Basic Information

Insect: Chrysomya rufifacies
Gene Symbol: -
Assembly: GCA_014858695.1
Location: JACGTJ010016285.1:6517-9976[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.08 4.4 7.9 6.0 1 23 207 230 207 230 0.98

2 10 0.96 53 4.6 2.4 1 23 259 282 259 282 0.89

3 10 0.0044 0.24 11.9 1.5 1 23 296 319 296 319 0.96

4 10 0.013 0.71 10.4 0.2 1 21 337 357 337 358 0.94

5 10 0.059 3.3 8.4 1.3 3 23 367 388 365 388 0.96

6 10 2.1e-07 1.1e-05 25.5 2.6 1 23 394 416 394 416 0.98

7 10 0.00011 0.0059 17.0 0.4 1 23 421 444 421 444 0.97

8 10 2e-05 0.0011 19.3 0.4 2 23 452 474 451 474 0.93

9 10 3.4 1.9e+02 2.8 2.9 1 23 479 501 477 501 0.95

10 10 0.00011 0.0059 17.0 2.3 1 23 506 528 506 529 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.08	4.4	7.9	6.0	1	23	207	230	207	230	0.98
2	10	0.96	53	4.6	2.4	1	23	259	282	259	282	0.89
3	10	0.0044	0.24	11.9	1.5	1	23	296	319	296	319	0.96
4	10	0.013	0.71	10.4	0.2	1	21	337	357	337	358	0.94
5	10	0.059	3.3	8.4	1.3	3	23	367	388	365	388	0.96
6	10	2.1e-07	1.1e-05	25.5	2.6	1	23	394	416	394	416	0.98
7	10	0.00011	0.0059	17.0	0.4	1	23	421	444	421	444	0.97
8	10	2e-05	0.0011	19.3	0.4	2	23	452	474	451	474	0.93
9	10	3.4	1.9e+02	2.8	2.9	1	23	479	501	477	501	0.95
10	10	0.00011	0.0059	17.0	2.3	1	23	506	528	506	529	0.95

Sequence Information

Coding Sequence: ATGTTTTCCAATTCTTGCATTTGTTGTTTATCCAAAACTAATATTTTATTGTCTTTAAGTAATAAATCTACCCATTTGGATAACAAAACCTTATGGGATTATTTGTATGCGGTTTTAGGTTTTGATGTACAACAATTTAATGCTTCATATTACATTTGCTTGAGATGTAGTAAAGCTTTACAGGTAGCCTATCATTTTATACAAATGTTTAAGCAAACAAAAAGTTCATTGGAGAAAATGGAAACTAATCAAGAGTCAAATTCGTTATTATCCATTATCTGGGATAATGATGTTAAACAAAATACTCCAGAAACTGAGATTATATCAAACGCTTTAAATCCTTCAGCATTTGAAGTTAATAATATTGTTAATATTGAAACTCAATTAGAAATACAAAGTGATCAAAGTATTGTAGTAATGCCTCAACATATTGTTCCCTTAAATATACCCAATAATTTAAAAGTCATAATACAGGAAAGTAATAAAGAAACTGTAACATTAGATGCTGGTCCATCACTATTAAAAGAGAATTTTCAGTGTATTATGTGTAATGTATTGTTTGAGGATAAACAAACTTTTGATCAACATAATAGTCAACAACATAAACAAATTGTGCCCTTTAAGTGTAAATTATGCACTTACTATACCTGTTATCGCGAAAGTCTTTTAAAACATTATAAAATGTTACACAAAGAAAACAATGTGCAAGTAGATCTGTATGAAACTAAAAGAGTTTCCCTATTGAAACCAAAAAATCCAAATTTTGCAACTACATTTTTATGTCTAAACTGTGACTTTAAATGTTCACAACAGGATCACATGGATGGTCATTTACTTGAAATACATTCAATTGAGCAAGACAAGGATTTATTTTTTAAGAAAATATACGAGTGTCCTTTATGCTATCGTTCCTTTAATGATATGAAATATGTGCGTATACATTATACCAGATATCATTTAAATTCTAATAATAATAATAATATCAACAGCACAAATTTAGTTAAAAAATTTGCCTGTGAAAAATGTGGTAAATTGTTTGATTTAAAAACTGGTCTCTTTTTGCATAAACGCGTTTGTGAAAAACGTAATGCTGTTAATTGTAATTTTTGTAAATTACTTTTCAATTCAGTTTCAAAATATGAACAACATTTACAAACTAAACACGAAGTGGCCATTAAACATGAATGTGAAATATGCGGTAAGACTTTTACACGTTCTGAATATTTAACGGTGCATCGTAAAAGACATAATGAACGTTATTATCAATGCGATTTGTGTTCGAAAAACTATATAAGTAATGCCGAGTTGAGAGTGCACAAACAGCGTATACATAGCAAAAAATGTTTAGCGGTAAAATGTAATATATGTGGCAAATTATTTGCTAGCAACTCTTCGCTAAAAAGTCACGAAAATGAACAACATACAAAGTGTTATTTCAAATGTATATATTGCAATTATATATCCTATTCCAGTCTAGCGCTTAAAGTTCATCAATATCAACATACAGGCAAACCCTATAAATGTCCTTTTTGTCCCAAAGAATTTGTTTTTCGTAAAGACCTTAGACAGCATGCTGTTAAACATCATTCTTTTAGCATAACACAAGAAGAAATGGCCATAATGTTTAGACTTTCTCATGGTTATACCAGTCGTTTTGATGCATTTTCCCAACAAAATAATGATTTGGAAATAACTGAAATTACAGACTTAGAATTAGGTAGTGAATTAAATGAATTTGGTTTAACTTTACAAGATATAATGCAGGATTTGTTTGATAATGAATTGAATAATAAATTACCTTGA
Protein Sequence: MFSNSCICCLSKTNILLSLSNKSTHLDNKTLWDYLYAVLGFDVQQFNASYYICLRCSKALQVAYHFIQMFKQTKSSLEKMETNQESNSLLSIIWDNDVKQNTPETEIISNALNPSAFEVNNIVNIETQLEIQSDQSIVVMPQHIVPLNIPNNLKVIIQESNKETVTLDAGPSLLKENFQCIMCNVLFEDKQTFDQHNSQQHKQIVPFKCKLCTYYTCYRESLLKHYKMLHKENNVQVDLYETKRVSLLKPKNPNFATTFLCLNCDFKCSQQDHMDGHLLEIHSIEQDKDLFFKKIYECPLCYRSFNDMKYVRIHYTRYHLNSNNNNNINSTNLVKKFACEKCGKLFDLKTGLFLHKRVCEKRNAVNCNFCKLLFNSVSKYEQHLQTKHEVAIKHECEICGKTFTRSEYLTVHRKRHNERYYQCDLCSKNYISNAELRVHKQRIHSKKCLAVKCNICGKLFASNSSLKSHENEQHTKCYFKCIYCNYISYSSLALKVHQYQHTGKPYKCPFCPKEFVFRKDLRQHAVKHHSFSITQEEMAIMFRLSHGYTSRFDAFSQQNNDLEITEITDLELGSELNEFGLTLQDIMQDLFDNELNNKLP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -