Basic Information

Insect: Chrysoperla carnea
Gene Symbol: -
Assembly: GCA_905475395.1
Location: FR997758.1:22325096-22328794[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 25 3.3e-05 0.00072 20.3 2.3 1 23 108 130 108 130 0.98

2 25 6.8e-06 0.00015 22.4 0.7 1 23 136 158 136 158 0.98

3 25 9.9e-05 0.0021 18.8 0.3 1 23 164 186 164 186 0.97

4 25 3.5e-07 7.5e-06 26.5 3.6 1 23 192 214 192 214 0.98

5 25 1.1e-06 2.3e-05 25.0 1.0 1 23 220 242 220 242 0.98

6 25 1.6e-07 3.5e-06 27.5 1.2 1 23 248 270 248 270 0.98

7 25 2e-05 0.00043 21.0 1.4 1 20 276 295 276 298 0.93

8 25 1.1e-07 2.5e-06 28.0 0.8 1 23 304 326 304 326 0.98

9 25 1.1e-06 2.3e-05 25.0 1.0 1 23 332 354 332 354 0.98

10 25 3.8e-07 8.1e-06 26.4 2.8 1 23 360 382 360 382 0.98

11 25 1.3e-07 2.8e-06 27.8 1.0 1 23 388 410 388 410 0.98

12 25 2e-05 0.00043 21.0 1.4 1 20 416 435 416 438 0.93

13 25 3.6e-05 0.00079 20.1 0.3 4 23 447 466 447 466 0.96

14 25 2e-05 0.00043 21.0 1.4 1 20 472 491 472 494 0.93

15 25 1.2e-06 2.5e-05 24.8 2.0 1 23 500 522 500 522 0.98

16 25 4.7e-08 1e-06 29.2 1.8 1 23 528 550 528 550 0.98

17 25 1.2e-06 2.5e-05 24.8 2.0 1 23 556 578 556 578 0.98

18 25 4.7e-08 1e-06 29.2 1.8 1 23 584 606 584 606 0.98

19 25 1.2e-06 2.5e-05 24.8 2.0 1 23 612 634 612 634 0.98

20 25 1.1e-06 2.3e-05 24.9 2.0 1 23 640 662 640 662 0.98

21 25 4.2e-06 9.2e-05 23.1 6.1 1 23 668 690 668 690 0.98

22 25 7.1e-08 1.5e-06 28.7 0.8 1 23 696 718 696 718 0.98

23 25 7.7e-08 1.7e-06 28.6 2.0 1 23 724 746 724 746 0.98

24 25 2e-05 0.00043 21.0 1.4 1 20 752 771 752 774 0.93

25 25 4.2e-06 9.2e-05 23.1 6.1 1 23 780 802 780 802 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	25	3.3e-05	0.00072	20.3	2.3	1	23	108	130	108	130	0.98
2	25	6.8e-06	0.00015	22.4	0.7	1	23	136	158	136	158	0.98
3	25	9.9e-05	0.0021	18.8	0.3	1	23	164	186	164	186	0.97
4	25	3.5e-07	7.5e-06	26.5	3.6	1	23	192	214	192	214	0.98
5	25	1.1e-06	2.3e-05	25.0	1.0	1	23	220	242	220	242	0.98
6	25	1.6e-07	3.5e-06	27.5	1.2	1	23	248	270	248	270	0.98
7	25	2e-05	0.00043	21.0	1.4	1	20	276	295	276	298	0.93
8	25	1.1e-07	2.5e-06	28.0	0.8	1	23	304	326	304	326	0.98
9	25	1.1e-06	2.3e-05	25.0	1.0	1	23	332	354	332	354	0.98
10	25	3.8e-07	8.1e-06	26.4	2.8	1	23	360	382	360	382	0.98
11	25	1.3e-07	2.8e-06	27.8	1.0	1	23	388	410	388	410	0.98
12	25	2e-05	0.00043	21.0	1.4	1	20	416	435	416	438	0.93
13	25	3.6e-05	0.00079	20.1	0.3	4	23	447	466	447	466	0.96
14	25	2e-05	0.00043	21.0	1.4	1	20	472	491	472	494	0.93
15	25	1.2e-06	2.5e-05	24.8	2.0	1	23	500	522	500	522	0.98
16	25	4.7e-08	1e-06	29.2	1.8	1	23	528	550	528	550	0.98
17	25	1.2e-06	2.5e-05	24.8	2.0	1	23	556	578	556	578	0.98
18	25	4.7e-08	1e-06	29.2	1.8	1	23	584	606	584	606	0.98
19	25	1.2e-06	2.5e-05	24.8	2.0	1	23	612	634	612	634	0.98
20	25	1.1e-06	2.3e-05	24.9	2.0	1	23	640	662	640	662	0.98
21	25	4.2e-06	9.2e-05	23.1	6.1	1	23	668	690	668	690	0.98
22	25	7.1e-08	1.5e-06	28.7	0.8	1	23	696	718	696	718	0.98
23	25	7.7e-08	1.7e-06	28.6	2.0	1	23	724	746	724	746	0.98
24	25	2e-05	0.00043	21.0	1.4	1	20	752	771	752	774	0.93
25	25	4.2e-06	9.2e-05	23.1	6.1	1	23	780	802	780	802	0.98

Sequence Information

Coding Sequence: ATGGAAAATTATATTAATGAAATAAATAATCATTTGTTTACCAATGAAAAAAACATTAAATTAGAAAACAAATTAAATACTGAATTTATGATAAAAGATGAAATATTTGAAGAAAATGGAATAATAGAACCTGAATTTATTAAAGACGAAATAATAGAAGAGAGTGTTGCAACAAAAAATACCAAAATAAATTTAAATGAACAATTGTTGATGGACAATTATGAAAATATTAAACTTGAACAACAATTACACACTGAATTAATTATTAAGAACGATGAAAATGATTTAGAATATTTACAAAATGACAACGAAAACAAATTTTTTTCATGCAGTGATTGTCATGAAACATTTGAAACTAAACGAAGTCTAATTATTCATCGACGAATTCATAATGAAGAAAAGAATTATTCATGTGAAGATTGTGGTAAAACATTTGTTTTGAAGAGATCTTTAATTCTACACCAACGAAATCACAATGGAGACAAACTTTTTTCATGTGATATTTGTCAAAAAGCATATGCTCAGCTATCTTATTTAAAAGCACACAAACTAATTCACACTGGGGAAATGCGTTTTTCATGTAAAGATTGTGATAAATCATTTACTCAAAAAACCCATTTAATTCAACACTTACGAATTCATACTGGAGAAAAACCTTTTTCATGTAAAGATTGCGATAAATCATTTACTCAAAAAAACAGTTTAATTGGACACTTAAGAATTCACACTGGAGAAAAACCTTTTTCATGTAAAGATTGTGATAAATCATTTAGTTTGAAAAGCAATTTAATTCAACACTTACGAGTTCACACTGGAGAAAGACCTTTTTCATGTAAAGATTGTGATAAATCATTTACTGAAAGAAGCCATTTAATTCAACACTTACCAATTCATACTGGAGAAAAACCTTTTTCATGTAATGATTGTGATAAATCATTTACTGTAAGAAGCAATTTAATTCAACACTTACGAATTCATACTGGAGAAAAACCTTTTTCATGTAAAGATTGCGATAAATCATTTACTCAAAAGAACAGTTTAATTGGACACTTACGAATTCACACTGGAGAAAAACCTTTTTCATGTAAAGATTGTGATAAATCATTTAGTTTGAAAAGCAATTTAATTCATCACTTACGAGTTCACACTGGAGAAAAACCTTTTTCATGTAAAGATTGTGATAAATCATTTACTGTAAGAAGCAATTTAATTCAACACTTAAGAATTCATACTGGAGAAAAACCCTTTTCATGTAAAGATTGTGATAAATCATTTACTGAAAGAAGCCATTTAATTCAACACTTACCAATTCATACTGGAGAAAAACCTTTTTCATTTAAAGATTGTGATAAATCATTTACTGTAAGAAGCAATTTAATTCAACACTTAAGAATTCATACTGGAGAAAAACGTTTTTCATGTAAAGATTGTGATAAATCATTTACTGAAAGAAGCCATTTAATTCAACACTTACCAATTCATACTGGAGAAAAACCTTTTTCATGTAAAGATTGTGATAAATCATTTATTGAAAGAAGCCATTTAATTCAACACTTAAGAATTCATACTGGAGAAAAACCTTTTTCATGTAAAGATTGTGATAAATCATTTACTTATAAAAGCAATTTAATTCAACACTTACGAGTTCACACTGGAGAAAAACCTTTTTCATGTAAAGATTGTGATAAATCATTTATTGAAAGAAGCCATTTAATTCAACACTTAAGAATTCATACTGGAGAAAAACCTTTTTCATGTAAAGATTGTGATAAATCATTTACTTATAAAAGCAATTTAATTCAACACTTACGAGTTCACACTGGAGAAAAACCTTTTTCATGTAAAGATTGTGATAAATCATTTATTGAAAGAAGCCATTTAATTCAACACTTAAGAATTCATACTGGAGAAAAACCTTTTTCATGTAAAGATTGCGATAAATCATTTAGTTTGAAAAACAGTTTAAATAAACACTTACGAGTACACACTGGAGAAAAACCTTTTTCATGTAAAGATTGTGATAAATCATTTACTCAAAAATGCCATTTAATTCAACACTTACGAATTCACACTGGAGAAAAACCTTTTTCATGTAAAGATTGTGATAAATCATTTACTGTAAGAAGCAATTTAATTCAACACATAAGAATTCATACTGGAGAAAAACCTTTTTCATGTAAAGATTGCGATAAATCATTTAGTTTGAAAAGCAATTTAAATAAACACTTACGTGTTCACACTGGAGAAAAACCTTTTTCATGTAAAGATTGTGATAAATCATTTACTGAAAGAAGCCATTTAATTCAACACTTACCAATTCATACTGGAGAAAAACCTTTTTCATGTAAAGATTGCGATAAATCATTTACTCAAAAATGCCATTTAATTCAACACTTACGAATTCACACTGGAGAAAAACCTTTTTCATCAAGATTAGGATCCATACCATGGACATAG
Protein Sequence: MENYINEINNHLFTNEKNIKLENKLNTEFMIKDEIFEENGIIEPEFIKDEIIEESVATKNTKINLNEQLLMDNYENIKLEQQLHTELIIKNDENDLEYLQNDNENKFFSCSDCHETFETKRSLIIHRRIHNEEKNYSCEDCGKTFVLKRSLILHQRNHNGDKLFSCDICQKAYAQLSYLKAHKLIHTGEMRFSCKDCDKSFTQKTHLIQHLRIHTGEKPFSCKDCDKSFTQKNSLIGHLRIHTGEKPFSCKDCDKSFSLKSNLIQHLRVHTGERPFSCKDCDKSFTERSHLIQHLPIHTGEKPFSCNDCDKSFTVRSNLIQHLRIHTGEKPFSCKDCDKSFTQKNSLIGHLRIHTGEKPFSCKDCDKSFSLKSNLIHHLRVHTGEKPFSCKDCDKSFTVRSNLIQHLRIHTGEKPFSCKDCDKSFTERSHLIQHLPIHTGEKPFSFKDCDKSFTVRSNLIQHLRIHTGEKRFSCKDCDKSFTERSHLIQHLPIHTGEKPFSCKDCDKSFIERSHLIQHLRIHTGEKPFSCKDCDKSFTYKSNLIQHLRVHTGEKPFSCKDCDKSFIERSHLIQHLRIHTGEKPFSCKDCDKSFTYKSNLIQHLRVHTGEKPFSCKDCDKSFIERSHLIQHLRIHTGEKPFSCKDCDKSFSLKNSLNKHLRVHTGEKPFSCKDCDKSFTQKCHLIQHLRIHTGEKPFSCKDCDKSFTVRSNLIQHIRIHTGEKPFSCKDCDKSFSLKSNLNKHLRVHTGEKPFSCKDCDKSFTERSHLIQHLPIHTGEKPFSCKDCDKSFTQKCHLIQHLRIHTGEKPFSSRLGSIPWT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -