Ccar001085.1
Basic Information
- Insect
- Chrysoperla carnea
- Gene Symbol
- -
- Assembly
- GCA_905475395.1
- Location
- FR997759.1:22289705-22293120[+]
Transcription Factor Domain
- TF Family
- zf-BED
- Domain
- zf-BED domain
- PFAM
- PF02892
- TF Group
- Zinc-Coordinating Group
- Description
- The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 8 0.021 17 5.9 0.2 18 30 215 228 206 237 0.81 2 8 0.042 34 5.0 1.6 18 31 243 256 232 265 0.78 3 8 0.014 11 6.5 0.5 15 30 268 284 259 293 0.80 4 8 0.081 66 4.0 0.4 17 30 298 311 287 317 0.80 5 8 0.0017 1.4 9.4 0.4 8 36 318 347 314 348 0.80 6 8 0.0039 3.1 8.3 2.6 15 38 352 372 344 377 0.85 7 8 0.0037 3 8.3 1.2 18 38 383 400 374 405 0.89 8 8 0.087 71 3.9 0.2 18 38 411 428 401 428 0.83
Sequence Information
- Coding Sequence
- ATGGAAAATGAACGAATTGAAGAAGTTCAAGAAGATAATTTTACAATGGAACATCGACCAATTAAAAATGAAGTTTTAGAAGACAGTTTTAGAAGACTAGATAGCAGTGATATGGAATCTGAACAAATTCATAAAAATTTGACGATAATCAACTATGAAAATATTAAGCTTGAAAAACAATTAAATACAGAATTTATAACATATCAATCGAAATTTCTCAGAGAAGTGAAAAATGTTACGATAGAAGATGGACGAATTATAAATGGAATACCAGACGAAGGCAGCAATGATAGTGTTGTAAGTGTAAAACATGAACTTTTTGATGAAAATAAACAATTGTACACAAATAATTACGAAAATATTAAACTTGAAAAAGAATTACATACAGAATTAATTATTGAAAATGGAACATTCGATGAAAATGTTGTAATGGAAGTTGGGCGAATTAAAAATGAAATACTAGAAGTAGACAGCAGTGTGAAACATGAACCTGTTCATGAAAATGATAAACATTTGCACCCAATTAATTGTGAAAATATTAAGTGTGAAAAAGAATTACATACAGAACTAATTATTAAAACTGAAATATTGAGTGAAAGTGATTTAGAATTACAACAAGATCATAACGAAAAAAAACCGTTTTCGTGTGATATTTGTAATAGAACATTTAGTCGTGGTCCTCATTTAGTTCAACATAAACGTGTTCACACTGGAGAAAAACCATTTTCTTGTTATATTTGTAATAAAAAATTTAGTCAAAAAGGTTCTTTAATTACACATAAACGGATGCATAGTGAAGCAAAATCATTTTCATGTGATATTTGTAATAGAACATTTAGTCGTGGTCCTCATTTAGTTCAACATAAACGTGTACACACTGGAGAAAAACCATTTTCATGTGATGTTTGTAATAAAAAATTTAGTCAAAAAGGTTCTTTAGTTACACATAAACGGATCCATAGTGATGAAAAACCATTTTCATGTGATATTTGTAATAAAACGTTTAAATATAAGCAAGCTTTAGTTACACACAAACTAATTCATAGAGGAGACAAAACATTTTCATGTAACATCTGTAATAAAACATTTAGTCTTCGTAATAATTTAATTAAACATAAACTAATTCATAGTGGAGAGAAACCATTTTCGTGTGATATTTGTAATAAAACATTTAATCAGAAAAGTAATTTAATTAAACATAAACGGATACATACTGGAGAAAAACCATTTTCATGTGATGTTTGTAATAAAAAATTTAATCAACAAAGTAATTTATTTCAACATAAATGGATTCATCGTCGATAA
- Protein Sequence
- MENERIEEVQEDNFTMEHRPIKNEVLEDSFRRLDSSDMESEQIHKNLTIINYENIKLEKQLNTEFITYQSKFLREVKNVTIEDGRIINGIPDEGSNDSVVSVKHELFDENKQLYTNNYENIKLEKELHTELIIENGTFDENVVMEVGRIKNEILEVDSSVKHEPVHENDKHLHPINCENIKCEKELHTELIIKTEILSESDLELQQDHNEKKPFSCDICNRTFSRGPHLVQHKRVHTGEKPFSCYICNKKFSQKGSLITHKRMHSEAKSFSCDICNRTFSRGPHLVQHKRVHTGEKPFSCDVCNKKFSQKGSLVTHKRIHSDEKPFSCDICNKTFKYKQALVTHKLIHRGDKTFSCNICNKTFSLRNNLIKHKLIHSGEKPFSCDICNKTFNQKSNLIKHKRIHTGEKPFSCDVCNKKFNQQSNLFQHKWIHRR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00333126;
- 90% Identity
- iTF_00333126;
- 80% Identity
- iTF_00333126;