Ccar011675.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Chrysoperla carnea
Gene Symbol
-
Assembly
GCA_905475395.1
Location
FR997755.1:98662182-98688436[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 40 4.2e-06 9e-05 23.1 1.1 1 23 52 75 52 75 0.96
2 40 7.9e-05 0.0017 19.1 0.7 2 23 82 103 81 103 0.97
3 40 4.6e-07 9.9e-06 26.1 0.4 1 23 109 131 109 131 0.98
4 40 3.4e-05 0.00074 20.2 1.0 1 23 137 159 137 159 0.98
5 40 0.0072 0.16 12.9 0.3 1 23 165 187 165 187 0.97
6 40 1.1e-06 2.4e-05 24.9 1.4 1 23 193 216 193 216 0.98
7 40 1.4e-05 0.00029 21.5 0.6 1 23 263 285 263 285 0.97
8 40 2.4e-07 5.2e-06 27.0 0.5 1 23 291 313 291 313 0.97
9 40 0.0011 0.023 15.5 2.1 1 23 319 341 319 341 0.97
10 40 0.00049 0.011 16.6 1.2 1 23 498 520 498 520 0.98
11 40 7.6e-05 0.0016 19.1 1.3 1 23 526 549 526 549 0.96
12 40 4.1e-06 8.9e-05 23.1 1.6 1 23 555 577 555 577 0.98
13 40 0.00017 0.0037 18.0 1.7 1 23 583 605 583 605 0.98
14 40 1.8e-06 4e-05 24.2 0.4 1 23 611 633 611 633 0.97
15 40 7.1e-05 0.0015 19.2 0.5 1 23 639 661 639 661 0.98
16 40 7.1e-05 0.0015 19.2 0.5 1 23 667 689 667 689 0.98
17 40 2.6e-05 0.00056 20.6 1.6 1 23 695 717 695 717 0.92
18 40 0.00066 0.014 16.2 0.8 1 23 723 745 723 745 0.98
19 40 0.0038 0.083 13.8 2.6 1 23 751 773 751 773 0.98
20 40 8.5e-05 0.0018 19.0 0.4 1 23 779 801 779 801 0.98
21 40 0.00013 0.0027 18.4 0.5 1 23 807 829 807 829 0.97
22 40 3.1e-05 0.00066 20.4 2.7 1 23 835 857 835 857 0.98
23 40 0.0023 0.049 14.5 1.1 1 23 863 885 863 885 0.96
24 40 0.00033 0.0072 17.1 5.0 1 23 891 913 891 913 0.98
25 40 2.1e-05 0.00045 20.9 1.0 1 23 919 941 919 941 0.98
26 40 0.00014 0.0031 18.3 0.7 1 23 947 969 947 969 0.96
27 40 6.5e-06 0.00014 22.5 3.1 1 23 975 997 975 997 0.98
28 40 1e-06 2.2e-05 25.0 1.3 1 23 1003 1025 1003 1025 0.98
29 40 0.0015 0.032 15.1 4.3 1 23 1031 1053 1031 1053 0.98
30 40 3.9e-06 8.5e-05 23.2 1.5 1 23 1179 1201 1179 1201 0.98
31 40 2.9e-05 0.00062 20.5 1.8 1 23 1207 1229 1207 1229 0.97
32 40 1.6e-05 0.00034 21.3 3.3 1 23 1235 1257 1235 1257 0.98
33 40 0.0054 0.12 13.3 2.5 2 23 1264 1285 1263 1285 0.91
34 40 0.00011 0.0024 18.6 5.0 1 23 1291 1313 1291 1313 0.97
35 40 8e-05 0.0017 19.1 1.0 1 23 1319 1341 1319 1341 0.97
36 40 0.00087 0.019 15.8 1.3 1 23 1482 1504 1482 1504 0.98
37 40 1.8e-05 0.00039 21.1 1.0 1 23 1510 1532 1510 1532 0.97
38 40 0.0026 0.055 14.3 1.6 2 23 1545 1566 1544 1566 0.94
39 40 1.6e-05 0.00035 21.2 2.0 1 23 1572 1594 1572 1594 0.98
40 40 0.00012 0.0026 18.5 1.7 1 23 1600 1622 1600 1622 0.98

Sequence Information

Coding Sequence
ATGGAAAATAATTTATTTTTTGATGAAAATAATTCTTTGTTTATCAAGGAAGAAAACATTGAATTTGAAGAAGATACAGATTTAACAATCAACAAACAAATAGATCAGAATATTTCAGAACAAGAAGTTCATTCTCAAAATGGAGAAAAACATTTTTCATGTGAAATTTGCGATAAAAAATTTACACAGCAAAGTTCTTTGAGTACCCACATACAACAATTACATGATGAAGATAAACGCCTTTCATGTGAAATTTGCGGTAAAAAATTTAAACGGCTACGCTTTTTGGTTGTACATTTACAAACTCATACTGGAATAAAACCTTTTTCCTGTGAAGTTTGCGGTAAAGCATTTCCACAGCAAAGTTTTCTGATTAGACATTTACGAACGCATTCTGAGGATAAATCTTTTTCATGTGATTCTTGCACCAAAGCATTCAGAACGAAACAGTTGTTAGTTCGACATATTCGAATTCATACTGGAGAAAGACCTTTTACGTGTGATATTTGTATGAAAAGTTTTAATCAAGATAGTGCTTTAGCTCAGCATAAACTTATTCACACTGAAGAAAAACCTTATGTATGTGAAATTTGTGAGAAATCATTTCGTCAAAAAAGTAATTATGTTAAACATAAACGAACTCCTCATACTGGAGGCAAACAATTTTCATGTGAGTTGGTAGAAAATAGAAAACCGTTTTCGTGTAAATTTTGTGGTAAAAAATTTCCATTTCATTGTCGAAGCAATTTTATTGAACATGAACGGATTCATACTGGCGAAAAACCTTTTATCTGTGATATTTGTGATAAACGATTTAATCGTAAAAGTGCTTTAACTCTACATAAACTAGTTCATACCGGGGAAGAACCTTTTGCATGTGATATTTGTGGGAAAACATTTAATCAGCCAGCAAATTTAAGTCGTCATAAAAGAACCCATACGGGACAAGAAAAATTTCCATGTGATAAGTGTCACGTAGGATTTAATCGTAGAAGTAGTTTAGTTCAACATAAACGACTTCACGTCGGAGAAACAGATGGACCGGAAGCTGTTACCAACGAATTATCAGATGAAGCAGAAGAAACAAGTTTTCCAGATGAAATACAAGGTATTAAAAACGAAATAGAAGAAAAAAATATAGATGTAGGAATTAAAATTGAAAGACTTGCAGAAAATGACTCGGTATTAGAAAACGAGATAATAAAAGAAAAAATAGATGAGGAAAATATAGAAGTTGTAAGAATTAAAATAGAAAATGATTCGATAGATGAAAATGAAAGTATTTTAGGGGGTATACACGAAGAAAATGTAGAAGATATAAAAGTAAAAAGTGATCCATCAATTCATGAACAAATGATCGAAAAAGAAGAATTTTTTACAGATAAACATGAAAATATCAAACTGGAACAAAAATTAAATACGGAACTAATCATAAAGGAAGAAATATTCGATGAAAATTCTTTCGAACATCAACAAATTCAAAACAAATATTTTCCATGCGGTTTATGTACGCAAACATTTAATCAGCAAAATTACTATATTCAACATATGCAAACTCATGCTCGGGACAAGCTGTTTCAGTGCGACATTTGTGAGAAGAAATTTACTCAACAAACGAGTTTAAATTATCATGTATCACGTATTCATACCGGAGAAAAACCATTTTCATGCGAAATTTGTGATAAAAAATTTACACAACGAACCAATTTAATCAAGCATAAAATGATTCACACCGGTGAAAAACCTTATACATGTGATATTTGTAATAAAAATTTTAGACAAATAAATTCTTTTAAAAATCATCAATTAATTCATACGGGTGAAAAACCATTTGCATGTAATATTTGTGGAAAAGCATTTAATCGTAAATCTAGTTTAATTCAACATGAACGTCTTCATACCGGAGAAAAACCATTTGAATGTAATATTTGTGGAAAAAAATTTAATCTTAAAGCTACTTTAATTCAACATGAACGTCTTCATACCGGAGAAAAACCATTTGAATGTAATATTTGTGGAAAAAAATTTAATCTTAAAGCTACTTTAATTCAACATGAACGTCTTCATACCGCGGAAGAAACATTTTCATGTGAAATTTGTGATAAAAAATTTAGTCAACGAAGCAGTTTAATCAGACACAAAGTTTTTCACACGGGAGCAAAACCTTATGCATGCGATGTTTGTGGTAAAACTTTTCTATATCAAAACAATTATATTCGACATAAACGGGTACATTCCGGAGAAAAGCCATATTCTTGTGATGTTTGTTTGAAAAGATTTAAGCATCGTATCAGTTTATCGACACATGAACGAATTCATACAGGAGAAAAACCATTTTCATGTGATTTTTGTGATAAAACATTTGGTCAAAAAGCAAGTTTAATTGCGCATAATCGTGTGCACACCGGCGAAAGACCTTTTCGATGTGATTTATGTGATAAAACATTTAGTTATCAGATCGCTTTAATTCAACATAAACTTATTCACACCGGAGAAAAACCATTTTCCTGTAAGTTTTGTGAGAAAACATTTAATCGTAAAGATAGTTTAAATCAACATGAACGTATTCATACGGGGGAAAAACCATTTTCGTGTGATTTATGTGATAAAGCATATAATCATAAAGTTAGTTTAATTCAACATAAGATTCTTCACACTATAGGTAGACCATTTTCATGTGAATTTTGTGAGAAAACATTCAATCGCAAGGATAGTTTAATTCATCACAAACGGTATCATACAAAAGAAAAACTATTTTCTTGTGATTTGTGTGATAGAGTGTTTAATAAAAAAAGCAATTTAATTCAACATAAAAATGTTCATGCCAAGGAAAAACCATTTTCATGTAATGTTTGTGGTAAAGGATTTAATCAACGATTCAGTTTAATTAATCATAAAATGGGCCACACAGGAGAAAAGCCGTTTAAATGCAATGTTTGTGATAAAGGATTTAATCATAAATCAAATTTAGTTCAACATACTCGTTTGCACACTGGAGAGAAACCATTTACATGCGATGTTTGCGATAAAACTTTTACTCAACGGTCCAATTACATTGTACACAGACGAGTTCATACTGGTGAAAAACCATTTTCATGCGATTTTTGTAATAAAAAATTTAGTCATAATTTAAGTTTAATTCAACATAAACGTGTTCACACTGAGAAAATAACTATAAGAGATGATGTTTGCGATGGACATCTTAAACAGCAGATACAAACAATAATTATAAAAAATGAAATCGACGAAAATGCTGCAAACGAACATGAATCAACAAGTGGCGAAGACCCCATCAAACCTGAAATGCAACAGGAAACTTTTGCAACGGATTGTGAACTTATAAAAGAAGAAAGGTGTTTAATAGACCCTAAACTACTTAAAATTGAAATTGTGGAAGAAACTTCTACATTGGAACCTAAACGAATCGGTGAACATGAAAGTATCTTGGAACAATTAAATCCAGAATTAATATTTAAAAACGAAAAACTTGACAAAAAAAATATTCCAGGACAAAACTCTACTCAAAACAAACGTTATCCGTGTGATCTTTGTGGTAAAAGTTTTACCCAACGGACCAATTATAATCAACACAAACGAGTTCATACTGGCGAGAAACCTTTTTCCTGTGATTTATGCGATAAAAAATTTAGTCAGAAGGCTAATTTAACACTACATAAACTTAAACATACAGGAGTAAAACTATTTTCCTGTAATTTTTGCGATAAAACATTTAATCGTAAAGATAATTTTGAACAACATGAACGTAGTCATACTGGGGAAAAACCAGTTTCATGTGATTTGTGTGATAAAACATTTGCTCATCGATCGGGTTTATATAAACATAAATTCTTTCACACTGGAGAAAAACCATTTTCCTGTAAATTTTGTAATAAAACATTTAATCGTAAATTTAATTTAAAATCACATGAACGACTACATACTGGTGAAAAACCATTTTCATGTGATTTGTGTGATAAAGCGTTCAATCAGAAATCCGCATTAATTCAGCATAAGTATCGCCACGCGGAGGAAAAAATGTTTAGAGATGATGGTTGTGATGGAAATTCTGAACAGCAAATACATTCAATAGTTATAAATCCAGAAATCGACAATTATGCTGTAAACGAACATGAATCAACAAGTGGCGAAGACCCCATTAAACCTGAAATGCAAGAAGAAAACGTTAAAACGAATGAAGTTTTAATACTGAATCAGATGCAACAGAAAACTATTGGAACGGATTATGAAGTACCGGAAGACGAAAAGGGCTTAATAGATCCTAAACTAATTAAAATTGAAATTCTCGAAGAAAGTTCTACCTTGCAACGCGAACGAATTGGTGAACATGAAAATATCCTGGAAAAACAATTAACACCAGAATTATTATTTAAAAACAAAAATCTTAATGAAAATGTTTTAAAACAAAATTCTGTTAAACCTGGTTTTTCATGCGATTTTTGTGATAAAAAATTTATTTATAACTTCGCTTTAGTTCGGCATAACCGTGTGCACACTGGAGAAAAACCTTTTTCATGTGATTTATGCGATAAAAAATTTAGGCAGAAGGCCAATTTAATTCAGCATAAACTTGTTCATAACAAGAAAGATACTCATACTCGAAAAAAACCAGTTTCATGTAATTTGTGTGAAAAAACTTTTGCTCATAGATCGGGTTTATATAAACATAAAATTTTGCACACCGGAGAAAAACCATTTTCCTGTAATTTTTGTAATAAAACATTTAATCGTAAAGATAGTTTAATTTCACATGAACGTGTGCATACTGGCGAAAAACTATTTTCATGTGATTTGTGTGGCAAAGGTTTTAATCAAAAACCCAGTTTTACCAAGCATAAACGTCTTCACAGTGATGACAAGACTTTTATAAATGATGGTTGTGATAAAAATCCTGAACAACAAATACATTCAATAGTTATAAACAATGAACATGAATCAACAAGTGGTGAATACCCCATCAAAACTGAAATGCAAGAAGAAAACGTTAAAACGGAGGAAATTTTAATAATGAATTGA
Protein Sequence
MENNLFFDENNSLFIKEENIEFEEDTDLTINKQIDQNISEQEVHSQNGEKHFSCEICDKKFTQQSSLSTHIQQLHDEDKRLSCEICGKKFKRLRFLVVHLQTHTGIKPFSCEVCGKAFPQQSFLIRHLRTHSEDKSFSCDSCTKAFRTKQLLVRHIRIHTGERPFTCDICMKSFNQDSALAQHKLIHTEEKPYVCEICEKSFRQKSNYVKHKRTPHTGGKQFSCELVENRKPFSCKFCGKKFPFHCRSNFIEHERIHTGEKPFICDICDKRFNRKSALTLHKLVHTGEEPFACDICGKTFNQPANLSRHKRTHTGQEKFPCDKCHVGFNRRSSLVQHKRLHVGETDGPEAVTNELSDEAEETSFPDEIQGIKNEIEEKNIDVGIKIERLAENDSVLENEIIKEKIDEENIEVVRIKIENDSIDENESILGGIHEENVEDIKVKSDPSIHEQMIEKEEFFTDKHENIKLEQKLNTELIIKEEIFDENSFEHQQIQNKYFPCGLCTQTFNQQNYYIQHMQTHARDKLFQCDICEKKFTQQTSLNYHVSRIHTGEKPFSCEICDKKFTQRTNLIKHKMIHTGEKPYTCDICNKNFRQINSFKNHQLIHTGEKPFACNICGKAFNRKSSLIQHERLHTGEKPFECNICGKKFNLKATLIQHERLHTGEKPFECNICGKKFNLKATLIQHERLHTAEETFSCEICDKKFSQRSSLIRHKVFHTGAKPYACDVCGKTFLYQNNYIRHKRVHSGEKPYSCDVCLKRFKHRISLSTHERIHTGEKPFSCDFCDKTFGQKASLIAHNRVHTGERPFRCDLCDKTFSYQIALIQHKLIHTGEKPFSCKFCEKTFNRKDSLNQHERIHTGEKPFSCDLCDKAYNHKVSLIQHKILHTIGRPFSCEFCEKTFNRKDSLIHHKRYHTKEKLFSCDLCDRVFNKKSNLIQHKNVHAKEKPFSCNVCGKGFNQRFSLINHKMGHTGEKPFKCNVCDKGFNHKSNLVQHTRLHTGEKPFTCDVCDKTFTQRSNYIVHRRVHTGEKPFSCDFCNKKFSHNLSLIQHKRVHTEKITIRDDVCDGHLKQQIQTIIIKNEIDENAANEHESTSGEDPIKPEMQQETFATDCELIKEERCLIDPKLLKIEIVEETSTLEPKRIGEHESILEQLNPELIFKNEKLDKKNIPGQNSTQNKRYPCDLCGKSFTQRTNYNQHKRVHTGEKPFSCDLCDKKFSQKANLTLHKLKHTGVKLFSCNFCDKTFNRKDNFEQHERSHTGEKPVSCDLCDKTFAHRSGLYKHKFFHTGEKPFSCKFCNKTFNRKFNLKSHERLHTGEKPFSCDLCDKAFNQKSALIQHKYRHAEEKMFRDDGCDGNSEQQIHSIVINPEIDNYAVNEHESTSGEDPIKPEMQEENVKTNEVLILNQMQQKTIGTDYEVPEDEKGLIDPKLIKIEILEESSTLQRERIGEHENILEKQLTPELLFKNKNLNENVLKQNSVKPGFSCDFCDKKFIYNFALVRHNRVHTGEKPFSCDLCDKKFRQKANLIQHKLVHNKKDTHTRKKPVSCNLCEKTFAHRSGLYKHKILHTGEKPFSCNFCNKTFNRKDSLISHERVHTGEKLFSCDLCGKGFNQKPSFTKHKRLHSDDKTFINDGCDKNPEQQIHSIVINNEHESTSGEYPIKTEMQEENVKTEEILIMN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-