQDHENEEPLYAVNYENVKQESNTELMSNEITEEGGVMEDGRFKDEILKSSNMTLENISENNRNIYMERTRENEEHLYTVPNFELEEIRSELIIKDEVLDESVLKTQRVHVTKDPFSCDICNKTFKKKRYLAQHKRIHTAEKPFACDICNKTFTYQCYLVAHKRTHNEENLFSCDVCNKKFNQKNNLIRHQVIHTGERPFSCDFCNKSFNTQSYLVTHRRIHTREKSLLCDICNKSYVDESSLAKHKRIHYVEKPYSCEVCDKTFNYQSSLVTHRRLHTGEKPFSCTVCNKAFYAQSLLAKHKEIHTKNKLFSCDICNETFTQQICLAQHKNIHHNGVEKPFTCDICYKTFTYNCYLVRHKRIHNEVKPFSCDVCNKTFTLKVNLVRHEIIHTGEKPFTCNICNKSFNTQSYLVQHKRIHTRGKPFVCDICNRTYTDEKGLTKHKRVHTGEISYPCDICNKTFNDESSLIKHKRIHSGEKPYSCDVCNNTFYHQSSLLTHKRSHSDEKQFSCDICNKIFYAQSLLAKHKGIHTKEKLFSCDICNKTFTRQIYLSQHKRIHNEEKPFACDICNKTFIYRCYLNIHKRTHNEEKLFSCDVCNKAFNQKNNLIRHKVIHTGERPFSCDICNKSFNTQSYLVTHRRIHNKEKPFSCDICSKSFTNESKLDKHKRIHHNRERSFECDICNKTLTTKYNLIIHKRIHNK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -