Ccar016896.1
Basic Information
- Insect
- Chrysoperla carnea
- Gene Symbol
- -
- Assembly
- GCA_905475395.1
- Location
- FR997758.1:71438584-71439264[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.4e-10 1.1e-07 31.8 0.1 1 38 15 53 15 57 0.93 2 2 9.2 7.5e+03 -2.9 0.0 24 34 84 94 83 97 0.68
Sequence Information
- Coding Sequence
- ATGATTCGAGATTATAAAAGACATACTAATAGAGGAGAGTGGAGTGAAGAACAAATGCAATTAGCCATTCAAGCAGTTTTAGATGGAAAAAATGGTTATAAATCAGCCAGCAAGGCTTATAATGTCCCTCAAACAACACTCGAGCGTAAAGTTAACCAAGCGAGAAAAAGAGGGAATAGTATACTAAATGTCAAAGTTCCGTTGGGTCCGATTACAACAGTTTTTTCCGAAGAAGAAGAAATGGAAGGAAGATTGTTTGGTTTGTCAACTTCCGAATTACAGAAGCTAGCTTATGAGCTAGCAGTCCGTAACAACAAACAGCATAAATTTAATGAACTCAAGGAAAAGGCCGGTAAGGATTGGCTGCGTGGATTTCTGAACCGTCATCCTGACTTGAGTTTACGAAAGCCAGAAAATACGTCTGCGGCTCGTGCTGCTGGATTTAATAGAGAGTCTGTTGGAAAATATTTCGAACTGCTTGGAAAAGCACTTGATGATAACCCTTTTACCCCAGACAGGATTTATAATTGTGACGAGACAGGTATTTCAGCAACAAGTAAAAAGCAAGTGGGAGCCTTGACATTGGCGGACGCTGCAGGGACATACCTTCCTCCTATGTTTATATATCCTAGGAAACGTATGAAGTTCGAACTGCTAAATAGAGCCCCACCAAACTCATAG
- Protein Sequence
- MIRDYKRHTNRGEWSEEQMQLAIQAVLDGKNGYKSASKAYNVPQTTLERKVNQARKRGNSILNVKVPLGPITTVFSEEEEMEGRLFGLSTSELQKLAYELAVRNNKQHKFNELKEKAGKDWLRGFLNRHPDLSLRKPENTSAARAAGFNRESVGKYFELLGKALDDNPFTPDRIYNCDETGISATSKKQVGALTLADAAGTYLPPMFIYPRKRMKFELLNRAPPNS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -