Ccar009868.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Chrysoperla carnea
Gene Symbol
-
Assembly
GCA_905475395.1
Location
FR997755.1:9490816-9495809[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 35 0.00029 0.0062 17.3 3.6 2 23 214 235 213 235 0.97
2 35 9.6e-05 0.0021 18.8 0.4 1 23 241 263 241 263 0.92
3 35 7.3e-06 0.00016 22.3 0.3 1 23 269 291 269 291 0.98
4 35 2.3e-06 5e-05 23.9 4.2 1 23 297 319 297 319 0.98
5 35 3.2e-06 6.9e-05 23.5 1.8 1 23 325 347 325 347 0.97
6 35 1.4e-05 0.0003 21.4 3.8 1 23 421 443 421 443 0.98
7 35 1.8e-05 0.00039 21.1 0.7 1 23 449 471 449 471 0.99
8 35 0.00087 0.019 15.8 5.5 1 23 477 499 477 499 0.99
9 35 0.00016 0.0036 18.1 1.1 1 23 505 527 505 527 0.99
10 35 1.4e-06 3.1e-05 24.6 2.2 1 23 533 555 533 555 0.98
11 35 9.4e-07 2e-05 25.1 3.5 1 23 561 583 561 583 0.99
12 35 1.2e-05 0.00026 21.6 3.9 1 23 614 636 614 636 0.99
13 35 0.00015 0.0031 18.2 1.5 1 23 642 664 642 664 0.99
14 35 2.8e-07 6.1e-06 26.8 1.4 1 23 670 692 670 692 0.99
15 35 5.9e-07 1.3e-05 25.8 0.9 1 23 698 720 698 720 0.99
16 35 9.4e-05 0.002 18.8 5.8 1 23 726 748 726 748 0.97
17 35 0.00038 0.0083 16.9 2.1 1 23 754 776 754 776 0.97
18 35 4.2e-06 9.1e-05 23.1 0.7 1 23 782 804 782 804 0.98
19 35 5e-05 0.0011 19.7 1.1 1 23 1051 1074 1051 1074 0.96
20 35 0.0005 0.011 16.6 6.2 1 23 1080 1102 1080 1102 0.98
21 35 1e-07 2.2e-06 28.2 1.8 1 23 1108 1130 1108 1130 0.98
22 35 2.2e-07 4.8e-06 27.1 0.3 1 23 1136 1158 1136 1158 0.99
23 35 2.7e-07 5.8e-06 26.8 2.0 1 23 1164 1186 1164 1186 0.99
24 35 5.1e-07 1.1e-05 26.0 1.4 1 23 1192 1214 1192 1214 0.99
25 35 3.7e-05 0.0008 20.1 3.3 1 23 1220 1242 1220 1242 0.96
26 35 3.7e-08 8e-07 29.6 0.3 1 23 1248 1270 1248 1270 0.98
27 35 2.5e-05 0.00053 20.7 2.5 1 23 1276 1298 1276 1298 0.99
28 35 9.8e-07 2.1e-05 25.1 1.0 1 23 1304 1326 1304 1326 0.99
29 35 2.6e-06 5.5e-05 23.8 0.9 1 23 1332 1354 1332 1354 0.99
30 35 1.2e-06 2.7e-05 24.7 4.0 1 23 1360 1382 1360 1382 0.99
31 35 2.7e-05 0.00059 20.5 1.2 1 23 1388 1410 1388 1410 0.98
32 35 6.6e-06 0.00014 22.5 3.5 1 23 1416 1438 1416 1438 0.98
33 35 5.1e-06 0.00011 22.8 1.6 1 23 1444 1466 1444 1466 0.99
34 35 3.8e-06 8.3e-05 23.2 4.2 1 23 1472 1494 1472 1494 0.98
35 35 0.00065 0.014 16.2 1.2 1 23 1500 1522 1500 1522 0.98

Sequence Information

Coding Sequence
ATGTCCGGATGTGCTGTACGATATTGTAAAAATTGGGATGAAAATACAAATGACAAAACAATACAATATTATCCATTCCCACAAGATCCAATAATTGCACAAAAATGGTTAGAGGCATGTAATGTTGATAATTTCAGTAACCTCCAAAGTGGACATGTCTGTGCTATACACTTTACAAACGATTGTTTTAAGATGACAGATTATTTAATTGCACCTGGATGTGAACCAATTGAAGAACTCACACCAAATGCAATACCTACAAGATATTTAAACTTTGAACCTGTACCTGTTCCAATTCATATAAGTTCACCACCGCAACCAGACGATAATGATGATGATGTAAAAATAGAACACATCAATCTTGAACAAAATAGTGCGGGGTTTTTAATTAAACAAGAAATTAAAGAAGAACTCGAAAACGATGAAAATAAAGGTGATGGAAGTGAAAAACAGTGTAGAGTGTGTAATAAAATGTGTGAAAGTGGTTCTCCTGATGGTAAATGTTCTGAGTGTCGAGCACAAGGTACAAATTCATCAGCTAGTGATTCTGAACTTCCCGATTTAAATAATTCCCTTAAAAACTATACACGAACTTTAGATAAACGTAAAAAATTAAAAAGTGGTGAGAAACGAACGTGGAAATGTGACACATGTGAGAAAATTTTTACCGCACATAGTCATTTAAAACGGCATATTAAAATTCATACCGGTGAAAAATCATATCAGTGTATCGCTTGTGGAAAAACGTTTACGCAACAAAGTAGTTTAACGATACATGAACGGATACATACGGGTGAAAGACCTTATGCATGTGAATATTGTGATAAGACCTTTATCGATGGTGATAGTTTAACGCGTCATGAACGAACACATACGGGTGAACGACGTTATAAGTGTAATATTTGTGAGAAAACCTACACGACGCAAAGTCATTTAAAACGGCATGAAAAAATTCATTCGGGAGATCGACCATTTAAGTGTATTATTTGTGAGAAAACATTCACATCGCAAAGTAATCTGAACACACACATGCAAACACATACCGGAGATCGTCATTATAACAATCATTCATCATCATCTTCAACGGGTATGTACAATACACCAGCTCCAGAAACTTATATGCCAACGTACACCCATTTAACAAATCATATGTTACCGGAAACAACTGACACCGAAACTGTTAAAGTAAATCCAACACCAATTGTTCCAGGTCCACCATTAGCACCGGGTGAGAAACCAATACCACCTGGTGAAAAACCACATAAATGTCCTGATTGTGATCAAGCATTTAATCATTACAGTAATTTAGTACGACATTCTCGAACACATTTAAGTGAGAAAACGTACGTTTGTGAGTATTGTGACCAAACATTTTTAAATCAAAGTACCTTAACGATTCATATACGAACACATACGGGGGAACGACCTTATCGATGTAACATTTGTGAACAAACCTTTATAGTTCAGTGTCATTTAAAACGGCATGAGAAAACACACACCGGAGATAGACCGTATAAATGTGAGTTTTGTGAGAAAACATTTATCGATTCAAGTGGAAAAACACGACATGTTCGAATTCATACCGGCGAACGTCCTTACAAGTGTGATATTTGCGATAAAACATTTATCGTACAAAGTCATTTAAAACGGCATGAAAAAATTCACACTGGGGATCGACCTTATAAATGTGATCATTGTCCGAAAGCATTCCGGACGCAAAGTAATTTGAACACACATAAAAAAGTGCATAAAAAGAAGAAACGACGTAAAAACGCCACTTCTGAGAGTGAATCGGGTGGGAATGATTCAGATGATTCATTCTGGGGTGGGCAAGAATTATTTAAGTGTAATGTTTGTAACGAACAATTTAAGAAACAGTCCGAATTAAAAAAGCATCGGAAAACTCATGCGAAAATGCAATCGTATAAATGTGATGTATGCGAAAAAGAATTTAAATCGCGAATCGATTTTGTACGACATAGTCGTACACACACTGGAGAAAAACCGTATCAATGTAATTTTTGTGGGAAAACATTTACACAACAAAGTAGTTTAACAATTCATGAGCGTATACATTCAGGGGAAAAACCATACACTTGTGAAATATGTAACAAGAAATTTAAGGATGGGGATAGTTTAACACGTCATATGCGTGTTCACACGGGAGAACGACCGTATAAGTGTAATATTTGTGAGAAAACATTTAAGGTTCATAGTCATTTAAAACGGCATGAACAATTACATACCGGTTTACGACCTTATAAATGTATTATCTGCGAAAAAACATTTACAACACAATTTAACTTAAATTCACATTCGAACACACATTTCGGTGAGAAACCATATTCGTGTAATGTTTGTAACAAGAAATTCATTGATCAAGCTGGATTATCGAAACATATGAGAAATCATAATGTTGAACCGGTTATCCAACCACCACTGTTTGAAACGATTCCAGCATATCCTCAACAGAATATCTTAATGCCACCGGCTCCGAGAGTTGATCTTCACGATTCCATGGGAAGACCTTCTTATACACATACACCAGAAAGTTCGTCACACCAGAGTATGCCTGATCCAGTTTATCAACGTAATTTAAATCCTATGAATATGGGTTATAATTATCCTCCAAGTACACAGTTAATTGATCCGAATCCGTATAATAATCTTTGGGGAGATATGTCAGGAATGAAAATTCCTACATACACGAATGAAATCTATAAATCAGAAATGCCTGATAATAAGATGTATGAAGAACAGAATGAACATAATTCTTCGGATATGAAAATAAATCATCAAATTGAACCGAAGGATGTTGTTCAAACGGAAATCAAAGAAGAGGGTACAAACGAGGATATTTTTAACAATCAAGTTGAAGATATTGTCAAAAAAGAACATGATGTAAAGCCAAGATGTGTCCTATGCAATAAATTATGCGATGGGGACGAAAAGAATTATTCGAAAAATGATAATGGATTACTTTGCGCTACGTGTGGTGAACAAGGTAGTCAGGATGAAGATGATCAACAATCAAATCATTCAAATGATACATTTATGGATAACAACGATAATAACGATAACGATAATGCATTTAGTGAAGAAGAGGAAAAATTCGAAATAGAAAAATATCCGGATGATCCAACGAAGCCGTATAAATGTAAGATTTGTGGTAAAGGATTCAAAAAACAGAATGTTTTAAAACGACATGAAAAATTACCGCATAATGGACGACGACCGCATAAATGTGAGACTTGTAATAAAATATTTAAAAATTTATCACGCTTAAAACGACATAAAAAAACACATACGGGCGAACGACCGTATCAATGTAATATTTGTGGGAAAACATTCACACAACAGAATAATTTAACGAAACATAATCGAATTCATACGGGTGAAAAACCATATACTTGTGAAGTTTGTGGTAAACCTTTTAAGGATTCAGACAGTTTAACCAAACATGTCCGTATACATACAGGGGAACGGCCGTATAAATGTTCAATTTGCGGTAAATCGTTTATAGTACAAAGTCATTTAAAACGACATGAACGTATTCACACAGGGGATCGACCCTATAAATGTGAAATATGTGAGAAAGCATTTCGCACGCAAAGTAATCTTAATACACATACTAGTACGCATTTCGGTGAAAAACCTCATGCATGTGATTTATGTAACAAAACATTCACTCAATTATCAACGTTAACCAAACATAAGCGTATCCATACGGGGGAGAAACCATTCACATGTACAATTTGTGGTAAAACATTTATCGATGCAAGTAGCTTAACAAAACATATCCGAGTTCATACGGGTGAAAAACCGTATAAATGTAACGAATGTGATCAACACTTTGCGTTACGTAGTAACTTAAGTCGTCATGCACGTACTCATACAGGAGAACGTCCATACACATGTGATATATGTGAGAAAACATTTATCGATTCAAGTGGTTTAACCAAACATAAACGTACACACAGTGGGGAGAAACCGTATAAATGTAATATTTGTGAAAAAGCATTTACACAGCAAAATAATTTAACGGAACATTCACGTATCCATACGGGGGAGAGTCCGTTTAAATGTAAATATTGTCATCAAGCTTTCCCACGCCAAAGTAATTTAACACAACATGTACGTACACATACCGGAGAAAGACCATTCCGTTGTGATGTATGCTTCCAAACATTTGCTCGTTTGGATAGTTTAACACAACATATGCGTAATCACACCGGGGAACGACCGTATAAGTGTGGAACATGTGATAAAACATTTACACGACCGGATAGTTTACATCGTCATAAAAAGATTCATACGGGTGAACGAGCGTATAAGTGTGCTACTTGTGGTAAAACATTTATACAGCATGGTAACTTAATACAACATGAGCGTACGCACACGGGGGAGAAACCATTTAAATGTAATGTTTGTGATAAACGTTTTACGAGTCGTAGCCATTTGAAAGTACATTCACGTATACATACCAGGGATAAATGTTTTAAGTGTAATATTTGTGATAAAGCCTTTTTAGATACGGATCGATTACGAAAACATCAAAAGATTCATACCAAAAATGTACCATTTATGATTAAGAGTGAATCTTATGATATGTAA
Protein Sequence
MSGCAVRYCKNWDENTNDKTIQYYPFPQDPIIAQKWLEACNVDNFSNLQSGHVCAIHFTNDCFKMTDYLIAPGCEPIEELTPNAIPTRYLNFEPVPVPIHISSPPQPDDNDDDVKIEHINLEQNSAGFLIKQEIKEELENDENKGDGSEKQCRVCNKMCESGSPDGKCSECRAQGTNSSASDSELPDLNNSLKNYTRTLDKRKKLKSGEKRTWKCDTCEKIFTAHSHLKRHIKIHTGEKSYQCIACGKTFTQQSSLTIHERIHTGERPYACEYCDKTFIDGDSLTRHERTHTGERRYKCNICEKTYTTQSHLKRHEKIHSGDRPFKCIICEKTFTSQSNLNTHMQTHTGDRHYNNHSSSSSTGMYNTPAPETYMPTYTHLTNHMLPETTDTETVKVNPTPIVPGPPLAPGEKPIPPGEKPHKCPDCDQAFNHYSNLVRHSRTHLSEKTYVCEYCDQTFLNQSTLTIHIRTHTGERPYRCNICEQTFIVQCHLKRHEKTHTGDRPYKCEFCEKTFIDSSGKTRHVRIHTGERPYKCDICDKTFIVQSHLKRHEKIHTGDRPYKCDHCPKAFRTQSNLNTHKKVHKKKKRRKNATSESESGGNDSDDSFWGGQELFKCNVCNEQFKKQSELKKHRKTHAKMQSYKCDVCEKEFKSRIDFVRHSRTHTGEKPYQCNFCGKTFTQQSSLTIHERIHSGEKPYTCEICNKKFKDGDSLTRHMRVHTGERPYKCNICEKTFKVHSHLKRHEQLHTGLRPYKCIICEKTFTTQFNLNSHSNTHFGEKPYSCNVCNKKFIDQAGLSKHMRNHNVEPVIQPPLFETIPAYPQQNILMPPAPRVDLHDSMGRPSYTHTPESSSHQSMPDPVYQRNLNPMNMGYNYPPSTQLIDPNPYNNLWGDMSGMKIPTYTNEIYKSEMPDNKMYEEQNEHNSSDMKINHQIEPKDVVQTEIKEEGTNEDIFNNQVEDIVKKEHDVKPRCVLCNKLCDGDEKNYSKNDNGLLCATCGEQGSQDEDDQQSNHSNDTFMDNNDNNDNDNAFSEEEEKFEIEKYPDDPTKPYKCKICGKGFKKQNVLKRHEKLPHNGRRPHKCETCNKIFKNLSRLKRHKKTHTGERPYQCNICGKTFTQQNNLTKHNRIHTGEKPYTCEVCGKPFKDSDSLTKHVRIHTGERPYKCSICGKSFIVQSHLKRHERIHTGDRPYKCEICEKAFRTQSNLNTHTSTHFGEKPHACDLCNKTFTQLSTLTKHKRIHTGEKPFTCTICGKTFIDASSLTKHIRVHTGEKPYKCNECDQHFALRSNLSRHARTHTGERPYTCDICEKTFIDSSGLTKHKRTHSGEKPYKCNICEKAFTQQNNLTEHSRIHTGESPFKCKYCHQAFPRQSNLTQHVRTHTGERPFRCDVCFQTFARLDSLTQHMRNHTGERPYKCGTCDKTFTRPDSLHRHKKIHTGERAYKCATCGKTFIQHGNLIQHERTHTGEKPFKCNVCDKRFTSRSHLKVHSRIHTRDKCFKCNICDKAFLDTDRLRKHQKIHTKNVPFMIKSESYDM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00332449;
90% Identity
iTF_00332449;
80% Identity
iTF_00332449;