Ccar001591.1
Basic Information
- Insect
- Chrysoperla carnea
- Gene Symbol
- -
- Assembly
- GCA_905475395.1
- Location
- FR997759.1:8518814-8519644[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 3.1e-10 2.5e-07 30.7 0.0 3 37 20 54 18 57 0.94
Sequence Information
- Coding Sequence
- ATGCCTCGAACTCAATTGTCACCAAAGCCGAAGTCGAAAAGAAAAACTTGGGCCAGGAATAATATGATTGAAGCTGTAAAAGCAGTAACAGAAAAGAAAATGGATTTGAAAAAAGCGTTCAAGCTTTATAATGTTCCAAAAACTACTCTGCAAAGGTTTGTGCACAGTGACCAGCCTCCCGTTGAGGTTGTAAATACTACTATAGGAAGAAGACCTGTCCTGCCATCTCACCTTGAAGAAAGCCTTGTGTCATACCTTCTCGTTATGGAAAGTAAATTCTATGGCTTGACCCGTCAGGATGTTCGTAAAATGGCCTATCAGTTGGCTGTGAAAAATAATGTCGAACATTCGTTTAGAAATAACATAGTCGGTCGAGCTTGGCTTGATCATTTCTTATTACGCCACAAAGATAAGCTTTCTATTCGATCACCAACAGGAACTTCCAATGCTCGGGCTCAAGGTTTCAATAAAGAAGCAGTGGATAAGTTCTTTGACATCCTTGAAGAAGAATTCCAAAAACATAATTATCCACCAGAGAGAATCTTTAATGTCGACGAAACCGGGCTACCTATCGTGCAGAGTAAAATTGTTAAAGTAATTGGTCTGCGAGGGAAAAGACAAGTAGGTAGCATTACTGCGGCTGAACGTGGATCATTGGTGACAGTGGTATCAGTGAGGAGCGCAAGTGGCATATTTATCCCACCGCTGCTGATATTCCTACGCAAAAACATGACGCAAACGTTGATGAAAGGAGCTCCGCCAGGTTCTACCGGAAGATGCCATCCATCAGAATGGATTCAGGCAAATCTGTTTACGAACTGGCTGAATTGA
- Protein Sequence
- MPRTQLSPKPKSKRKTWARNNMIEAVKAVTEKKMDLKKAFKLYNVPKTTLQRFVHSDQPPVEVVNTTIGRRPVLPSHLEESLVSYLLVMESKFYGLTRQDVRKMAYQLAVKNNVEHSFRNNIVGRAWLDHFLLRHKDKLSIRSPTGTSNARAQGFNKEAVDKFFDILEEEFQKHNYPPERIFNVDETGLPIVQSKIVKVIGLRGKRQVGSITAAERGSLVTVVSVRSASGIFIPPLLIFLRKNMTQTLMKGAPPGSTGRCHPSEWIQANLFTNWLN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01431763;
- 90% Identity
- iTF_00667309; iTF_01431763; iTF_01430683; iTF_00147228;
- 80% Identity
- -