Ccar003505.1
Basic Information
- Insect
- Chrysoperla carnea
- Gene Symbol
- -
- Assembly
- GCA_905475395.1
- Location
- FR997756.1:8825464-8827365[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.2e-11 9.6e-09 35.2 0.0 4 34 17 47 14 51 0.93
Sequence Information
- Coding Sequence
- ATGGCATCTACAACCAAAGAAAAGACCAGACAAACATGGGATAAAAATGCAATGGCAAATGCAATTAAAGCTATACGAGAAAAGCAAATGGGATTTTTAAAAGCATCAAAAACATACGGAGTACCCAAAACTACGCTTATACGCTTATCAAAAATAGAAGACAAATCAATTAGTGACATTACGAACCAAACACTTGGAAGAAAATCTACTTTACCGAGTCAATTGGAAGATGAATTAGCTGATTATATTCTAGAAATGGAAAAATCTGGATTTGGTCTCACACGCAGGGCCATCAGATCTTTGGCTTACCAGCTAGCAGAAAAAAATAACATAAAGCACTCATTTTCACAAGATAATGAATCTGCAGGAAGATCATGGTTGAGATTATTTCTCAAGCGCCATCCTAATCTATCCTTCCGCCGTCCAACGGGCACATCAATCGCAAGAATGAAAGGCTTTAACAAAGAAAATGTCAACGCTTTTTTTGATTTGTTGGAGAGCTCTTTGAATGAAATCCAACTACGAATGCAAGCTCGAGCAATAACACATTACGACATCGCAGAATTATTTGGTCAAGCCTACATAAGAGCTCAGCGTGCAGAATTGGCCATTAACGGCTTCCGTGCAACTGGAATATATCCCGTGAACAGGAATGTATTCCAAGATCATGACTTCATTGACGAAGACCTTCCAGAGGTAGAAGAAACTTTTGATGATCCAGTGCGCGATTTAATGACACCAGTCAATGATGATTCCGATAACTGTTTGCCTGAGCCAAGAACTGTTGTAACTCCGAGTCCTCAATCTGTGAATGTACCGCCATCACCCCAGAGTGTTGATGGACATCACCAAGCTAACCCGCAAACCGAAATGCCGACGACGACCATCGATGATGCTATAGCTGGTCCCTCAACATCATCTAGAACATTTTTGTCGCCAAAAGTGTTGCAGCCTATACCGCGTTTGAAGAAGACAGTCAGCAATAGAGGAAGAAAAACCACCAGGCCTACGATTTTGACATCTTCACCTTATAAACAAGATTTAGAAACGTCGATACAAAGGAGCACAAAAAAGAAACAAAAGAAAACGCCAAAGAAAACAGCACAAAAGAAAAGAAAAATCGCAAAAGATAAAAAATCATCGTCTGAAAGTTCTGATAAGAGTGATTTTTCAGTCAATGATAGTACCGATGAAAGTCCAGATCGTTCCCAAAATCAAAATGGTAGATGTTTGTATTGTAATGGGCTTTTTTCAGAAGATGTTCATGGAGAGAAATGGATCCAATGTGCATCTTGTAGGGAATGGGCTCATGAAGATTGTGCTGGCGTAGAAGATATGGTTGATTTCTTCGTGTGCGAATTGTGTACCAATGACTAG
- Protein Sequence
- MASTTKEKTRQTWDKNAMANAIKAIREKQMGFLKASKTYGVPKTTLIRLSKIEDKSISDITNQTLGRKSTLPSQLEDELADYILEMEKSGFGLTRRAIRSLAYQLAEKNNIKHSFSQDNESAGRSWLRLFLKRHPNLSFRRPTGTSIARMKGFNKENVNAFFDLLESSLNEIQLRMQARAITHYDIAELFGQAYIRAQRAELAINGFRATGIYPVNRNVFQDHDFIDEDLPEVEETFDDPVRDLMTPVNDDSDNCLPEPRTVVTPSPQSVNVPPSPQSVDGHHQANPQTEMPTTTIDDAIAGPSTSSRTFLSPKVLQPIPRLKKTVSNRGRKTTRPTILTSSPYKQDLETSIQRSTKKKQKKTPKKTAQKKRKIAKDKKSSSESSDKSDFSVNDSTDESPDRSQNQNGRCLYCNGLFSEDVHGEKWIQCASCREWAHEDCAGVEDMVDFFVCELCTND
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00332269;
- 90% Identity
- iTF_00332269;
- 80% Identity
- iTF_00332269;