Ccar006302.1
Basic Information
- Insect
- Chrysoperla carnea
- Gene Symbol
- bab1
- Assembly
- GCA_905475395.1
- Location
- FR997756.1:74539113-74545268[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 2.5e-10 2e-07 31.0 0.0 2 35 11 45 10 50 0.92 2 3 2.4e-17 2e-14 53.4 0.0 1 43 138 181 138 183 0.95 3 3 3.5 2.9e+03 -1.5 2.5 6 26 273 297 271 298 0.63
Sequence Information
- Coding Sequence
- ATGTTGAAATTAAAAGCACCCACATGGACTCAAACACAGCTAAAAGAAGCCATCGAAGCTGTTGTAACACAAAAGATGCGATTCACACAAGCATCTGCACGTTATGGAATACCGAAAGGAACATTATACGATAATATCTTAGGGAAATCAAAGCGTATGGTTGTCTTAGAAGAAGCTGGTTTAACAAAAACCGAAGAAGATGCTGTTTTAGAATTTTGTTGTGATGTAAGCGTATCACCATATAATCGTCGTACGAAAAAATCATTAACATCAGTATTAGCATTCGTTGAGAAATTGCGTCCAGACAGCTACCAGTACCAATTACAATCCATGTGGCAAAAATGTTGGAACACAAATCAAAGTCTGGTACATAACTTGCGATTTCGTGAGCGTGGACCATTAAAATCATGGCGACCGGAAACAATGGCCGAAGCAATATTCTCAGTATTAAAAGAAGGTTTATCATTATCACAAGCAGCGCGCAAATATGATATACCATATCCTACTTTTGTATTATACGCAAATCGTGTACATAATATGTTGGGACCATCAGCGGATGGAGGTGCAGATTTACGACCGAAAGGTCGAGGAAGACCCCAAAGGATATTGTTAGGGGTATGGCCTGATGAACATATTCGAGGTGTGATACGAGCTGTAGTGTTTCGAGACTCTCATCAAGCTATTAAAGAAGAAGCTCAATTAGCTGCAGCATATCCACGATTACATGATGGTCTAAGTATACACAGTTATGGTACGCCTGGATCATGTAGTAGTAATGGGGGACCTGATCCGAGTGTATCACCTGGGGCAGCTGCTGCTGCAGCTGTAGCCGCTGTAGCACAAGGCTTACGTCAACAAATGTGTAGTATGGTAGCAGCAGCTCAACATCATGGAGGTGGGAGTTTAAGTGGTCTAATACCTGGAATGATGTCACGCGGTAGTCCAACAGATTCTGCTCATGATTTACGAATAAGTCCTGCAGGATCACCGTTAGATACCCCGTTGTCATCCCCGTTAGCATTAGTTGACGCACCAGCATTAAATTTAGCAACTATTGGAAGCAGTGTGGAAGTGGGAATTGGAGTATCGGGTATGGCATATAAACCACCTAGACGATATTCAACGCCCACGTCGGAACGATCTTTATTCCAAGATGAAATCGAAGATTTAGTAAAAAGTCCATTAGAATTAACATCACCGCGTATGACGCAACTACCAACAGATCCAAAAGATGTCCAAATTAAAATGGAACCCATGACAGAATGTCGGAGTGAATGA
- Protein Sequence
- MLKLKAPTWTQTQLKEAIEAVVTQKMRFTQASARYGIPKGTLYDNILGKSKRMVVLEEAGLTKTEEDAVLEFCCDVSVSPYNRRTKKSLTSVLAFVEKLRPDSYQYQLQSMWQKCWNTNQSLVHNLRFRERGPLKSWRPETMAEAIFSVLKEGLSLSQAARKYDIPYPTFVLYANRVHNMLGPSADGGADLRPKGRGRPQRILLGVWPDEHIRGVIRAVVFRDSHQAIKEEAQLAAAYPRLHDGLSIHSYGTPGSCSSNGGPDPSVSPGAAAAAAVAAVAQGLRQQMCSMVAAAQHHGGGSLSGLIPGMMSRGSPTDSAHDLRISPAGSPLDTPLSSPLALVDAPALNLATIGSSVEVGIGVSGMAYKPPRRYSTPTSERSLFQDEIEDLVKSPLELTSPRMTQLPTDPKDVQIKMEPMTECRSE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -