Basic Information

Transcription Factor Domain

TF Family: zf-BED
Domain: zf-BED domain
PFAM: PF02892
TF Group: Zinc-Coordinating Group
Description: The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 0.00038 0.31 11.5 0.3 11 30 99 118 94 128 0.85

2 8 0.052 42 4.7 0.3 17 30 133 146 122 153 0.81

3 8 0.0067 5.4 7.5 0.6 13 30 157 174 150 183 0.78

4 8 0.015 12 6.4 0.2 18 30 190 202 176 209 0.86

5 8 0.085 70 4.0 0.7 18 36 218 233 206 235 0.82

6 8 0.015 12 6.4 0.9 18 29 244 255 231 269 0.76

7 8 0.037 30 5.1 0.2 19 29 273 283 269 297 0.87

8 8 0.0012 0.98 9.9 0.6 18 38 300 317 288 322 0.88

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	0.00038	0.31	11.5	0.3	11	30	99	118	94	128	0.85
2	8	0.052	42	4.7	0.3	17	30	133	146	122	153	0.81
3	8	0.0067	5.4	7.5	0.6	13	30	157	174	150	183	0.78
4	8	0.015	12	6.4	0.2	18	30	190	202	176	209	0.86
5	8	0.085	70	4.0	0.7	18	36	218	233	206	235	0.82
6	8	0.015	12	6.4	0.9	18	29	244	255	231	269	0.76
7	8	0.037	30	5.1	0.2	19	29	273	283	269	297	0.87
8	8	0.0012	0.98	9.9	0.6	18	38	300	317	288	322	0.88

Coding Sequence: ATGGCAAATAATTCATTTGATAATAAAAATAATCATTTTTTAATCAAAGAAGAAAATAAGTTACATACAGAATTAATTATTAAAAATGAAACATTAGATGACAAAATTACAATGGAAGTTGGACGATTTAAAAATGAAATACCAGAAGAAAGTAGCAGTGATATTGATAGTGTTATAAGTGTAAAAAAAGAATTTGTTGAAATTGAAAACGATAAACAATTGTGCACAATTAATTACGAAAATATTAAACTTGAAAAAGAATTACATACAGAACTGATTATTAAAGATGAACCTATTTTAGAAGAAAAATCATTTACATGTGATATTTGTAATAAAACATTTACTCGGCAAAGTAGTTTAGTGATACATAAACGTATTCATAGCGGAGAAAAACCATTTTCATGTGATGTTTGTAATAAAACATTTACTCGGCAAAGTAGTTTAGTGATACATAAACGTATTCATAGCGAAAAAAAACTATTTTCATGCGATATTTGTAATAAAACATTTACTCGGCAAAGTAGTTTTGTGGCCCATAAACTTATTCATAGCGGAATAAAACCATTTTCATGTGATATTTGTAATAAAACATTTACTCGGCAAAGTAGTTTAGTGGCCCATAAACGTATTCATAGCGGAATAAAACCATTTTCATGTGATATTTGTAATAAAACATTTACTCTTCGACATAATTTAGTTTCACATAAATATATTCATAGCGAAGAAAAAATATGTGATATTTGTAATAAAACATTTACTCGGCAAAGTTATTTAGTGGCCCACAAACTTACTCATAGCGGAATAAAACCATTTTCATGTGATATTTGTAATAAAACATTTACTCGGCAAAGGTATTTAGTGGCTCATAAACGTATTCATAGCGGATTAAAACCATTTTCATGTGGTATTTGTAATAAAACATTTACTCGGCAAAGTGGTTTAGTTAGACATAAACGGATTCATAATGAAGGAAAAACATTTTCAAATATCATAAAGGTAGTCCAATAA
Protein Sequence: MANNSFDNKNNHFLIKEENKLHTELIIKNETLDDKITMEVGRFKNEIPEESSSDIDSVISVKKEFVEIENDKQLCTINYENIKLEKELHTELIIKDEPILEEKSFTCDICNKTFTRQSSLVIHKRIHSGEKPFSCDVCNKTFTRQSSLVIHKRIHSEKKLFSCDICNKTFTRQSSFVAHKLIHSGIKPFSCDICNKTFTRQSSLVAHKRIHSGIKPFSCDICNKTFTLRHNLVSHKYIHSEEKICDICNKTFTRQSYLVAHKLTHSGIKPFSCDICNKTFTRQRYLVAHKRIHSGLKPFSCGICNKTFTRQSGLVRHKRIHNEGKTFSNIIKVVQ

Sequence clustering based on sequence similarity using MMseqs2