Ccar008257.1
Basic Information
- Insect
- Chrysoperla carnea
- Gene Symbol
- -
- Assembly
- GCA_905475395.1
- Location
- FR997757.1:32335603-32339712[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 27 3.6e-06 7.7e-05 23.3 2.1 1 23 69 91 69 91 0.98 2 27 2.5e-07 5.3e-06 27.0 0.6 1 23 97 119 97 119 0.98 3 27 0.0024 0.051 14.4 0.3 1 23 138 160 138 160 0.98 4 27 1.5e-05 0.00033 21.3 0.2 1 23 166 188 166 188 0.97 5 27 7.2e-07 1.5e-05 25.5 3.5 1 23 194 216 194 216 0.98 6 27 1.6e-05 0.00034 21.3 0.2 1 23 222 244 222 244 0.97 7 27 2.8e-07 6e-06 26.8 0.8 1 23 250 272 250 272 0.98 8 27 1.1e-05 0.00024 21.7 0.9 3 23 280 300 278 300 0.98 9 27 0.00027 0.0058 17.4 0.9 1 23 306 328 306 328 0.98 10 27 1.3e-05 0.00029 21.5 0.7 1 23 352 374 352 374 0.98 11 27 2.9e-06 6.2e-05 23.6 1.1 1 23 380 402 380 402 0.97 12 27 1.4e-05 0.0003 21.4 0.8 1 23 408 430 408 430 0.98 13 27 1e-06 2.3e-05 25.0 1.0 1 23 436 458 436 458 0.98 14 27 2.2e-08 4.7e-07 30.3 1.1 1 23 464 486 464 486 0.98 15 27 2.1e-05 0.00045 20.9 2.3 1 23 492 514 492 514 0.98 16 27 7.7e-05 0.0017 19.1 0.3 1 23 670 692 670 692 0.98 17 27 1.1e-05 0.00023 21.8 0.3 2 23 699 720 698 720 0.96 18 27 5e-06 0.00011 22.8 0.2 1 23 726 748 726 748 0.98 19 27 1.2e-07 2.6e-06 28.0 1.3 1 23 754 776 754 776 0.98 20 27 6e-07 1.3e-05 25.7 1.4 1 23 782 804 782 804 0.98 21 27 3.6e-05 0.00078 20.1 2.0 1 23 810 832 810 832 0.97 22 27 1.4e-05 0.00031 21.4 0.3 1 23 838 860 838 860 0.98 23 27 1.2e-06 2.6e-05 24.8 0.4 1 23 866 888 866 888 0.98 24 27 4.1e-06 8.8e-05 23.1 0.9 1 23 894 916 894 916 0.98 25 27 0.00031 0.0067 17.2 1.3 1 23 922 944 922 944 0.97 26 27 1.2e-05 0.00025 21.7 0.7 1 23 950 972 950 972 0.96 27 27 0.00031 0.0067 17.2 4.7 1 21 978 998 978 1000 0.94
Sequence Information
- Coding Sequence
- ATGTCAGATTATTTGTTTCAAGATGTAAATAATCCTTTGCCAATTAAAGAAGAACCTGAAGAAACATTGGATACAGAATTAATGATTCCTGAAGTAAAAATTAAAATTGAAAATACAATAGCCGCAGAAGTATTAATTAAAGAAGAATCGCCCGAAGAAAGAGATTCCGATTCATCAATTGACTATAAAAGTGAGGAAACACCTTTTATCTGTAACATTTGTGATAAAAAATTTACTCAAAAGAAAAGTTTAACTGAGCATAAACGAATTCATACTGGAGAAAAGCCGTTTTCATGTGACGTGTGTGGTAAAAGTTTTACTCAACCAAGTACTTTAGTTAAACATAAACGAATTCATAACTCTACGCAAAAGAAAACATCTAAACGGGTTCATCACGCACCGAAAGGACATTATCCATGTGATGTTTGTGATAAAATATTTCTCTATCAGAGTAAATTGTTAATTCATAAACGAATCCATAGTCGAGAACAACATTTTGCATGTGATTTTTGTGGCAAAGCTTTTGCACAAAAAATCAATTTAATTAGTCATAAAAGAATTCATACGGGTGAAAAACCTTTTTCGTGTGAATATTGTGGAAAGTGTTTTACGAATCAAAGTAGTTTAGTCAATCATAAACGAATTCATACAGGTGAAAAACCGTTTGCATGTGAAGCTTGTGGAAAAACTTTCGTTCAACGGAGTAATTTAGTCGAACATAAACGGATTCATTCCGGAGAACGACCTTATGCATGTGAAATATGTGGTAAAACATTTACGTTAAATAGCAATTTAACGAAACATAAACGAATTCATTTGGGTGAAAAACGATTTGGTTGTGATGTGTGTGGAAAAAGATATAACCATCAAGCTAATTTAATAAATCATCAACGGATTCATACGGGTGAAAAACCATTTTCATGTGACTTATGTGACAAAACTTTTATGTACCAACCGAGTTTAATTAATCATAAACGATTACATAATGGTGAACATATTTTTAAGGATAGAACATTAGTTAAACGCAGACCAAATCCAAATAGTGAAAGGCCATTTTCATGTGATGTTTGTGGGAAAACATTTGTGCAAAAACAAACGTTAATCGAACATAAACGACTTCATACAGGTGAAAAACCATTCGCTTGTGAGGTTTGTGGTAAACGATTTACAAGACAAAGTAGTTTTGTTAATCATAAACGAATTCATACGGGTGAAAAACCATTTTCCTGCGATGTTTGTGGTAAAACATACACGAATCAAAGTAGTGTTGTTGAACATAAACGAACACATACAGGAGAAAAACCATTTTCCTGTGATATTTGTAGTAAATCATTTACGCAACGAAGTAATTTAGTAGAACATACACGAATACATACTGGAGAAAGACCTTTTCCATGTAGCATTTGCGGCAAATCATTTAGTTCGAATAGTAATTTAACGAAACACAAACGGATTCACACCGGGGAAAAACCTTTTACGTGTGACGTTTGTAATAAAACTTTCACTCATGAATATAATTTAATTGGTCATAAACGAATTCATGATGAGCAGCAAACATTCTCCAATATCCAACAAAATATTTTGGTTAGTGAAAAACCAATTCATACGGGAGAACAACTTTTCTCGAGTGATGTTTGTGATGTAACCTTCAGTGAAGGAAATAGCAGTGCTGGGGAAGCTGAAGACAGTAAAGAACCACTGTCTTCTAGTCCTTTAATGCAAGCTCCTGAAAGTTCTCATGCATCAATCACAATCTCCATTAAATCTTCTCCTAGTGGAAATGATGGCACTCGTCCGATCTTTGAGGAACCTCCTGATCCACAGCATCCCCTTCCTTATTACATGTCTAATATTCGATTCCCCGATTTTCGTGGTGCCGAAGGTACGTTCCCAATATGGATGCGCCAACAAATGGCAGAAATTGTACAAAAAACTCAACCCAAAACGGAAATTGAACCACCCCCCGAAATTCAAGAATCTAAACCAATTAAAATTGAGGAAAATATGTTTTCTTGTGAATATTGTGATGAAATGTTTTCCGATAAACCCACTTTAATTGAACATAAAAAAATTCATGCAGGAGAAAAATCTTTAACGTGTGAGGTTTGCAGTAAAACATTTACCACTCAAGCAAATTTAGCGAAACATGAACAAGTTCACACTGTGGAGAGACCTTTCTCTTGTGATGTTTGTGGAAAAGCGTTTATTAAACGAAGCACTCTAGTTGAACATCAACGAATTCATACTGGAGAAAGACCTTTCTCTTGTGATCAATGTGGGAAGACATTTAGCTCTCGATGGAATTTAACGAAGCATTTACGAATTCATACCGGTGAAAAGCCATTTTCATGTGACGTATGTGGTAAAACATTTGGATCCAAATGGAATTTAACGAAACACAAACGAACCCATACTGGAGTTAAACCATATGCATGCGATGTTTGTGATAAAACATTTGCCCGAAAACATAGTTTAATTGAGCATAAACGATTCCATACCGGGGAACAACTCTTCCCGTGTGATGTTTGTGATAAAATTTTTACACAACAAATGAGCTTAGCGAATCACAAACGAATTCATACCGGAGAGAAACCATTTATTTGTGATATCTGTGATAAAACATTTAATCAACAAGGTAGTTTAATTCAGCATAGACGTATTCATACAGGAGAACAACAGTTCCCATGTTACGTTTGTAATAAAACGTTTTCACAGAAAATAAATTTAATTAATCATACACGAATTCATACGGGGGAAAAACCGTTTGCTTGTGATTTTTGTGAGAAAACTTTTACCAATAGAAATAGTTTAGTTGAACATAAACGATTGCATACGGGTGAAAGACCATATTTATGTGATGTTTGTGGGAAATCGTTTACGCAACGTACAAAGTTAGTTGAACATAGACGAATTCATACGGGAGATAAACCATATGCGTGTCATATTTGTGATAAAAGATTTGCATTAAATAGTAACTTAACTAGACATAAACGATGTCACACTGGAGATAAACCTAGATTTAAATCGTTAGCATTTTGCTAA
- Protein Sequence
- MSDYLFQDVNNPLPIKEEPEETLDTELMIPEVKIKIENTIAAEVLIKEESPEERDSDSSIDYKSEETPFICNICDKKFTQKKSLTEHKRIHTGEKPFSCDVCGKSFTQPSTLVKHKRIHNSTQKKTSKRVHHAPKGHYPCDVCDKIFLYQSKLLIHKRIHSREQHFACDFCGKAFAQKINLISHKRIHTGEKPFSCEYCGKCFTNQSSLVNHKRIHTGEKPFACEACGKTFVQRSNLVEHKRIHSGERPYACEICGKTFTLNSNLTKHKRIHLGEKRFGCDVCGKRYNHQANLINHQRIHTGEKPFSCDLCDKTFMYQPSLINHKRLHNGEHIFKDRTLVKRRPNPNSERPFSCDVCGKTFVQKQTLIEHKRLHTGEKPFACEVCGKRFTRQSSFVNHKRIHTGEKPFSCDVCGKTYTNQSSVVEHKRTHTGEKPFSCDICSKSFTQRSNLVEHTRIHTGERPFPCSICGKSFSSNSNLTKHKRIHTGEKPFTCDVCNKTFTHEYNLIGHKRIHDEQQTFSNIQQNILVSEKPIHTGEQLFSSDVCDVTFSEGNSSAGEAEDSKEPLSSSPLMQAPESSHASITISIKSSPSGNDGTRPIFEEPPDPQHPLPYYMSNIRFPDFRGAEGTFPIWMRQQMAEIVQKTQPKTEIEPPPEIQESKPIKIEENMFSCEYCDEMFSDKPTLIEHKKIHAGEKSLTCEVCSKTFTTQANLAKHEQVHTVERPFSCDVCGKAFIKRSTLVEHQRIHTGERPFSCDQCGKTFSSRWNLTKHLRIHTGEKPFSCDVCGKTFGSKWNLTKHKRTHTGVKPYACDVCDKTFARKHSLIEHKRFHTGEQLFPCDVCDKIFTQQMSLANHKRIHTGEKPFICDICDKTFNQQGSLIQHRRIHTGEQQFPCYVCNKTFSQKINLINHTRIHTGEKPFACDFCEKTFTNRNSLVEHKRLHTGERPYLCDVCGKSFTQRTKLVEHRRIHTGDKPYACHICDKRFALNSNLTRHKRCHTGDKPRFKSLAFC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -