Ccar016301.1
Basic Information
- Insect
- Chrysoperla carnea
- Gene Symbol
- -
- Assembly
- GCA_905475395.1
- Location
- FR997758.1:62246297-62251097[-]
Transcription Factor Domain
- TF Family
- zf-BED
- Domain
- zf-BED domain
- PFAM
- PF02892
- TF Group
- Zinc-Coordinating Group
- Description
- The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.0049 4 7.9 1.3 12 38 132 155 125 159 0.82 2 14 0.029 23 5.5 0.5 14 29 162 177 150 190 0.74 3 14 0.029 24 5.4 0.9 17 38 193 211 178 215 0.78 4 14 0.11 88 3.6 1.9 11 28 216 232 210 245 0.74 5 14 0.067 55 4.3 0.7 16 38 248 267 235 271 0.72 6 14 0.0039 3.2 8.2 1.6 9 38 270 295 263 299 0.76 7 14 0.045 36 4.8 1.5 14 38 302 323 294 328 0.75 8 14 0.02 16 6.0 1.9 14 38 330 351 320 355 0.75 9 14 0.042 34 4.9 2.2 14 38 358 379 350 384 0.77 10 14 0.049 40 4.7 1.7 14 38 386 407 378 412 0.75 11 14 0.017 14 6.2 0.8 14 38 414 435 404 439 0.75 12 14 0.051 41 4.7 0.6 17 29 445 457 430 469 0.75 13 14 0.16 1.3e+02 3.1 5.2 13 38 497 519 458 524 0.77 14 14 0.084 68 4.0 0.5 6 30 519 542 514 549 0.70
Sequence Information
- Coding Sequence
- ATGGCAATTAATGCATTTCAAGATATGGATATAAATAATGTTATCAAAGAAGAAAATATAAAACTTGAAAAACAACTGAACACAGAATTAATAATCAAAGATGAAATATTAGAAGACGTTAATGATGACATGGACACGGTCATTACAATGCAAGAGGGACAAATTGAAAATGAACTGCAAGTAGACAGCAACATTGTTATAATGGAAGATATGCCAAAAAGATTTAATACTAACGTTAAATTTAAACAAATTAATGAAAATGACAAACAATTAAATACAGAAGTCATTATTAACGACGAAATTTTAGCTGAAAATGTATTAGATCCACAACAAATAAATACTAGTACAAAACTATCATGTCATAAAAAAACTATCACCGAGAAAAAAACTATTGTTAGAGAAAAACGATTTACATGTGATATTTGTAATAAAACATTTACTAAAAGAAGTAATCTAAATGCACATAAGAGAATTCACACTGGAGAAAAACCATTTGCATGTGATATTTGTAATAAAACATTTGTTCGAAGAGACAATCTAAATGCACATAAAAGAATTCACAATGCTGATAAACCATTTGCATGTGATATTTGTAATAAAACATTTGCTAAAAGAAGTACTCTAACGAGACATACAAGAATTCATACTGGGGAAAAACCATTTGTATGTGAGATTTGTAATAAAACATTTACTCTAAGATACACTCTAATGGCACATACAAGAATTCACAATGCTGATAAACCATTTGCATGTGATATTTGTAATAAAACATTTACTGAAAGAAGTGATCTAACGAGACATACAAGAATTCACACTGGGGAAAAACCATTTGTATGTGAGATTTGTAATAAAACATTTACTGAAAAAAATACTCTAACGAGACATACAAGAATTCACACTGGGGAAAAACCATTTGCATGTGAGATTTGTAATAAAACATTTACGGAAAGAAGTACTCTAAGGGCACATACAAGAATTCATACTGGAGAAAAACCATTTGCATGTGAGATTTGTAATAAAACATTTACTGAAAAAAATACTCTAACGAGACATACAAGAATTCATACTGGAGAAAAACCATTTGCATGTGAGATTTGTAATAAAACATTTGCTAAAAGAAGTACTCTAACGAGACATACAAGAATTCATACTGGAGAAAAACCATTTGCATGTGAGATTTGTAATAAAACATTTACTGAAAGAAGTACTCTAAGGGCACATACAAGAATTCATACTGGAGAAAAACCATTTGCATGTGATATTTGTAATAAAACATTTACTGGAAGAAGTAATCTAAACGCACACACAATAATTCACAATGCTGATAAACCATTTGCATGTGATATTTGTAATAAAACATTTGCTCGAAGAGACAAGCTAAATGCACATAAAAGAATTCACAATGCTGATAAACCATTTGCATGTGATATTTGTAATAAAACATTTACTGAAAGAAGTACTCTAAGGGCACATACAAGAATTCATACTGGAGAAAAACCATTTGCATGTGATATTTGTAATAAAACATTTACTGAAAGAAGTAATCTAAGGGCACATACAAGAATTCACAATGCTGATAAACCATTTGCATGTGATATTTGTAATAAAACATTTGTTCAAAGAGGCAATCTAAATGCACATAAAAGAATGTACACTTGTGAAAAACCATTTGATATGGCTATAAATAATATTATCAAAGAAGAAAATATTAAACTTGAAAAACAACTGAACACAGAATTAATAATCAAAGAAGAAATATTAGAAGACGCTGATGAGGACAGAAAAATGCAACATGAACTACAAGAAGACAGCAACAGTGAAGGAGAACGATCGCTACGTGCTAAAGCATTAGCCCGAGTATGA
- Protein Sequence
- MAINAFQDMDINNVIKEENIKLEKQLNTELIIKDEILEDVNDDMDTVITMQEGQIENELQVDSNIVIMEDMPKRFNTNVKFKQINENDKQLNTEVIINDEILAENVLDPQQINTSTKLSCHKKTITEKKTIVREKRFTCDICNKTFTKRSNLNAHKRIHTGEKPFACDICNKTFVRRDNLNAHKRIHNADKPFACDICNKTFAKRSTLTRHTRIHTGEKPFVCEICNKTFTLRYTLMAHTRIHNADKPFACDICNKTFTERSDLTRHTRIHTGEKPFVCEICNKTFTEKNTLTRHTRIHTGEKPFACEICNKTFTERSTLRAHTRIHTGEKPFACEICNKTFTEKNTLTRHTRIHTGEKPFACEICNKTFAKRSTLTRHTRIHTGEKPFACEICNKTFTERSTLRAHTRIHTGEKPFACDICNKTFTGRSNLNAHTIIHNADKPFACDICNKTFARRDKLNAHKRIHNADKPFACDICNKTFTERSTLRAHTRIHTGEKPFACDICNKTFTERSNLRAHTRIHNADKPFACDICNKTFVQRGNLNAHKRMYTCEKPFDMAINNIIKEENIKLEKQLNTELIIKEEILEDADEDRKMQHELQEDSNSEGERSLRAKALARV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00332664;
- 90% Identity
- iTF_00332664;
- 80% Identity
- iTF_00332664;