Ccar009952.1
Basic Information
- Insect
- Chrysoperla carnea
- Gene Symbol
- bab2
- Assembly
- GCA_905475395.1
- Location
- FR997755.1:27128468-27131185[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 2.1e-14 1.7e-11 44.0 0.1 3 45 368 410 366 410 0.92
Sequence Information
- Coding Sequence
- ATGAATATCGGTGGGCAGCAACCTCAACAATATTGTTTACGATGGAACAACCATCGTTCCAATTTATTAACAGTATTTGATGAACTCTTACAAAATGAAGCATTCACGGATGTGACACTCGCATGTGAGGGCGGTTCAGCTAAATGCCATAAAATGGTTTTGGCTGCATGCTCATCATATTTCCAAAATTTATTCACTGGATTACCACACCCATGCACACATCCAGTGGTTGTACTAAAAGATGTTAAATACACAGAAATTAAAGCAATATTAGAGTATATGTATCGAGGTGAAGTCAATGTAGCACAAGATCAATTAGCTGCATTATTAAAAGTTGCAGAAGCATTAAAAGTAAAAGGTTTAATTGAAGAAAATGGCAATTCAAGTGTATCACAAAGTAGTAAATCAACAATTAAAAGGGAGGAACAACAAATTGAACAGAATTCACCGCCAACAATTACAACATCAACAAATAATGTTCAATCTGTTGCGCATAGTAGTAGCAGTAATGGATCACCTCCACATTCTACAGGTATAAATGGACCACATTCCTTTTCAAAAAGTCCATACAATATGTATGGAAAATCACCAATTGAACGTGGCTCACGTATGGGATTACCAATGTGGGCAGTACCTGGAATGTCAGTTCCACATCATGCATCCACTGTAACACCACCATCCGCAGTAGCCGCAGCCATGTTAACTAGTTGTTACGAAGCCGCCAGTCCAGACATGTCACCATTAAAACGTAAGAAAATGTCTAGCATGATGATGAGCCGTGACACACCTATTTTACGTACAGTACTTGGACAAGGGCAAGCCGATTCATCCCAACCTGTATCATTAGTATGTCATCCGGATAGTCATGAAAATTTACACTCAAATGGATCTGCATATGATAACGATAAGGCACATAAAAGCGAACCGTCTGACGAAGCTCAATCCCCGTATACCGATATTACCGATGACGATGATAAAGCAAAATTACAACATTTAGCAGCGACATCACCATACTCAAACGACATGCGATTATCAACTGGAATAGCGACTTATGTACCAACACAAAAACCAGAATGGAAACGATATAAACAATATACACGAAATGATATTATGTCAGCAATCGAGGCGGTGCGTACCGGTATGAGTGCATTACAAGCAGCAAGAAAGTACGGTGTCCCATCTCGAACCTTATACGACAAAGTAAAAAAATTGGGTATAACAACTTCGAGGCCTTTTAAACGTGGTTCAAATGGAAGTAGCATAATGTTTCCTTATGGTATAAGTGGTACAAGTTCTCCTTACGGTGGTCATATTCATGAAGGTGAAGAAGCCGCCATATCTGGACACCATCCGAATATGACATTAGAAGGTAGTTTCTTTCAACATTCAATAAGTGGTACACCAAATGGTCCAGGTGGTCGGTCGCCAAGTCCCAGTCCTAGTTTAGTACAATATATGCGTCAAAATAGTCTAACACCGTCACCACCTGATGATCATCATCGTAGCGAAACAAACGGCAGCTCAGAGCGCGAACGTGATGAAGAGAATGATGACGATCAAGTTGAAGATTTATCAATACAGCGTAAAGATGATCCTTCACCGCAACAATCACGTGTAATTGTACCTCCAATGAATCAAGTGTCTACAATAATAAAAAAAGAAATGGAACCTATAAAAGAGACACAAAATCTATGTGAAGATTTACGAAGAGAAGTTCAGGTAGACGATGCAAATTAA
- Protein Sequence
- MNIGGQQPQQYCLRWNNHRSNLLTVFDELLQNEAFTDVTLACEGGSAKCHKMVLAACSSYFQNLFTGLPHPCTHPVVVLKDVKYTEIKAILEYMYRGEVNVAQDQLAALLKVAEALKVKGLIEENGNSSVSQSSKSTIKREEQQIEQNSPPTITTSTNNVQSVAHSSSSNGSPPHSTGINGPHSFSKSPYNMYGKSPIERGSRMGLPMWAVPGMSVPHHASTVTPPSAVAAAMLTSCYEAASPDMSPLKRKKMSSMMMSRDTPILRTVLGQGQADSSQPVSLVCHPDSHENLHSNGSAYDNDKAHKSEPSDEAQSPYTDITDDDDKAKLQHLAATSPYSNDMRLSTGIATYVPTQKPEWKRYKQYTRNDIMSAIEAVRTGMSALQAARKYGVPSRTLYDKVKKLGITTSRPFKRGSNGSSIMFPYGISGTSSPYGGHIHEGEEAAISGHHPNMTLEGSFFQHSISGTPNGPGGRSPSPSPSLVQYMRQNSLTPSPPDDHHRSETNGSSERERDEENDDDQVEDLSIQRKDDPSPQQSRVIVPPMNQVSTIIKKEMEPIKETQNLCEDLRREVQVDDAN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00332534;
- 90% Identity
- iTF_00332534;
- 80% Identity
- iTF_00332534;