Cruf014820.1
Basic Information
- Insect
- Chrysomya rufifacies
- Gene Symbol
- -
- Assembly
- GCA_014858695.1
- Location
- JACGTJ010000718.1:4622-10419[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.036 2 9.1 0.7 1 23 393 416 393 416 0.93 2 11 5.2 2.9e+02 2.2 0.3 2 11 423 432 422 438 0.82 3 11 1.8e-06 9.7e-05 22.6 1.0 1 23 478 500 478 500 0.99 4 11 0.0015 0.084 13.4 1.1 1 23 509 532 509 532 0.91 5 11 0.0039 0.21 12.1 2.2 2 23 539 561 538 561 0.92 6 11 0.052 2.9 8.5 0.4 1 20 580 599 580 601 0.92 7 11 0.013 0.73 10.4 6.6 1 23 628 650 628 650 0.98 8 11 0.0042 0.23 12.0 1.3 1 23 657 680 657 680 0.97 9 11 2.7e-05 0.0015 18.9 3.9 1 23 686 708 686 708 0.97 10 11 0.014 0.77 10.3 1.8 2 23 714 738 713 738 0.94 11 11 0.0049 0.27 11.8 2.5 2 23 742 763 741 763 0.95
Sequence Information
- Coding Sequence
- ATGGAGCAATTGCATTTGGAATTGGAGGCATGTCGCATTTGTGTAACTTGTTATCCTTTGCAAGATATGGATTTTATCCATTTGTACCAGCCAAATGAAGAGTTTCAGCAGGAACTTGACTTCATACAAAACGAAATACGTCAGTGGCAATTAAAAATTCAACCAGATGATGGTTTGCCTCAACGTATTTGTGCCAATTGTTTTGCAAAATTCTGCAGTATAGAGGCTTTTCGCAAAGAATGTGAAGTTGCCCAAGAAAAGCTTATAGAAACGGTGTTACAACAAACCCAACAGGAACAACAACACCAACAGCAGCAAAATGCTAACGAACAATCTGAACAAGTTATTAAGAACTCCGATAATCCTTTACCCTTAATGGGTAACTATGAAGCTGGTAATATTGTTTTGGATTCCTCCAACAATGTTTTAGTTTCTTCGGTTAATCTAACACAATCAGATGTTTCTCTTAATGATTTTCCTGTATTTGATCAACAATTTTCATCTCATTTTGATAATCCCACATTAATGGATGATTCTTCCACTTTGTTAGCCGGAAATCTAATAGCAAGCGAGGAAGCTACCCAAGAATTGGGATTTTTACCGTCACAAAATTTATTTACTTTTGAGACTGCCGAACCACCCTCAACGGGTACACTGCCATTAGTTGAGACTGATAGTACGTCCATAATGAATGAAATGTTAGCCGCCGATAAATCACCACAAGATGATGGAGAAGAAAATGGTCATATTATTTTAAAACAAGATGATCTCGAAGAAATGTTAAAACACAGTATTATACCAACTACAACCAAATTAATGCAACAATCAGAACAAAAACCACAAAAAACCCAAACACAAGATCATGTTGAAAACAAACAACCCAGGGAGGAAAAAATTGTTCAAGAGGAAAATGTTACAAAGCAACAAGGACAACATTCTAATATTCATAAAGGAAGAAATGATTATCAAACAACCACGATAACTTTTCTTAACCGTGAAGACTCTAATTCGGATTACGAATGTGACGACACCGATATCAATGTCCGCCTTAAGGGTCAATCTTATGCTTGCCATTATTGCTTCTGTCCCGAAACTGGATCCATCGATCACCTTGTCTTCCCCGATGAAGATGCCCTCTCACAACATTTTTTCGATGTACATGATCCCAATCGCCCCTACACTTGTCCCAAATGTACACTGTCATACAAAACTCAATTATTACGTGATAATCACGTAAGACTCATACACAAAATTGTTGAAATACAAACCTGCAACTATTGCCAGAAACGTTTAAAAGGTTCCACAGAGGTGCATCAATATAATTGCCAGTTCATTGGAGATTGGGAGTGTCAACAGTGTAAAGAGAAATTTCCACAAACACCACTCTATCGTTTTCGTTTGCATCAGCGACAACATGAACGTATCAAACCATTTAAGTGTCGTTTGTGTGAACGTACTTTTGCGAAAAAAGCCAATTTGGAAGCACATCAAAGAATGCACAAGGCAGAAGCGTCGCCCACAACATATAATTGCAACATGTGCAATGCCAATTTTATCGATGAGTATGAATTAAAACGTCATAAATATCAACAACACAATGCTGAACATCCTCTTAAATGTATAATTTGTCATAGAGGTTTCTCTTCCAAAGTATTTCTACAACGTCATATAAATCAATTTCATCCAGATCATAGTAATAATAATTCTTCAACTTCATCCTCATCTGCTTCCGACCAGCATATTTGTCTCAATTGTAATGTAGGCTTTAAAACCCTACAAAAGCTACAAAGTCATTTACTATTGGGTCGTGATAGTAATGGCAATTGTCTGTATAGTTCTTGTAATAAATTGGAACGTCGTAAGCTACAACGTCAAGGTGTATTTCCATGTTTCCATTGTACGCGCCGTTTTCATTTACGTTCTCAACTCGATAAACATTTGAATACACATGATGCCCGTTTAAGGCCATTTCAATGTGAACAGTGTGTAACAAGATGTCGCTCGGCATTTGAATTGAAACAGCATGTTAATGTGGCCCATTTGAATATTAAGGCATTTTCTTGTGATAAATGTGGCAAATGTTTTGGTTATAAAAAGGATCTAAGGGATCATATGCTGTTCCATGCAGAAATCAATGTACGCTGCACCGAAGAAGGTTGTGATTATGCTTGTAAAAATGAAAAGGCCTTAAATGATCATATACGTCACAAACATCGTTTATTGTCCTGTGAATATTGCCATGAACAATTTACCAGACAAAAGTTAACAGCACATTTACGTAAAATTCATCGTACCGAAATCGATGTAGAATTAGCTGGCGAATCTGATAATTATTATAAATCTCAATTACTTAATAATAACAATGATATTACACAAATTTCGTTTAATTTACTTAATACTCAACAACAACAAGAACAATTGCAATTAGCTAAACANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACAATAATGAAACATCTCTTGAACAATCACAAACAACCTTAACTTGTTCGACATCTACAAATTCATTATTAACATCTAACATTTGTTCAACAGTTTCATGTGGTTTACCATCTTCCTGCACTTCTTCCTCTTCGTCAGCAGGTACTAACATATCTAATACACACGATAATGATGTAGAACGTCATCATCATGAACAACTGTGTAATATATTTGATTCAGATACTCATGTAAGGAATACATCTCCAACATCATTAACTTTAAATGGTTTAGTTGCTTCCTCCAATGATCATAATTTAAATTTAGTTACCAATGATAATAGCAATATTTTCTTAGTGCCCTCAACAACTTCATCATCGGCCAATGATAATCAATTAGATCAATATTTTATGGCTTCTTTAATTGATACTGAACAAGAAATAATTGTTACATAG
- Protein Sequence
- MEQLHLELEACRICVTCYPLQDMDFIHLYQPNEEFQQELDFIQNEIRQWQLKIQPDDGLPQRICANCFAKFCSIEAFRKECEVAQEKLIETVLQQTQQEQQHQQQQNANEQSEQVIKNSDNPLPLMGNYEAGNIVLDSSNNVLVSSVNLTQSDVSLNDFPVFDQQFSSHFDNPTLMDDSSTLLAGNLIASEEATQELGFLPSQNLFTFETAEPPSTGTLPLVETDSTSIMNEMLAADKSPQDDGEENGHIILKQDDLEEMLKHSIIPTTTKLMQQSEQKPQKTQTQDHVENKQPREEKIVQEENVTKQQGQHSNIHKGRNDYQTTTITFLNREDSNSDYECDDTDINVRLKGQSYACHYCFCPETGSIDHLVFPDEDALSQHFFDVHDPNRPYTCPKCTLSYKTQLLRDNHVRLIHKIVEIQTCNYCQKRLKGSTEVHQYNCQFIGDWECQQCKEKFPQTPLYRFRLHQRQHERIKPFKCRLCERTFAKKANLEAHQRMHKAEASPTTYNCNMCNANFIDEYELKRHKYQQHNAEHPLKCIICHRGFSSKVFLQRHINQFHPDHSNNNSSTSSSSASDQHICLNCNVGFKTLQKLQSHLLLGRDSNGNCLYSSCNKLERRKLQRQGVFPCFHCTRRFHLRSQLDKHLNTHDARLRPFQCEQCVTRCRSAFELKQHVNVAHLNIKAFSCDKCGKCFGYKKDLRDHMLFHAEINVRCTEEGCDYACKNEKALNDHIRHKHRLLSCEYCHEQFTRQKLTAHLRKIHRTEIDVELAGESDNYYKSQLLNNNNDITQISFNLLNTQQQQEQLQLAKXXXXXXXXXXXXXXXXXXXXXNNNETSLEQSQTTLTCSTSTNSLLTSNICSTVSCGLPSSCTSSSSSAGTNISNTHDNDVERHHHEQLCNIFDSDTHVRNTSPTSLTLNGLVASSNDHNLNLVTNDNSNIFLVPSTTSSSANDNQLDQYFMASLIDTEQEIIVT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -