Ccar001874.1
Basic Information
- Insect
- Chrysoperla carnea
- Gene Symbol
- -
- Assembly
- GCA_905475395.1
- Location
- FR997759.1:11166342-11168192[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 9.3e-11 7.5e-08 32.3 0.0 1 41 18 59 18 61 0.89
Sequence Information
- Coding Sequence
- ATGCCAAGAAACCGGATAAAACCACTAGGGACTAGAAATTACGGTAACTACAAACCAGAAATATTGGATGAATGTCTTGAGGCCATACGATCAGGTGAGTTAACACAAAGAGCTGCAGAAACAAGGTATGGCATTCCTCGTTCTACAATTAAGAATAAATTGAAAGGCAGGCATATGAATACAGTTGGTCGAGCAAGAACATTTAGCGATGAAGAAGAGCTGGCTTTTGAAAAGCACTTGATAACACTATCTGACTATGGATTTCCAGTTGTTGAGACTGATTTCAGATATGCAGTAAAATGCTATTTAGATAAGAAAGGTGTCAAGATAGATAGGTTTCAAAACAACCTCCCTGGCTACGAATGGACCAAATCGTTTTTGAAAAGGCATGAGAAGCTGACAAGTCGTCTCAGCTCTAACATAAAAAAAGTAAGAGCTGAAGTTGGTGCTAAAGATATTGAAAATTACATGGAAAACCTGAAAGAAGTTATCGAAAACGTTCCTGCCACTCATATTTGGAACTACGATGAAACAAATCTTTCAGATGACCCTGGAAACAAAAAGGTAATTTGTAAGAGGGGAGCTAAATATGTGGAAAACATATGCAATCATAGTAAAAGTGCAACCTCTCTCATGTTTTCTGGAAATGCTGCAGGGACTCTTCTCCCCCCCTATGTAGTGTACAAGGCAGATAACATGTGGACAACTTGGACTGAGAATGGACCAGCAGGGGCTCGTTATAATCGTTCTAAAAGTGGCTGGTTTGACGCTATATGTTTCGAAGATTGGTTTGAGTCGTTGTTCTTACCTCATGTGAGAACTCAAAATGGGCCAAAAGTTATTATCGGGGATAACTTGTCTTCACACATTAGTTTAAACGTACTTAGGCTTTGTGAAGAAAACAATGTTAAATTTGTCTGCTTACCACCGAACTCCACCCATCTTACACAACCTCTAGATGTGGCCTTCTTTTCCCCCATGAAAAAGTCATGGCGAGCAATCTTAAGCAAATGGAAAGAGTCCGCTTCTGGCTCTAAGTTCACAACCATTCCAAAGGACGCATTTCCGACTCTATTAAAAGAGTTAATGGCTAGTTTGGCAGAAAATCAAGAAAGAAACCTGATGGCTGGATTTGAAAAGTGTGGAATCCATCCTTTTAACAAACAGAAACTACTAGACAGGCTGCCAGAAAACCAACCGGTTGACAACACAGTAATAGGAGAAGCCTTTCTTGAGCAACTGGAGAAAAAGAGAGCTGAATACTTGACGAAAGATGGCCCCAAAAAGAGAAAGAAGAAGCTGCAAGTGCCCGCAGGAAAGAGTGTTTCGGTTAAGGATGTAGAAGAAGCTACCGGTATCTTAGAAGCAACCAATAAACCCTCTTCGTCAAAGCAGACTTCGTCAAAATCTGAGAAAGAAAAAGTTCCCAAGAAGAAGCATAAACAGACTTACAATTCTTCTTCGGATGAAGACGATGTGGAAATGGTATTAGAGTCAGATGGAGTGAGTGAATCATTTTCAGACCTAGAAGACCTTCAGGAAGAATCTAAGAAAGCCGAACCTACTGCTGAAACAAAAAAACAAAAATGGAAAGCAGAAGATTTTGCCGTTGATAACTTTGTAATTGTGATCTACAATGGTCAAAAGTACCCTGGCAAAATAGTAAGCATTTTTGATCATGGCCCAGTAGTTGAGTGCATGGAGAAGAAAATAAAATTCTGGCGCTGGCCTGAGAAGCAAGACCGCATGGCCTATGACTGGGATGACGTTTGGGAAAAAATAAATCCTCCTAAAATAGCATCAAAGAGGAACCAGTTCACAGTCCCAGAACTAGACAATTTCGTGGAATAA
- Protein Sequence
- MPRNRIKPLGTRNYGNYKPEILDECLEAIRSGELTQRAAETRYGIPRSTIKNKLKGRHMNTVGRARTFSDEEELAFEKHLITLSDYGFPVVETDFRYAVKCYLDKKGVKIDRFQNNLPGYEWTKSFLKRHEKLTSRLSSNIKKVRAEVGAKDIENYMENLKEVIENVPATHIWNYDETNLSDDPGNKKVICKRGAKYVENICNHSKSATSLMFSGNAAGTLLPPYVVYKADNMWTTWTENGPAGARYNRSKSGWFDAICFEDWFESLFLPHVRTQNGPKVIIGDNLSSHISLNVLRLCEENNVKFVCLPPNSTHLTQPLDVAFFSPMKKSWRAILSKWKESASGSKFTTIPKDAFPTLLKELMASLAENQERNLMAGFEKCGIHPFNKQKLLDRLPENQPVDNTVIGEAFLEQLEKKRAEYLTKDGPKKRKKKLQVPAGKSVSVKDVEEATGILEATNKPSSSKQTSSKSEKEKVPKKKHKQTYNSSSDEDDVEMVLESDGVSESFSDLEDLQEESKKAEPTAETKKQKWKAEDFAVDNFVIVIYNGQKYPGKIVSIFDHGPVVECMEKKIKFWRWPEKQDRMAYDWDDVWEKINPPKIASKRNQFTVPELDNFVE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00332278; iTF_00332279; iTF_00332280; iTF_00332281; iTF_00332282; iTF_00365627; iTF_00386236; iTF_00386237; iTF_01365341; iTF_00386238; iTF_01365342;
- 90% Identity
- iTF_00365627;
- 80% Identity
- iTF_00332278; iTF_00332279; iTF_00332280; iTF_00332281; iTF_00386236; iTF_00386237; iTF_01365341; iTF_00386238; iTF_01365342;