Cruf015937.1
Basic Information
- Insect
- Chrysomya rufifacies
- Gene Symbol
- -
- Assembly
- GCA_014858695.1
- Location
- JACGTJ010003390.1:29-6143[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0004 0.022 15.2 0.0 1 23 148 171 148 171 0.97 2 12 0.0084 0.46 11.0 3.5 2 23 220 242 216 242 0.88 3 12 0.0016 0.09 13.3 0.6 1 23 368 391 368 391 0.93 4 12 0.42 23 5.7 2.4 2 23 441 463 440 464 0.93 5 12 0.1 5.6 7.6 0.1 1 23 538 561 538 561 0.89 6 12 0.00095 0.052 14.0 2.4 2 23 612 634 612 634 0.97 7 12 0.0007 0.038 14.4 0.3 1 23 753 776 753 776 0.97 8 12 5.2e-05 0.0028 18.0 0.1 1 23 825 848 825 848 0.95 9 12 0.0011 0.062 13.8 1.1 2 23 898 920 897 920 0.95 10 12 0.063 3.4 8.3 1.8 1 22 1007 1028 1007 1030 0.90 11 12 0.48 26 5.5 0.7 1 20 1082 1101 1082 1103 0.94 12 12 0.02 1.1 9.8 0.0 2 23 1183 1205 1182 1205 0.95
Sequence Information
- Coding Sequence
- ATGGATAATTTGGAGCCTTGGAATATGTTTACCAACGATTTTATGCCAGAAGAGAGCAATAATGATCAAGAGGTAGGACGAAACGGTGAAGAGGCCAGTGGGGATGATGTGCCGTTTTCTATGCCATCACCAGTACAAGACATGCAGGTCAAAGAGGAGCCACAAGAGGTGGCCGATGAAATATTTGACGATGATACTAATAATGTACCATTTCATTTCCTGCCCGACGATGATACCACTAATCAAAATGATGACAATGATAATACTCAACCTCGTAATCCCGAAGACGATGATGCTCTATTCGATTTTGGTTTAGAATCTTCCAATTCTCAAAATCGTTCTGTTTATAGTAAACCAACGGCAGCTGAAAAAGACTTTCCTAATTTAAGTCCAGAAGATCAATATTATAATGCTATGGTCAAATTCGAAGATGCAGTTATATACATATGTCCGGCTTGTGGTCAAGAATTCAATTCACAAGATGCCTGGAAAAATCACTTAAACGTTATACATCTTTATAATACAAGACGTGGTCTAAATTTTATACAATTAGATAAACTGTATCACGAATGTTTAGAGTGTCACAAACGCATTGCTATGCATAGTATGGAAAATTTACTCAAGCATAAGTTTACACATTTACCCTACCGCTGCAGCAAGTGTCTGGTGTGTAAGAGACAATACAAATATCGTCAGGATTTAATGGTACATTTACGCATGACTCATCGTGATGATTTGATAGCACTACTTAAAAAGGAGCACAAAAAACCTAAACATCCTCATGCCCAACCACAAACTATACGTTCTTTGCTTAGCAGAAATGAAAATGGTCCGAATATTTCAATAGGAGCTGTGAAAGAAAATGCTACAGATCTATTTGATAATATTGAAGTTAAAAATGAAGTGCTCAATGAGGACGAAGATGATACAATGGGCGAAGATAGTCAGCCACCACCGGCCAAAAGACCAGCCAGAGATTTACCAGTATTTGTAGATGATAATTCTACCAATGGTTCGGCTGGCGATCAAATAATATCGAATCGTTCTAATAAATCCTCGCAAATGGATGAAATAGATGCATCTTTGGAAGAATATGTATTATTTACATGTCCCCAGTGTGGTACAGAATGTGAAACGCAAGCTCAATGGCGTCAACATATTGAATTTGTTCATGAATTTGGCACAAGAAGAGGTTTGAATTTTCGCGAATTACTTAATCAACAAGCTCAATGCATGGGTTGTAATATGATTCTGCCAAATTCTTCAATACGCAATCTACAAGTTCACAAATTCAGTCATTTACCCTACAAACAGTGGATGAGTTGTAAACTTTGTTTTACTTCATATAATAATAATCGCGATATTGTTAAGCATTTGAACGACAGACATCATTTAGTGCCAGACACTCCTACAGCTGATGGGAATAATGACGAAGATAGTCAGGAACCATTTGGCGATGATACATTTGGTGGCATGGATGATTATGATGATAGTATGGCTGGATCTGGTGGTGGTAGTTATCCTACTTCAGAAAATAGAAAATCTTCAACAGGACCACATTCTTATGCACCCAAACATGATGAACGTGACATATTTGAACAACATATAACATACATTTGTCCGGCATGTGGTAAAGAGTATAACGATAAGAAAATCTGGCGTAAACATATTGTTGAGATACATAAATTAGGTGAGTTAGAAAATTTAAATTTTGAAAGTCTCAATGATCGTCAGCTTAAGTGTAGAGAATGTGATAAGATCATAACAAATGCGTATGGTATACAAAATGCTCAACAACATCGTATGACTCATATGCAGTATAAATCATTTGCCAAATGTCGTTTATGTCGTAAAACCTATACTGATCGAAAGGGTTTAATAAAACATTTAAGAAACTCTCATAAATTGGGTTCACGTAGTAATTATGGTTCAATTAATCCAGCTCCACAAATGAGTAGTTACGGTAGTAGTGGTGGAAGTGCATCTTTTGGAAACAATACTTTTAAACCGTTTGTTAAAAAACCCTATAAGATAGCCCATTATCCACCCAAAGAAATAGTACGTCTTTCAAATTATACCTTTGAAATTGTACATTTAATTGAAGATGATGATGATGACGACGATGATGTTACTACGATAACACCAAGTGGTTATGATTTTGCCAAAGGTGATGCACATTTATATCGTAATAATAATTCGCCCTATAATACTCCCCCCACAAAAAGACCTATTGCTAATATTGAACAAATTTCACGACACAAATGTGTAGATTGCGGTTCCCTATTTCCTACACCACAAGCCCTGCAAAATCACATACGTCAAGAACATGAGTTTGTTGATTATCAAAATTCTCCTACCAACCAGGCTACGCCAAATGAGGAACAATCTAATGATACAGACGAGTTATTAGTACCCAGTCGTGATGTAGATGTCCAGCCGGAAGAACATACAACCATGGAATGTAATTTCATTTATTTGTGTCCCCAATGTGGAGTAGAATTTCGTTCGCAAGTTCAATGGCGTCGCCATATTAATATGGAACATAACTTTGATAAACGTGAATCTTTAGGTTTTCGTGCCTTGGACAAATTCCGTTATCAATGTAGACAGTGTAAAGATACAGTGACAAGTTCAAAGTTGAAAGGTCTCCAAGATCATAAATTTAGACACTGTCCTTATAAGCAGTATTTAAAATGTCTGCTATGCGGTCAATCGTATAATCATAAACCCAATATGATTGCCCATTTACGACAAAGGCATAATATTGTCGAATTTAGTGAGGGTGGCGGGACTACAACAGCTGGTGGTGGCAGTGGCTCATCCGCTACAGAACAAAGATATCCAACTTCATCACAAGCTAATCATAATAACTCCCACACGAAAGAATTCAATGATGCCCCAGCTAGACCTATACGTAATACCGACTCTTCTGTTAACAATACAAATCGTCCACCTGGCCTAAAGACCGTAGAAGATGTTATATCCTTCCACAATGCGGTTGATCATGAAACCATTACTTATCATTGTCCTTCGTGTAATGAAACTTTTGATTCCCATGTATTTTGGCGCAAACATATAGTGGATGAGCATAATTTGAACAGTAGAGAAGGTTTAAATTTCCGTCAGCTAGATGAACATCATTACATTTGTTTGCAGTGCTATAAAAGGGTAACGGTCACCCATACTAAGGGTGCTATTGGTCAGTTGCAATCGCATAAATTTAGACATTTGCCCTACAAATCATTCCGTTGTACCGCCTGCCAAGGAGAATTTGTACGTAAGCAAATGTTTTTCAAACATTTGGATCGTAATACCAATAAATGTTCTGGTATTAACCCCGAGGCAAATTTTGTGGATCCCAATGATGCCAGCACAGCGCTTAATGAAGATGATGCTACAGATTTTAATGCCACCACCATAGAGCCATCATCAAACACTTCATCATCAACTAAATTTTCTTGGTCTTCACGTTCTTCACTGCCAGCTCAATCATCTACAACAAATAATGCTGAATCCACCACTGAAAATCAAAATTGCTTTACTCTCAACTGTCCACAGTGTGGTGCAGATTTTGAAACTACACGTGCCTGGCGTGAGCACATAAATATCGAACATAATCTCAACAATCGTACTGTATTGAATTTCAAAAAAATCGGTCCCAAACTACATGTTTGTTTGGAATGTAATGAACATGTTAATGGTCGTAAATTAAGAGATCTACAGGTGCATAAATTCAAACATTTACCCTATGGCGCCTATCTTCATTGTCGTTTTTGCTCTATGAAATATTTCCATATCAGTAATATGCAAGAACATTTAAAAAATAAACATCCCAATATGGTGCAAAAAATAAAAAATATCGAAGAAGATTGTGTAGCAATGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCTGGTTTAGAGGATGTGGTCGATATGGATTTATTAGAGGCCGAAGCTGAAATAGAAGAAGTAGATCCTGATAATGTTGAATCTGATGAACAATATCTTTTAGGTTAA
- Protein Sequence
- MDNLEPWNMFTNDFMPEESNNDQEVGRNGEEASGDDVPFSMPSPVQDMQVKEEPQEVADEIFDDDTNNVPFHFLPDDDTTNQNDDNDNTQPRNPEDDDALFDFGLESSNSQNRSVYSKPTAAEKDFPNLSPEDQYYNAMVKFEDAVIYICPACGQEFNSQDAWKNHLNVIHLYNTRRGLNFIQLDKLYHECLECHKRIAMHSMENLLKHKFTHLPYRCSKCLVCKRQYKYRQDLMVHLRMTHRDDLIALLKKEHKKPKHPHAQPQTIRSLLSRNENGPNISIGAVKENATDLFDNIEVKNEVLNEDEDDTMGEDSQPPPAKRPARDLPVFVDDNSTNGSAGDQIISNRSNKSSQMDEIDASLEEYVLFTCPQCGTECETQAQWRQHIEFVHEFGTRRGLNFRELLNQQAQCMGCNMILPNSSIRNLQVHKFSHLPYKQWMSCKLCFTSYNNNRDIVKHLNDRHHLVPDTPTADGNNDEDSQEPFGDDTFGGMDDYDDSMAGSGGGSYPTSENRKSSTGPHSYAPKHDERDIFEQHITYICPACGKEYNDKKIWRKHIVEIHKLGELENLNFESLNDRQLKCRECDKIITNAYGIQNAQQHRMTHMQYKSFAKCRLCRKTYTDRKGLIKHLRNSHKLGSRSNYGSINPAPQMSSYGSSGGSASFGNNTFKPFVKKPYKIAHYPPKEIVRLSNYTFEIVHLIEDDDDDDDDVTTITPSGYDFAKGDAHLYRNNNSPYNTPPTKRPIANIEQISRHKCVDCGSLFPTPQALQNHIRQEHEFVDYQNSPTNQATPNEEQSNDTDELLVPSRDVDVQPEEHTTMECNFIYLCPQCGVEFRSQVQWRRHINMEHNFDKRESLGFRALDKFRYQCRQCKDTVTSSKLKGLQDHKFRHCPYKQYLKCLLCGQSYNHKPNMIAHLRQRHNIVEFSEGGGTTTAGGGSGSSATEQRYPTSSQANHNNSHTKEFNDAPARPIRNTDSSVNNTNRPPGLKTVEDVISFHNAVDHETITYHCPSCNETFDSHVFWRKHIVDEHNLNSREGLNFRQLDEHHYICLQCYKRVTVTHTKGAIGQLQSHKFRHLPYKSFRCTACQGEFVRKQMFFKHLDRNTNKCSGINPEANFVDPNDASTALNEDDATDFNATTIEPSSNTSSSTKFSWSSRSSLPAQSSTTNNAESTTENQNCFTLNCPQCGADFETTRAWREHINIEHNLNNRTVLNFKKIGPKLHVCLECNEHVNGRKLRDLQVHKFKHLPYGAYLHCRFCSMKYFHISNMQEHLKNKHPNMVQKIKNIEEDCVAMXXXXXXXXXXXXXXXXXXXXXXXXXXXXPGLEDVVDMDLLEAEAEIEEVDPDNVESDEQYLLG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01259649;
- 90% Identity
- -
- 80% Identity
- -