Basic Information

Insect: Chrysomya rufifacies
Gene Symbol: -
Assembly: GCA_014858695.1
Location: JACGTJ010030707.1:2302-4696[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.0039 0.22 12.1 0.7 3 23 285 306 283 306 0.96

2 10 0.3 17 6.1 0.1 6 23 315 332 315 332 0.99

3 10 1.2e-05 0.00066 20.0 1.8 1 23 338 360 338 360 0.99

4 10 0.00078 0.043 14.3 1.2 1 23 370 392 370 392 0.98

5 10 0.0038 0.21 12.1 1.7 1 23 400 423 400 423 0.92

6 10 0.0026 0.14 12.6 0.2 3 23 431 451 430 451 0.94

7 10 0.00013 0.0073 16.7 0.3 2 23 460 482 459 482 0.97

8 10 1.3 70 4.2 1.9 3 23 492 513 490 513 0.75

9 10 9.3e-05 0.0051 17.2 3.6 1 23 519 541 519 541 0.96

10 10 2.7e-05 0.0015 18.8 4.0 1 23 547 570 547 570 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.0039	0.22	12.1	0.7	3	23	285	306	283	306	0.96
2	10	0.3	17	6.1	0.1	6	23	315	332	315	332	0.99
3	10	1.2e-05	0.00066	20.0	1.8	1	23	338	360	338	360	0.99
4	10	0.00078	0.043	14.3	1.2	1	23	370	392	370	392	0.98
5	10	0.0038	0.21	12.1	1.7	1	23	400	423	400	423	0.92
6	10	0.0026	0.14	12.6	0.2	3	23	431	451	430	451	0.94
7	10	0.00013	0.0073	16.7	0.3	2	23	460	482	459	482	0.97
8	10	1.3	70	4.2	1.9	3	23	492	513	490	513	0.75
9	10	9.3e-05	0.0051	17.2	3.6	1	23	519	541	519	541	0.96
10	10	2.7e-05	0.0015	18.8	4.0	1	23	547	570	547	570	0.96

Sequence Information

Coding Sequence: ATGGATAATTGTATAGTATGCTGTAAACCCAATGATGACATCTTTTCACGCATCACCACCGTATCCAGTGAATGGAAGGAGTGGAATATTAAACGCATTGTAGAGAAGCATTTATGGTGGTGGTATTTAAGGCCACCATTCAAAATGGGAGCAGAACAATGGATATGCCGACAATGTTGGCAAGAATTATCGACATTTCATAATTTCTATTTAAAAGTTGAAAAAGAAAATAAACAATACGATAAGTTACTGCAGACTATGATAAAAACCGACCGAGAAGAGGTGTTGCCGGCGACTGCGGAGTCTGTAAATATCAAAGTGGAAGAACAAAATTTAGAGTGTGAATCAATACTCAATGAAAATCTCATGCAATTGGAGAAACCTAAGAGAGGGCGTAAAAAGAAAATTCCTGAACCCCCCAAAAGTATACAAATAGAAGAATTGCCCTTGGTGGTAGTGAAAAGTGAAAATGAAACACAAGATTTGCTGCCGGATTTACCCAAAGCAGAAGTTGGCATGGTATTAGAAGGTGAAGAAGTGGCGTCCATAGATTGGGAAAATTGTTTTCTAAATGATAATAATGACGATAGTGACAGTAATTCTGCTCTGGAAAATGATCCTGAATTAGAGGAAAACGATTTGGAAGATGATGAAAAGGATCACGTATTTGAACAGAAAAAATCCAAACGTGGACGTAAACCAAAATCATCTACAGTAGTAAATAAGTATAGAAAAAAATATACGAAAAAGGAAAAGAAACCTAAAGTTATAAAGGAGCCACCAAGTTCTATAGCTTTGAATATTATGCGAAAAAATGATGATTTTATAGCGGAAAATGAATTTCAATTGGCCTGTAGTGTTTGCAATACCTCGGTGGATAATTTTAATAATCTCAAAAATCACTTTCGCAAAGAACACAACATGTTGGGTTATGCCATGTGTTGTAATAAGAAATTCTATAAACGTGGTGTTCTGGTGGATCATCTTAATGTACATAAGGATCCCAACTACTTTAAATGTTCACAATGTGATAAGGCTTTGTCGACAAGGCGTAGTTATGAAAAGCACATGGAAACACATCAACTAATTGAAACTCGTGAAACGGTTTTCACTTGTGATAAATGTGACAAGTCCTTCTTAAAGAAACCAGTCTTCGAGCGTCATATACTCACTCATGTACCTGAGGAGGAGCGTAATTTCCAGTGCAACTTATGTGATAAGAAATTTGCCTCGGATTATTTGCGCAAACAGCATTTGACTTTGACTCACAACAAGAAATATGCCAAAATTTGTGATATTTGTGGCAAATTATTAAGAGACTCATTTTCATTTATACGACACATGGGTGAACATAATGGTGAACCTCCTGCCAAGGTGAAATGTGAAATATGTGGTGCTGAATTGACCAATAAATATCGTTTAAATCGTCATATAAAAATGATGCATACCGAGGAAAATCAACAGGAACAAATATGTCCTTACTGTTCGAAAGTATCACCCAATTTAAATGCCCACAAACATCATGTCAAATATACACATACCTTAGAACGTAAGCATGCCTGTCATATGTGTGAGAAAAAATTCCGACGACCTTTGGAATTAAAAGAACACTTAAGTACTCATACAGGAGAACCTTTATATACTTGTCCCCATTGTCCACGTACATTTATATCCAGTGCTAATATGCACAAACATCGTAAATTGACGCATCGCAAAGAATGGGAAGAGGGTAGACTGAAAAAAGAAGCCAAAGCTTTGGCTGGTAAACAATTTATTAAATCCTTGACTGCAGCACAAAATGTAACAGCATATGAGGACATTTCGATTATCGAAACGGGGGCGGAAAATGAAGCGGTAGCAAATTTAACAGTGTTAGATTTTTAA
Protein Sequence: MDNCIVCCKPNDDIFSRITTVSSEWKEWNIKRIVEKHLWWWYLRPPFKMGAEQWICRQCWQELSTFHNFYLKVEKENKQYDKLLQTMIKTDREEVLPATAESVNIKVEEQNLECESILNENLMQLEKPKRGRKKKIPEPPKSIQIEELPLVVVKSENETQDLLPDLPKAEVGMVLEGEEVASIDWENCFLNDNNDDSDSNSALENDPELEENDLEDDEKDHVFEQKKSKRGRKPKSSTVVNKYRKKYTKKEKKPKVIKEPPSSIALNIMRKNDDFIAENEFQLACSVCNTSVDNFNNLKNHFRKEHNMLGYAMCCNKKFYKRGVLVDHLNVHKDPNYFKCSQCDKALSTRRSYEKHMETHQLIETRETVFTCDKCDKSFLKKPVFERHILTHVPEEERNFQCNLCDKKFASDYLRKQHLTLTHNKKYAKICDICGKLLRDSFSFIRHMGEHNGEPPAKVKCEICGAELTNKYRLNRHIKMMHTEENQQEQICPYCSKVSPNLNAHKHHVKYTHTLERKHACHMCEKKFRRPLELKEHLSTHTGEPLYTCPHCPRTFISSANMHKHRKLTHRKEWEEGRLKKEAKALAGKQFIKSLTAAQNVTAYEDISIIETGAENEAVANLTVLDF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01261310;
90% Identity: -
80% Identity: -