Ccar003650.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Chrysoperla carnea
Gene Symbol
-
Assembly
GCA_905475395.1
Location
FR997756.1:82649913-82653940[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 38 4.4e-06 9.4e-05 23.0 3.0 1 23 118 140 118 140 0.98
2 38 3e-05 0.00064 20.4 4.2 1 23 146 168 146 168 0.98
3 38 0.00017 0.0037 18.0 0.2 1 23 174 196 174 196 0.98
4 38 0.00081 0.018 15.9 3.9 1 20 203 222 203 225 0.94
5 38 0.00021 0.0045 17.7 3.3 1 23 231 253 231 254 0.95
6 38 0.00012 0.0026 18.5 0.7 2 23 260 281 259 281 0.97
7 38 0.00053 0.011 16.5 2.1 1 23 287 309 287 309 0.98
8 38 4.8e-05 0.001 19.7 1.1 1 23 315 337 315 337 0.97
9 38 0.00046 0.0099 16.7 2.1 1 23 343 366 343 366 0.97
10 38 3.7e-06 8e-05 23.3 0.9 1 23 373 395 373 395 0.98
11 38 7.9e-05 0.0017 19.1 5.0 1 23 401 423 401 423 0.98
12 38 0.00021 0.0046 17.7 1.6 1 23 428 450 428 450 0.98
13 38 6.8e-06 0.00015 22.4 1.9 1 23 456 478 456 478 0.98
14 38 2.1e-05 0.00046 20.9 2.7 1 23 484 506 484 506 0.98
15 38 5.1e-06 0.00011 22.8 4.4 1 23 512 534 512 534 0.98
16 38 0.0088 0.19 12.6 0.4 1 23 540 562 540 562 0.97
17 38 0.027 0.58 11.1 2.0 1 23 591 613 591 613 0.97
18 38 0.002 0.043 14.7 0.2 5 23 618 636 618 636 0.97
19 38 0.00031 0.0067 17.2 2.5 2 23 670 691 669 691 0.97
20 38 8.2e-05 0.0018 19.0 1.3 2 23 745 766 744 766 0.97
21 38 7.4e-07 1.6e-05 25.5 1.0 1 23 819 841 819 841 0.98
22 38 0.0017 0.038 14.8 1.3 1 23 869 891 869 891 0.97
23 38 0.00017 0.0038 18.0 0.8 1 23 897 919 897 919 0.98
24 38 4.2e-05 0.0009 19.9 0.6 1 23 925 947 925 947 0.98
25 38 4.2e-05 0.00091 19.9 2.1 1 23 953 975 953 975 0.98
26 38 0.0016 0.035 14.9 0.8 1 23 981 1003 981 1003 0.98
27 38 0.00028 0.0061 17.3 1.8 2 23 1010 1031 1009 1031 0.97
28 38 0.00013 0.0027 18.4 2.7 1 23 1037 1059 1037 1059 0.98
29 38 0.00036 0.0077 17.0 2.8 2 23 1065 1086 1065 1086 0.97
30 38 7.4e-05 0.0016 19.2 2.3 1 23 1092 1114 1092 1114 0.97
31 38 0.00079 0.017 15.9 1.2 1 23 1121 1144 1121 1144 0.95
32 38 0.0025 0.055 14.3 1.0 1 23 1150 1174 1150 1174 0.91
33 38 0.0021 0.046 14.6 4.0 1 23 1175 1197 1175 1197 0.97
34 38 1e-05 0.00022 21.9 0.8 1 23 1203 1225 1203 1225 0.98
35 38 8.5e-06 0.00018 22.1 1.5 1 23 1231 1253 1231 1253 0.97
36 38 0.0016 0.035 14.9 0.4 2 23 1260 1281 1259 1281 0.94
37 38 1.7e-05 0.00037 21.1 3.9 1 23 1287 1309 1287 1309 0.99
38 38 0.00017 0.0037 18.0 0.2 1 23 1315 1337 1315 1337 0.95

Sequence Information

Coding Sequence
ATGTCAAATCTTCTATTTCAAAATACGAACGATCCTTTGTTTATTAAAGATAAAAACATTAAAATTGAGCATGTAGATAAAGAATTATTGGATGAAGATATAAAAATAAAAAATGATTCGTTTGAAACAGAACAACTTAAAATTAAAAAGGAAAACATAAATAATGAAGAAATGCACTCGGAAATAATAATTAAAGAAGAAAACAAAAACTTTGAAAACGAATTACCCACAGAAATAACTACGAATGATAACATTAAAACAGAACAAGAATTACACACGGAGGTAATTATTAAAGAAGAAATACAAGAGAAAAGTGTTTTACTTGAACATAAAACAACTCATGAAAAACCATATTCATGTGAAGTATGTGGTAAATCATTTACTCGACCACATCATTTAGTTCAACATAAACAAGTTCATACTGGAGAAAAACCTTTTTCATGTGATATTTGTAATAAAAAATACACACGGAAATACAGTTTAAATCAACATAAAAAGACTCATATGGGACAAAAACCTTTTGTATGCGATATTTGTGGTAAACGATTTACTTGGCAAAGCGCTTTAACTGAACATAAACAAATTCACGATAGAGTTCAACATACATTTGTGTGCGATGTTTGTGATAGAACATTTACTCATCATCATAATTTGATCAAACATAAATGGATTCACGATAAACAGAAGTGTTTTCCTTGTGACATTTGTGATAAGACATTTACTTCCCATCTTAGTTTAGTTCAACATAAACGTATTCATCACGGAGGAACGTATATTTCTTGTGATATTTGTGACAAAACATTTTCTTATCGAAATAAATTGGTTGAACATAAACGAATTCATACTGGAGAAATGCCGTATTCATGTTCCATTTGTAGTAAATCATTTAACCGACAAACCACATATGCACTTCACAAGAAAATTCATTCTCAAGAAAAGTCGTTTGCATGTGATGTTTGTGATAAAACATTTACACTTCAACAGTATTTAATACAACATAAACGAACGCATACTGGAGAAAAACCATTTTCATGTGACTTTTGTACTCAGTCATTTTCACAGCTAGCCAATTTAATTAAACATAAACAACGGAAGCATACTGGAGAAGTTAAACCTTTTGTATGTGATAATTGTGGTAAAATATTTACTGAAAAATCCACTTTAATGCGACATAAAAGAATCCATTCGGGGGAAAAGCCATTTTCATGTGATGTTTGTAACAAATCATTTACCCTGAAACAGCATTTGACCCAACATAAACGAACTCACATTCCACAATCTTTTTCATGTAATGTTTGTGACAAAGCATTTACTCATGAGATCAAACTAGTTCAGCATAAACGTATTCACATTAAAGGAAAATATTTCTCATGTGATGTTTGCGATAAATCATTTACCCAGCGTAAAAATTTGTATGACCATAAACGAGTTCATACTGGAGAAAAGCCATTTTCATGTGATATCTGTAATAAAAGATTTAATCGACAAAACACATTAGTTCGGCACAAACAAACTCATAGTGGAGAGAGACCTTTTTCATGTGACGGTTGTGATAAAACATTTACACAACCACATCATTTAGCTACACATAAACGAACACATGCTGCACTAAAGATTTTTTCATGTGATTTTTGTGAACAAATATATTCTGATCAAAATAGTTTGATTGAACATAAACAAATCCATATCGCAGAAATACCGTTTTCATGTGATATTTCTAATAACAAATTTAATGGACAAGTTAAGCAAATGAAAACTGAAGAGAAATATTTTTCATGCGATGCTTGTGATAAAAAATTTATCTTCCAACATGATTTAGATCAACACAAAGAAATGCATACAGCAGGTATAGTTTGCAATAAAACATTTTCCGAGCAAGATAATTTGGTTCAACATAAACGAGTTCATACTGGGGTAATGCAGTTTTCATGTGATATTTATAACACATTTAATGAACAAAGCACAATAGAACCACCCAAACAAATTAAAATTGAAGAGGAATCTATTTCTTGCGATTTTTGTGATAAAACATTTACATTAAAACATGAATTAATCGAACATAAACGAACACATGCTACAGTGAAATCTTTGCAATGTGATTATTATGACAAAATATTGACCCAACAAAAAAATTTGGTTGAATATCAAGAAGAAATGCCGTATAATACGAAATTTACTGGACAGAGCTCAATGGGACCACTTAAACAAAATAAAACTGAAGAGAAATCTATTTCTTGTGATGATTGTGACAAAACATTTACATTAAAACATGAATTAATCGAACATAAACGAATACATGCTGCAGTGAAATCTTTTCAATGTGATTATTATGACAAAACATTAACCCAGCAAAATAATTTAGTTGAACATAAAAAAGAAATGCCGTATATTACGACATTTACTGGGAAGTGCACAATAAGACCACTTAAACAAAATAAAACTGAAGGGAAATATTTTTCATGCGATGATTGTGGTAAAGCATTTTCCCAGCAAAAAAATTTGTTTGAACATAAACGAATCCATACTGAAGAAATACAGTTTTCATGTAATAATTTTAATAACACATCTTATGTACAAGGCACATGTAAAACTGAAGAAAAATCGTTTCCTTGCGATGCTTGTGATCAAATATTTACATCGCAACAGCATTTAGTTCAACATAAACGAAATCATGCTACACGGAAATGTTTTACATGTAATATTTGCGACAAAACATTTACTTTGGAAATCTATTTAGTTCAACATAAACGTATTCATACTGAAAAAACAAATTTTTCATGTGATGTGTGTAACAAAAAATTTTCCGAAAAAAATAATTTAATTGAACATGAACGAGTTCATAAAGGAGAAATGCCATTTTCATGTGATATTTGTGATAAGAAGTTTTATCAAAAACGTTCATTAGTTCGACACAAACAAATTCATACCGGAAAAAGACCTTTTTCATGCGATGTTTGTAAGAAAACATATTCTGAGCGAAGGTATTTGGTTGAACACGAACGAGTTCATACTGGAGAAAGGCCGTTATCATGTGAGTTTTGTAATAAAAAGTTTAATCGACAAGGTACACTATCAGCACACAAACAAACTCATACTGGACAGAAACCATATTCATGCGATGATTGTGACAAAACATTTACCAAACGAAGAAAATTGTTCGAACATAAACAAGTTCATATTGCGAAAATACGGTCATGTAATATTTGTGATAAAAAATTTAATCGGCGGTACAAATTAGTACAACACAACAAAACTCACACTGAAGAGAGATCTTATTCATGCGAAGTTTGCGGAAAAACTTTTAAACGGCAACATAGTTTATATGGACATAAATTAATACATAGTGCTGTCACAAAGTCTTTTCCATGTGAAGTTTGTGACAAAAAATTTACACTTCGAAGATATTTGCTTAGACACAAAAAAGAAATACATACTGGAAAAATGATGTTTTCATGTGATTTGTGTCGTGAAACATATGATCGTAAAAAAGAATTGATACGACATAAACGAATAGCGAAACATTTTGCATGCAAAGTTTGTAATAAAACATTTAACATGAACCATTATTTACTTCAACATAAACGTTTGCATAATAAAGAAGCACAGTTTTCATGTGATGTTTGTGATAAAACATTTTCTCAGCGAAATGGTTTAGCGGAACACAAACGTACGCATACCGGGGAAAAACCGTTTGCGTGTGATATTTGCAATAAAACATTTAGTCGACAAAGCACATTTGCAAAACATAAACAAATTCATGCTGGATATAAACCTTTTTTATGTGATGCTTGTGATAAAACATTTATAGATCTACGTCAATTAGTTCAACATAAACGCGTGCACACGGGAGAGAAACCTTATTCATGTGACATTTGTAAGAAATCGTTTAGTCATCTATCTACTTTAGTCACACATAAACGGACGCATACAGGAGAAAAACTTTTTTTATGTGATATTTGTGGAGAACAATTTATTCGGCCAAGCTTTTTAATTCGACATAAACAAATCCATTTAGTATAA
Protein Sequence
MSNLLFQNTNDPLFIKDKNIKIEHVDKELLDEDIKIKNDSFETEQLKIKKENINNEEMHSEIIIKEENKNFENELPTEITTNDNIKTEQELHTEVIIKEEIQEKSVLLEHKTTHEKPYSCEVCGKSFTRPHHLVQHKQVHTGEKPFSCDICNKKYTRKYSLNQHKKTHMGQKPFVCDICGKRFTWQSALTEHKQIHDRVQHTFVCDVCDRTFTHHHNLIKHKWIHDKQKCFPCDICDKTFTSHLSLVQHKRIHHGGTYISCDICDKTFSYRNKLVEHKRIHTGEMPYSCSICSKSFNRQTTYALHKKIHSQEKSFACDVCDKTFTLQQYLIQHKRTHTGEKPFSCDFCTQSFSQLANLIKHKQRKHTGEVKPFVCDNCGKIFTEKSTLMRHKRIHSGEKPFSCDVCNKSFTLKQHLTQHKRTHIPQSFSCNVCDKAFTHEIKLVQHKRIHIKGKYFSCDVCDKSFTQRKNLYDHKRVHTGEKPFSCDICNKRFNRQNTLVRHKQTHSGERPFSCDGCDKTFTQPHHLATHKRTHAALKIFSCDFCEQIYSDQNSLIEHKQIHIAEIPFSCDISNNKFNGQVKQMKTEEKYFSCDACDKKFIFQHDLDQHKEMHTAGIVCNKTFSEQDNLVQHKRVHTGVMQFSCDIYNTFNEQSTIEPPKQIKIEEESISCDFCDKTFTLKHELIEHKRTHATVKSLQCDYYDKILTQQKNLVEYQEEMPYNTKFTGQSSMGPLKQNKTEEKSISCDDCDKTFTLKHELIEHKRIHAAVKSFQCDYYDKTLTQQNNLVEHKKEMPYITTFTGKCTIRPLKQNKTEGKYFSCDDCGKAFSQQKNLFEHKRIHTEEIQFSCNNFNNTSYVQGTCKTEEKSFPCDACDQIFTSQQHLVQHKRNHATRKCFTCNICDKTFTLEIYLVQHKRIHTEKTNFSCDVCNKKFSEKNNLIEHERVHKGEMPFSCDICDKKFYQKRSLVRHKQIHTGKRPFSCDVCKKTYSERRYLVEHERVHTGERPLSCEFCNKKFNRQGTLSAHKQTHTGQKPYSCDDCDKTFTKRRKLFEHKQVHIAKIRSCNICDKKFNRRYKLVQHNKTHTEERSYSCEVCGKTFKRQHSLYGHKLIHSAVTKSFPCEVCDKKFTLRRYLLRHKKEIHTGKMMFSCDLCRETYDRKKELIRHKRIAKHFACKVCNKTFNMNHYLLQHKRLHNKEAQFSCDVCDKTFSQRNGLAEHKRTHTGEKPFACDICNKTFSRQSTFAKHKQIHAGYKPFLCDACDKTFIDLRQLVQHKRVHTGEKPYSCDICKKSFSHLSTLVTHKRTHTGEKLFLCDICGEQFIRPSFLIRHKQIHLV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-